Cow genome map


           Conread name:
           Pig2-119G18
        

               Conread position:
               2-242
               

               Cow position:
               chr1:42869846-42870091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               14, 26
               

               Conread position:
               2-275
               

               Cow position:
               chr1:40512975-40513260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               7-534
               

               Cow position:
               chr1:18405806-18406335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 24
               

               Conread position:
               14-504
               

               Cow position:
               chr1:13880509-13880020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               330
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               12, 22
               

               Conread position:
               15-376
               

               Cow position:
               chr1:55322665-55323041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 251
               

               Conread position:
               15-463
               

               Cow position:
               chr1:89479703-89479249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               319
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               29, 218
               

               Conread position:
               15-518
               

               Cow position:
               chr1:25886772-25887284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 31
               

               Conread position:
               15-533
               

               Cow position:
               chr1:30027158-30027687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 76
               

               Conread position:
               15-544
               

               Cow position:
               chr1:54365439-54365976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               547
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 210
               

               Conread position:
               16-259
               

               Cow position:
               chr1:94253310-94253052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               186
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               17-540
               

               Cow position:
               chr1:72137027-72136490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 10
               

               Conread position:
               28-255
               

               Cow position:
               chr1:21720267-21720027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               79, 32
               

               Conread position:
               29-521
               

               Cow position:
               chr1:79109645-79109163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               338
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               80, 38
               

               Conread position:
               29-547
               

               Cow position:
               chr1:98660937-98661453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               533
               

               Alignm identity:
               340
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               39, 280
               

               Conread position:
               33-350
               

               Cow position:
               chr1:38387333-38387640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               74, 107
               

               Conread position:
               34-539
               

               Cow position:
               chr1:38384928-38385434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               327
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               27, 134
               

               Conread position:
               34-543
               

               Cow position:
               chr1:34689715-34689186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               535
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 273
               

               Conread position:
               38-289
               

               Cow position:
               chr1:24651126-24650861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               33, 193
               

               Conread position:
               51-237
               

               Cow position:
               chr1:72038992-72039192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               52-534
               

               Cow position:
               chr1:40308404-40307919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 34
               

               Conread position:
               52-540
               

               Cow position:
               chr1:33712410-33711912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 34
               

               Conread position:
               54-372
               

               Cow position:
               chr1:28723218-28722892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               236
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               74, 32
               

               Conread position:
               56-545
               

               Cow position:
               chr1:33851626-33851122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 45
               

               Conread position:
               57-547
               

               Cow position:
               chr1:89899364-89899860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 17
               

               Conread position:
               57-548
               

               Cow position:
               chr1:82918323-82918817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 29
               

               Conread position:
               61-540
               

               Cow position:
               chr1:13646051-13645580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 19
               

               Conread position:
               69-530
               

               Cow position:
               chr1:18880062-18880534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 23
               

               Conread position:
               69-545
               

               Cow position:
               chr1:62925944-62925456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 23
               

               Conread position:
               70-545
               

               Cow position:
               chr1:56723485-56722999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 16
               

               Conread position:
               74-546
               

               Cow position:
               chr1:45098021-45097549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 6
               

               Conread position:
               80-545
               

               Cow position:
               chr1:87207107-87207573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 14
               

               Conread position:
               86-377
               

               Cow position:
               chr1:31397007-31396705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               94-312
               

               Cow position:
               chr1:102549543-102549329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               94-364
               

               Cow position:
               chr1:40574522-40574243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               204
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               94-364
               

               Cow position:
               chr1:82652962-82652681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               94-364
               

               Cow position:
               chr1:82912835-82913116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               207
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               94-371
               

               Cow position:
               chr1:99348729-99349017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               94-483
               

               Cow position:
               chr1:29362605-29362204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 279
               

               Conread position:
               94-485
               

               Cow position:
               chr1:60339614-60339211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 295
               

               Conread position:
               94-539
               

               Cow position:
               chr1:72657295-72656831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 257
               

               Conread position:
               94-540
               

               Cow position:
               chr1:101150141-101149684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 279
               

               Conread position:
               94-540
               

               Cow position:
               chr1:101857678-101858135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 161
               

               Conread position:
               94-544
               

               Cow position:
               chr1:30283234-30283693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 184
               

               Conread position:
               94-545
               

               Cow position:
               chr1:13450515-13450053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 167
               

               Conread position:
               94-545
               

               Cow position:
               chr1:28711225-28710759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 279
               

               Conread position:
               94-545
               

               Cow position:
               chr1:39544078-39543614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 212
               

               Conread position:
               94-545
               

               Cow position:
               chr1:40053664-40053198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 321
               

               Conread position:
               94-545
               

               Cow position:
               chr1:59209830-59210291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 279
               

               Conread position:
               94-545
               

               Cow position:
               chr1:61309311-61308846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 279
               

               Conread position:
               94-545
               

               Cow position:
               chr1:67834832-67835295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 11
               

               Conread position:
               94-545
               

               Cow position:
               chr1:69766771-69766307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 110
               

               Conread position:
               94-545
               

               Cow position:
               chr1:71562265-71562735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 283
               

               Conread position:
               94-545
               

               Cow position:
               chr1:82564812-82564347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 295
               

               Conread position:
               94-545
               

               Cow position:
               chr1:91718330-91718791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 146
               

               Conread position:
               94-546
               

               Cow position:
               chr1:17036248-17036715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 280
               

               Conread position:
               94-546
               

               Cow position:
               chr1:20829198-20828732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 279
               

               Conread position:
               94-546
               

               Cow position:
               chr1:21087722-21087256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 279
               

               Conread position:
               94-546
               

               Cow position:
               chr1:57656852-57656393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 310
               

               Conread position:
               94-546
               

               Cow position:
               chr1:86547826-86548291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 278
               

               Conread position:
               94-546
               

               Cow position:
               chr1:91899305-91898844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 184
               

               Conread position:
               94-547
               

               Cow position:
               chr1:38415106-38414645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 119
               

               Conread position:
               94-547
               

               Cow position:
               chr1:88635679-88635213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 138
               

               Conread position:
               94-547
               

               Cow position:
               chr1:97124116-97123674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               318
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               29, 133
               

               Conread position:
               95-530
               

               Cow position:
               chr1:28801092-28801565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               326
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               12, 325
               

               Conread position:
               95-540
               

               Cow position:
               chr1:1461024-1461478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 92
               

               Conread position:
               95-545
               

               Cow position:
               chr1:80358872-80359326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 153
               

               Conread position:
               96-548
               

               Cow position:
               chr1:11862952-11863395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 74
               

               Conread position:
               105-546
               

               Cow position:
               chr1:28873368-28872920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 281
               

               Conread position:
               106-542
               

               Cow position:
               chr1:42290679-42290242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 262
               

               Conread position:
               106-544
               

               Cow position:
               chr1:89770388-89770838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 314
               

               Conread position:
               106-545
               

               Cow position:
               chr1:56490137-56489682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 267
               

               Conread position:
               117-546
               

               Cow position:
               chr1:72186595-72187030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 264
               

               Conread position:
               122-374
               

               Cow position:
               chr1:85882279-85882021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 57
               

               Conread position:
               122-374
               

               Cow position:
               chr1:94659959-94659704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               194
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               23, 140
               

               Conread position:
               122-545
               

               Cow position:
               chr1:57568229-57567794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 265
               

               Conread position:
               122-546
               

               Cow position:
               chr1:42736729-42736300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 42
               

               Conread position:
               122-546
               

               Cow position:
               chr1:52359000-52359433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 171
               

               Conread position:
               122-546
               

               Cow position:
               chr1:62244370-62244805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 207
               

               Conread position:
               122-546
               

               Cow position:
               chr1:78290141-78289724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 226
               

               Conread position:
               122-546
               

               Cow position:
               chr1:79456695-79457124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 199
               

               Conread position:
               122-546
               

               Cow position:
               chr1:88131048-88130601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               122-546
               

               Cow position:
               chr1:97226434-97226857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 54
               

               Conread position:
               122-548
               

               Cow position:
               chr1:72981544-72981108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 263
               

               Conread position:
               123-352
               

               Cow position:
               chr1:66686262-66686490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               13, 59
               

               Conread position:
               123-546
               

               Cow position:
               chr1:69403256-69402835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 131
               

               Conread position:
               136-376
               

               Cow position:
               chr1:67901673-67901911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               178, 142
               

               Conread position:
               136-463
               

               Cow position:
               chr1:46835781-46835453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               105, 70
               

               Conread position:
               136-545
               

               Cow position:
               chr1:87245068-87244637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 0
               

               Conread position:
               137-353
               

               Cow position:
               chr1:95239626-95239408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               163
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               181, 0
               

               Conread position:
               137-540
               

               Cow position:
               chr1:79636678-79637079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 75
               

               Conread position:
               137-545
               

               Cow position:
               chr1:11291850-11292260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               229, 72
               

               Conread position:
               137-545
               

               Cow position:
               chr1:55276228-55276643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 228
               

               Conread position:
               137-545
               

               Cow position:
               chr1:85791943-85791534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 226
               

               Conread position:
               137-546
               

               Cow position:
               chr1:8825307-8824902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 230
               

               Conread position:
               137-546
               

               Cow position:
               chr1:18244128-18244545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 242
               

               Conread position:
               137-546
               

               Cow position:
               chr1:31365820-31366234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               190, 243
               

               Conread position:
               137-546
               

               Cow position:
               chr1:56163583-56163169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 227
               

               Conread position:
               137-546
               

               Cow position:
               chr1:67286742-67286333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               280
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               100, 44
               

               Conread position:
               137-548
               

               Cow position:
               chr1:69537153-69536745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 48
               

               Conread position:
               139-546
               

               Cow position:
               chr1:3385766-3386164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 65
               

               Conread position:
               144-445
               

               Cow position:
               chr1:58883818-58884121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 220
               

               Conread position:
               144-542
               

               Cow position:
               chr1:62853596-62853995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 117
               

               Conread position:
               144-546
               

               Cow position:
               chr1:72081028-72080615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 260
               

               Conread position:
               144-546
               

               Cow position:
               chr1:99911208-99910794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 162
               

               Conread position:
               145-363
               

               Cow position:
               chr1:61738268-61738483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               180, 33
               

               Conread position:
               145-364
               

               Cow position:
               chr1:99020712-99020936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               160
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               7, 58
               

               Conread position:
               145-384
               

               Cow position:
               chr1:99375202-99374971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               98, 33
               

               Conread position:
               146-350
               

               Cow position:
               chr1:77655943-77655741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               171, 6
               

               Conread position:
               146-548
               

               Cow position:
               chr1:59933787-59933394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               271
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               172, 58
               

               Conread position:
               148-276
               

               Cow position:
               chr1:65386573-65386445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               98
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               148-277
               

               Cow position:
               chr1:69922193-69922322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               103
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               148-334
               

               Cow position:
               chr1:5502179-5501991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               153
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               170, 0
               

               Conread position:
               148-377
               

               Cow position:
               chr1:82923934-82924163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               175
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               175, 185
               

               Conread position:
               148-486
               

               Cow position:
               chr1:32341830-32342170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               227
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               177, 201
               

               Conread position:
               148-516
               

               Cow position:
               chr1:73070811-73071182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 232
               

               Conread position:
               148-521
               

               Cow position:
               chr1:63501699-63501326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               174, 233
               

               Conread position:
               148-530
               

               Cow position:
               chr1:12061951-12062338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 232
               

               Conread position:
               148-540
               

               Cow position:
               chr1:52232870-52233262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 196
               

               Conread position:
               148-543
               

               Cow position:
               chr1:76752408-76752807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 232
               

               Conread position:
               148-545
               

               Cow position:
               chr1:8554574-8554171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 216
               

               Conread position:
               148-546
               

               Cow position:
               chr1:21999712-22000113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 139
               

               Conread position:
               148-546
               

               Cow position:
               chr1:49973945-49974348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 232
               

               Conread position:
               148-546
               

               Cow position:
               chr1:56193686-56194088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 0
               

               Conread position:
               148-546
               

               Cow position:
               chr1:57366887-57367289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 258
               

               Conread position:
               148-546
               

               Cow position:
               chr1:58336080-58335679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               251, 230
               

               Conread position:
               148-546
               

               Cow position:
               chr1:68607298-68607705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 258
               

               Conread position:
               148-546
               

               Cow position:
               chr1:76545294-76545700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 119
               

               Conread position:
               148-546
               

               Cow position:
               chr1:76622712-76623105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 254
               

               Conread position:
               148-546
               

               Cow position:
               chr1:79335559-79335962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 232
               

               Conread position:
               148-546
               

               Cow position:
               chr1:85780535-85780935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               252, 159
               

               Conread position:
               148-546
               

               Cow position:
               chr1:91892878-91893268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 69
               

               Conread position:
               148-546
               

               Cow position:
               chr1:93854766-93854363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 232
               

               Conread position:
               148-547
               

               Cow position:
               chr1:33551163-33550764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 99
               

               Conread position:
               148-547
               

               Cow position:
               chr1:100597128-100597541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 175
               

               Conread position:
               148-548
               

               Cow position:
               chr1:17941542-17941970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               293
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               166, 73
               

               Conread position:
               148-548
               

               Cow position:
               chr1:56144093-56144491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 139
               

               Conread position:
               149-306
               

               Cow position:
               chr1:40954146-40953989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               149-350
               

               Cow position:
               chr1:84149663-84149461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               151, 28
               

               Conread position:
               149-353
               

               Cow position:
               chr1:98864908-98865115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               20, 24
               

               Conread position:
               149-518
               

               Cow position:
               chr1:39481738-39482109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               174, 193
               

               Conread position:
               149-531
               

               Cow position:
               chr1:48246058-48245669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 233
               

               Conread position:
               149-540
               

               Cow position:
               chr1:89740024-89740396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 68
               

               Conread position:
               149-545
               

               Cow position:
               chr1:33895925-33895522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 216
               

               Conread position:
               149-545
               

               Cow position:
               chr1:52918384-52918774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               264
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               169, 28
               

               Conread position:
               149-546
               

               Cow position:
               chr1:86698973-86699375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 174
               

               Conread position:
               149-546
               

               Cow position:
               chr1:102434795-102435184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 45
               

               Conread position:
               150-347
               

               Cow position:
               chr1:45023346-45023544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               168, 14
               

               Conread position:
               151-531
               

               Cow position:
               chr1:15026128-15025755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               242
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               174, 19
               

               Conread position:
               151-546
               

               Cow position:
               chr1:17012496-17012893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 211
               

               Conread position:
               151-546
               

               Cow position:
               chr1:40684448-40684847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 229
               

               Conread position:
               153-547
               

               Cow position:
               chr1:63605541-63605940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 227
               

               Conread position:
               154-546
               

               Cow position:
               chr1:25179791-25180188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 226
               

               Conread position:
               157-481
               

               Cow position:
               chr1:77117350-77117681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               62, 257
               

               Conread position:
               171-385
               

               Cow position:
               chr1:80555851-80556066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               6, 83
               

               Conread position:
               178-540
               

               Cow position:
               chr1:98784265-98783905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               230
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               148, 60
               

               Conread position:
               179-545
               

               Cow position:
               chr1:19992468-19992834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               144, 211
               

               Conread position:
               194-335
               

               Cow position:
               chr1:60280313-60280456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               194-545
               

               Cow position:
               chr1:89425786-89425433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 37
               

               Conread position:
               196-548
               

               Cow position:
               chr1:44101550-44101904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               228
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               89, 82
               

               Conread position:
               211-546
               

               Cow position:
               chr1:79920544-79920884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               237
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               107, 153
               

               Conread position:
               213-546
               

               Cow position:
               chr1:55776331-55775997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 93
               

               Conread position:
               231-547
               

               Cow position:
               chr1:53045625-53045938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               28, 116
               

               Conread position:
               253-546
               

               Cow position:
               chr1:25550197-25549906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               62, 88
               

               Conread position:
               265-545
               

               Cow position:
               chr1:15347456-15347742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               207
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               53, 99
               

               Conread position:
               283-546
               

               Cow position:
               chr1:69922355-69922620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               32, 97
               

               Conread position:
               295-546
               

               Cow position:
               chr1:62805707-62805963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               20, 69
               
Show alignments to all cow chromosomes.