Cow genome map

Conread name: Pig2-119G18

Conread position: 1-540
Cow position: chr11:8283145-8282589 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 174

Conread position: 5-363
Cow position: chr11:3240701-3240338 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 242
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 19, 31

Conread position: 15-260
Cow position: chr11:7316924-7316668 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 180
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 54, 79

Conread position: 19-516
Cow position: chr11:10090393-10089871 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 281

Conread position: 34-540
Cow position: chr11:42429371-42428850 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 223

Conread position: 35-546
Cow position: chr11:63659560-63660077 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 59

Conread position: 37-344
Cow position: chr11:17280276-17280585 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 85

Conread position: 38-548
Cow position: chr11:29233634-29234145 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 333
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 38, 137

Conread position: 52-463
Cow position: chr11:17220198-17220632 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 348

Conread position: 56-548
Cow position: chr11:44231125-44230630 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 328
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 30, 6

Conread position: 70-546
Cow position: chr11:1496082-1496564 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 14

Conread position: 74-538
Cow position: chr11:25527546-25527085 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 5

Conread position: 85-374
Cow position: chr11:73477287-73476987 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 86-271
Cow position: chr11:9220141-9220336 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 148
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 21, 160

Conread position: 92-545
Cow position: chr11:85393838-85394303 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 268

Conread position: 94-541
Cow position: chr11:37491676-37492140 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 116

Conread position: 94-543
Cow position: chr11:12351095-12351555 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 351

Conread position: 94-545
Cow position: chr11:3492981-3492517 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 279

Conread position: 94-545
Cow position: chr11:9606608-9607070 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 69

Conread position: 94-545
Cow position: chr11:15983594-15983128 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 279

Conread position: 94-545
Cow position: chr11:19064279-19064745 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 279

Conread position: 94-545
Cow position: chr11:20920775-20921241 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 328

Conread position: 94-545
Cow position: chr11:32450837-32450372 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 167

Conread position: 94-545
Cow position: chr11:36744210-36744676 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 279

Conread position: 94-545
Cow position: chr11:57628076-57628542 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 279

Conread position: 94-545
Cow position: chr11:67846601-67847063 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 325

Conread position: 94-546
Cow position: chr11:67450468-67450002 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 153

Conread position: 94-548
Cow position: chr11:45111339-45110863 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 284

Conread position: 94-548
Cow position: chr11:61401081-61401538 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 274

Conread position: 94-548
Cow position: chr11:75920372-75919921 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 62

Conread position: 95-343
Cow position: chr11:8519958-8519703 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 114

Conread position: 95-540
Cow position: chr11:8887188-8887639 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 146

Conread position: 95-540
Cow position: chr11:34020860-34020414 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 271

Conread position: 95-545
Cow position: chr11:37477149-37477614 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 295

Conread position: 98-473
Cow position: chr11:5343251-5343638 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 265
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 30, 275

Conread position: 122-546
Cow position: chr11:11988046-11987625 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 54

Conread position: 122-546
Cow position: chr11:26124992-26125426 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 283

Conread position: 122-546
Cow position: chr11:71329583-71329149 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 264

Conread position: 123-519
Cow position: chr11:44495663-44496063 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 234

Conread position: 127-375
Cow position: chr11:31414000-31414247 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 191, 9

Conread position: 134-292
Cow position: chr11:4065312-4065471 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 93, 0

Conread position: 136-546
Cow position: chr11:53287536-53287950 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 244

Conread position: 137-286
Cow position: chr11:77235633-77235486 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 143, 0

Conread position: 137-321
Cow position: chr11:9734730-9734913 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 57, 0

Conread position: 137-327
Cow position: chr11:38505687-38505877 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 181, 89

Conread position: 137-450
Cow position: chr11:64045916-64045601 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 227

Conread position: 137-479
Cow position: chr11:37065203-37065550 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 201

Conread position: 137-540
Cow position: chr11:7113512-7113112 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 279
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 108, 63

Conread position: 137-540
Cow position: chr11:9659469-9659888 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 255

Conread position: 137-545
Cow position: chr11:17107768-17108181 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 212

Conread position: 137-546
Cow position: chr11:28229835-28230244 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 245

Conread position: 137-546
Cow position: chr11:52419306-52418893 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 227

Conread position: 137-547
Cow position: chr11:8261785-8262196 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 228

Conread position: 137-548
Cow position: chr11:28063594-28063193 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 80

Conread position: 142-488
Cow position: chr11:66726377-66726030 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 136

Conread position: 143-540
Cow position: chr11:44860618-44861014 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 10

Conread position: 143-546
Cow position: chr11:29668720-29669124 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 10

Conread position: 144-546
Cow position: chr11:4270960-4271365 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 236

Conread position: 144-547
Cow position: chr11:30305142-30304749 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 132

Conread position: 144-548
Cow position: chr11:54209523-54209121 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 54

Conread position: 146-373
Cow position: chr11:52886593-52886818 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 173
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 5, 36

Conread position: 146-547
Cow position: chr11:33044213-33044617 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 269
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 48, 24

Conread position: 148-374
Cow position: chr11:40776635-40776863 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 0

Conread position: 148-540
Cow position: chr11:10210055-10210456 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 196

Conread position: 148-540
Cow position: chr11:87127747-87127354 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 256
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 167, 76

Conread position: 148-544
Cow position: chr11:9157526-9157919 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 50

Conread position: 148-544
Cow position: chr11:28054693-28055089 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 128

Conread position: 148-545
Cow position: chr11:8244611-8244213 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 64

Conread position: 148-546
Cow position: chr11:4027656-4028045 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 274
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 174, 117

Conread position: 148-546
Cow position: chr11:10847349-10846949 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 56

Conread position: 148-546
Cow position: chr11:12358518-12358917 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 241

Conread position: 148-546
Cow position: chr11:19102579-19102981 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 258

Conread position: 148-546
Cow position: chr11:23877209-23876809 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 85

Conread position: 148-546
Cow position: chr11:24393224-24392830 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 175

Conread position: 148-546
Cow position: chr11:43514723-43515126 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 56

Conread position: 148-546
Cow position: chr11:72110058-72110456 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 194

Conread position: 148-548
Cow position: chr11:41170785-41171190 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 232

Conread position: 149-284
Cow position: chr11:12093463-12093328 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 149-351
Cow position: chr11:48085016-48084815 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 171, 30

Conread position: 149-521
Cow position: chr11:43732310-43731943 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 258
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 51, 29

Conread position: 149-540
Cow position: chr11:21466983-21466587 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 231

Conread position: 149-546
Cow position: chr11:4041170-4041559 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 82

Conread position: 149-546
Cow position: chr11:37093155-37093557 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 0

Conread position: 149-546
Cow position: chr11:77728614-77729021 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 222

Conread position: 150-546
Cow position: chr11:30125355-30125742 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 266
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 168, 46

Conread position: 151-532
Cow position: chr11:81852728-81853104 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 257
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 167, 185

Conread position: 173-537
Cow position: chr11:10050002-10049638 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 242
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 145, 273

Conread position: 173-546
Cow position: chr11:38835539-38835912 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 95

Conread position: 175-546
Cow position: chr11:44157357-44157731 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 203

Conread position: 175-546
Cow position: chr11:58134250-58133874 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 205

Conread position: 187-459
Cow position: chr11:32685152-32684882 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 187
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 47, 173

Conread position: 194-355
Cow position: chr11:7688470-7688308 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 131
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 128, 10

Conread position: 201-542
Cow position: chr11:15998747-15998407 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 92

Conread position: 204-518
Cow position: chr11:13067171-13067477 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 212
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 108, 133

Conread position: 204-518
Cow position: chr11:13162833-13162527 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 210
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 108, 133

Conread position: 235-539
Cow position: chr11:44895200-44895505 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 201
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 7, 43

Show alignments to all cow chromosomes.