Cow genome map
| Conread name: | Pig2-119G18 |
| Conread position: | 1-351 |
| Cow position: | chr16:49235484-49235848 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 219 |
| Conread position: | 2-545 |
| Cow position: | chr16:42739760-42740319 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 259 |
| Conread position: | 5-274 |
| Cow position: | chr16:29033377-29033094 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 11, 38 |
| Conread position: | 5-481 |
| Cow position: | chr16:32935831-32935324 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 378 |
| Conread position: | 5-531 |
| Cow position: | chr16:25156558-25157102 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 231 |
| Conread position: | 6-220 |
| Cow position: | chr16:16273176-16273403 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 9 |
| Conread position: | 17-539 |
| Cow position: | chr16:31375633-31376147 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 359 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 51, 171 |
| Conread position: | 18-545 |
| Cow position: | chr16:49256936-49257471 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 11 |
| Conread position: | 21-532 |
| Cow position: | chr16:335932-335414 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 66 |
| Conread position: | 33-546 |
| Cow position: | chr16:9930172-9929647 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 264 |
| Conread position: | 35-316 |
| Cow position: | chr16:18499722-18500012 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 200 |
| Conread position: | 39-288 |
| Cow position: | chr16:52814864-52815124 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 27, 157 |
| Conread position: | 64-545 |
| Cow position: | chr16:34529913-34529428 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 85-399 |
| Cow position: | chr16:53045929-53045603 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 93-540 |
| Cow position: | chr16:56551688-56551236 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 133 |
| Conread position: | 94-342 |
| Cow position: | chr16:7906185-7905928 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 33, 201 |
| Conread position: | 94-377 |
| Cow position: | chr16:19713323-19713612 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 112 |
| Conread position: | 94-535 |
| Cow position: | chr16:36282963-36282513 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 147 |
| Conread position: | 94-540 |
| Cow position: | chr16:11052726-11052275 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 101 |
| Conread position: | 94-540 |
| Cow position: | chr16:20254745-20255203 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 326 |
| Conread position: | 94-545 |
| Cow position: | chr16:32304-31850 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 138 |
| Conread position: | 94-545 |
| Cow position: | chr16:25188208-25187743 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 129 |
| Conread position: | 94-545 |
| Cow position: | chr16:28170797-28171257 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 154 |
| Conread position: | 94-546 |
| Cow position: | chr16:5661416-5660962 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 258 |
| Conread position: | 94-547 |
| Cow position: | chr16:10808716-10808263 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 153 |
| Conread position: | 95-531 |
| Cow position: | chr16:14666263-14666714 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 295 |
| Conread position: | 99-545 |
| Cow position: | chr16:2239179-2239632 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 33 |
| Conread position: | 106-547 |
| Cow position: | chr16:36361808-36362251 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 139 |
| Conread position: | 114-544 |
| Cow position: | chr16:23982856-23982415 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 257 |
| Conread position: | 122-374 |
| Cow position: | chr16:9777620-9777361 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 23, 215 |
| Conread position: | 122-544 |
| Cow position: | chr16:2483607-2484036 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 265 |
| Conread position: | 122-545 |
| Cow position: | chr16:1567919-1568351 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 207 |
| Conread position: | 122-546 |
| Cow position: | chr16:836564-836131 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 274 |
| Conread position: | 122-546 |
| Cow position: | chr16:5483858-5483423 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 264 |
| Conread position: | 122-546 |
| Cow position: | chr16:27734267-27734703 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 265 |
| Conread position: | 137-539 |
| Cow position: | chr16:42050873-42051264 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 119 |
| Conread position: | 137-545 |
| Cow position: | chr16:6943146-6942724 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 235 |
| Conread position: | 137-546 |
| Cow position: | chr16:28471587-28471994 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 98, 176 |
| Conread position: | 137-547 |
| Cow position: | chr16:39821144-39820735 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 67 |
| Conread position: | 145-545 |
| Cow position: | chr16:5918990-5918586 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 197 |
| Conread position: | 148-514 |
| Cow position: | chr16:51685940-51685568 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 256 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 170, 183 |
| Conread position: | 148-540 |
| Cow position: | chr16:6549021-6549414 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 263 |
| Conread position: | 148-540 |
| Cow position: | chr16:41560156-41559780 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 167, 24 |
| Conread position: | 148-544 |
| Cow position: | chr16:23253004-23253400 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 140 |
| Conread position: | 148-545 |
| Cow position: | chr16:407528-407930 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 235 |
| Conread position: | 148-546 |
| Cow position: | chr16:2411466-2411868 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 306 |
| Conread position: | 148-546 |
| Cow position: | chr16:2727785-2728211 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 11 |
| Conread position: | 148-546 |
| Cow position: | chr16:8816601-8817003 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 232 |
| Conread position: | 148-546 |
| Cow position: | chr16:10203927-10204312 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 206 |
| Conread position: | 148-546 |
| Cow position: | chr16:10437746-10437356 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 232 |
| Conread position: | 148-546 |
| Cow position: | chr16:12538422-12538823 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 30 |
| Conread position: | 148-546 |
| Cow position: | chr16:15184306-15183905 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 121 |
| Conread position: | 148-546 |
| Cow position: | chr16:15492212-15491809 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 258 |
| Conread position: | 148-546 |
| Cow position: | chr16:15566247-15565852 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 22 |
| Conread position: | 148-546 |
| Cow position: | chr16:25341468-25341070 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 220 |
| Conread position: | 148-546 |
| Cow position: | chr16:26663252-26662849 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 258 |
| Conread position: | 148-546 |
| Cow position: | chr16:29046525-29046122 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 232 |
| Conread position: | 149-333 |
| Cow position: | chr16:41757946-41758131 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 173, 94 |
| Conread position: | 149-540 |
| Cow position: | chr16:36232113-36232498 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 64 |
| Conread position: | 149-544 |
| Cow position: | chr16:47563192-47562789 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 266 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 84, 166 |
| Conread position: | 149-546 |
| Cow position: | chr16:40296676-40297074 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 231 |
| Conread position: | 149-548 |
| Cow position: | chr16:25085123-25084722 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 91 |
| Conread position: | 149-548 |
| Cow position: | chr16:28438285-28438685 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 89, 231 |
| Conread position: | 150-546 |
| Cow position: | chr16:31592403-31592805 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 230 |
| Conread position: | 150-546 |
| Cow position: | chr16:43897767-43898167 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 94 |
| Conread position: | 152-548 |
| Cow position: | chr16:55111344-55111746 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 65, 177 |
| Conread position: | 156-540 |
| Cow position: | chr16:11111447-11111830 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 80, 121 |
| Conread position: | 175-546 |
| Cow position: | chr16:25441094-25440720 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 175-546 |
| Cow position: | chr16:25457995-25458369 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 205-545 |
| Cow position: | chr16:4303031-4303369 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 113, 175 |
| Conread position: | 218-540 |
| Cow position: | chr16:16276074-16276397 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 85, 25 |
| Conread position: | 248-546 |
| Cow position: | chr16:1430627-1430329 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 8, 22 |
| Conread position: | 250-545 |
| Cow position: | chr16:32606230-32605929 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 68, 114 |
| Conread position: | 260-518 |
| Cow position: | chr16:18687734-18687989 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 65, 129 |
| Conread position: | 275-540 |
| Cow position: | chr16:29675934-29676198 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 43, 60 |
Show alignments to all cow chromosomes.