Cow genome map
| Conread name: | Pig2-119G18 |
| Conread position: | 1-268 |
| Cow position: | chr18:56462457-56462733 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 202 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 15, 258 |
| Conread position: | 1-548 |
| Cow position: | chr18:29237260-29236702 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 255 |
| Conread position: | 5-267 |
| Cow position: | chr18:29763811-29763540 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 5, 183 |
| Conread position: | 12-336 |
| Cow position: | chr18:54003949-54003616 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 43, 19 |
| Conread position: | 14-547 |
| Cow position: | chr18:2886583-2887136 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 220 |
| Conread position: | 15-364 |
| Cow position: | chr18:16842904-16843265 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 294 |
| Conread position: | 15-540 |
| Cow position: | chr18:37599107-37599635 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 16-546 |
| Cow position: | chr18:54171428-54171957 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 310 |
| Conread position: | 61-539 |
| Cow position: | chr18:16534361-16533872 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 80-544 |
| Cow position: | chr18:43146561-43147036 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 85-545 |
| Cow position: | chr18:22602848-22602373 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 288 |
| Conread position: | 86-546 |
| Cow position: | chr18:55088565-55089039 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 287 |
| Conread position: | 94-289 |
| Cow position: | chr18:17992069-17992273 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 94-370 |
| Cow position: | chr18:51462727-51463011 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 41, 102 |
| Conread position: | 94-371 |
| Cow position: | chr18:19539233-19539516 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 94-374 |
| Cow position: | chr18:24040380-24040672 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 94-538 |
| Cow position: | chr18:1521497-1521025 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 322 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 29, 296 |
| Conread position: | 94-539 |
| Cow position: | chr18:35335831-35335382 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 279 |
| Conread position: | 94-540 |
| Cow position: | chr18:6868907-6869366 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 326 |
| Conread position: | 94-540 |
| Cow position: | chr18:32294110-32293667 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 72 |
| Conread position: | 94-540 |
| Cow position: | chr18:48222230-48221769 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 92 |
| Conread position: | 94-540 |
| Cow position: | chr18:54044371-54044809 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 74 |
| Conread position: | 94-544 |
| Cow position: | chr18:2019335-2019798 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 278 |
| Conread position: | 94-545 |
| Cow position: | chr18:16079069-16078586 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 94-545 |
| Cow position: | chr18:47742370-47741904 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 295 |
| Conread position: | 94-546 |
| Cow position: | chr18:11274754-11275214 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 295 |
| Conread position: | 94-546 |
| Cow position: | chr18:19352734-19352272 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 276 |
| Conread position: | 94-546 |
| Cow position: | chr18:33953223-33953682 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 94-548 |
| Cow position: | chr18:47719232-47719685 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 262 |
| Conread position: | 95-540 |
| Cow position: | chr18:23944023-23944479 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 295 |
| Conread position: | 106-546 |
| Cow position: | chr18:53786177-53785725 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 268 |
| Conread position: | 122-545 |
| Cow position: | chr18:36508653-36508220 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 269 |
| Conread position: | 122-546 |
| Cow position: | chr18:14416296-14415862 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 42 |
| Conread position: | 122-546 |
| Cow position: | chr18:16176297-16176720 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 264 |
| Conread position: | 122-546 |
| Cow position: | chr18:23797968-23797537 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 264 |
| Conread position: | 122-546 |
| Cow position: | chr18:40478703-40478269 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 38 |
| Conread position: | 122-546 |
| Cow position: | chr18:41840504-41840939 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 264 |
| Conread position: | 136-310 |
| Cow position: | chr18:46877708-46877881 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 137-449 |
| Cow position: | chr18:114689-114380 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 181, 65 |
| Conread position: | 137-538 |
| Cow position: | chr18:33269125-33268735 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 200 |
| Conread position: | 137-538 |
| Cow position: | chr18:51258283-51257877 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 233 |
| Conread position: | 137-540 |
| Cow position: | chr18:51310885-51310478 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 254 |
| Conread position: | 137-544 |
| Cow position: | chr18:51689924-51689513 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 274 |
| Conread position: | 137-545 |
| Cow position: | chr18:51341986-51341572 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 227 |
| Conread position: | 141-475 |
| Cow position: | chr18:52651215-52650890 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 97 |
| Conread position: | 146-277 |
| Cow position: | chr18:45959008-45958878 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 146-504 |
| Cow position: | chr18:5980721-5980371 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 6, 32 |
| Conread position: | 148-309 |
| Cow position: | chr18:27987349-27987188 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 148-485 |
| Cow position: | chr18:14130673-14130338 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 243 |
| Conread position: | 148-540 |
| Cow position: | chr18:33359154-33358759 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 90 |
| Conread position: | 148-543 |
| Cow position: | chr18:27838027-27838414 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 214 |
| Conread position: | 148-546 |
| Cow position: | chr18:33336151-33335754 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 78 |
| Conread position: | 148-546 |
| Cow position: | chr18:37505352-37504948 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 12 |
| Conread position: | 148-548 |
| Cow position: | chr18:51481128-51480721 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 211 |
| Conread position: | 149-546 |
| Cow position: | chr18:28973615-28974017 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 215 |
| Conread position: | 149-547 |
| Cow position: | chr18:39748866-39748463 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 231 |
| Conread position: | 150-356 |
| Cow position: | chr18:18089186-18089394 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 164 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 165, 173 |
| Conread position: | 154-521 |
| Cow position: | chr18:44601803-44601449 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 14, 19 |
| Conread position: | 154-542 |
| Cow position: | chr18:9186492-9186875 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 164, 71 |
| Conread position: | 155-546 |
| Cow position: | chr18:54024078-54024473 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 129 |
| Conread position: | 157-352 |
| Cow position: | chr18:32652499-32652302 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 158 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 167-376 |
| Cow position: | chr18:25350935-25350724 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 187-545 |
| Cow position: | chr18:43201304-43200951 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 251 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 125, 194 |
| Conread position: | 212-548 |
| Cow position: | chr18:16659793-16660120 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 247 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 110, 56 |
| Conread position: | 273-540 |
| Cow position: | chr18:17992401-17992670 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 46, 138 |
| Conread position: | 277-545 |
| Cow position: | chr18:44621919-44621645 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 41, 87 |
| Conread position: | 317-546 |
| Cow position: | chr18:27987145-27986914 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 87 |
Show alignments to all cow chromosomes.