Cow genome map
| Conread name: | Pig2-119G18 |
| Conread position: | 1-277 |
| Cow position: | chr21:30226544-30226259 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 63 |
| Conread position: | 1-540 |
| Cow position: | chr21:2540882-2541443 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 63 |
| Conread position: | 1-540 |
| Cow position: | chr21:23812404-23811848 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 404 |
| Conread position: | 15-546 |
| Cow position: | chr21:4184026-4183493 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 42 |
| Conread position: | 18-263 |
| Cow position: | chr21:359543-359288 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 89, 32 |
| Conread position: | 22-538 |
| Cow position: | chr21:35596868-35596342 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 38-545 |
| Cow position: | chr21:9892095-9891570 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 57 |
| Conread position: | 64-530 |
| Cow position: | chr21:4077295-4076827 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 12 |
| Conread position: | 80-538 |
| Cow position: | chr21:2788548-2789017 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 80-540 |
| Cow position: | chr21:13123561-13124027 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 94-385 |
| Cow position: | chr21:3797939-3798240 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 279 |
| Conread position: | 94-517 |
| Cow position: | chr21:6339998-6339562 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 279 |
| Conread position: | 94-540 |
| Cow position: | chr21:4457258-4456802 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 297 |
| Conread position: | 94-545 |
| Cow position: | chr21:2476109-2476544 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 94-545 |
| Cow position: | chr21:4091081-4090617 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 278 |
| Conread position: | 94-545 |
| Cow position: | chr21:12055569-12056034 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 279 |
| Conread position: | 94-545 |
| Cow position: | chr21:26638033-26638497 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 279 |
| Conread position: | 94-546 |
| Cow position: | chr21:7267105-7267575 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 287 |
| Conread position: | 94-546 |
| Cow position: | chr21:39425495-39425029 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 265 |
| Conread position: | 95-255 |
| Cow position: | chr21:34258557-34258728 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 95-544 |
| Cow position: | chr21:34293447-34292985 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 73 |
| Conread position: | 98-545 |
| Cow position: | chr21:11453228-11453690 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 291 |
| Conread position: | 107-268 |
| Cow position: | chr21:3615730-3615561 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 16, 79 |
| Conread position: | 110-547 |
| Cow position: | chr21:3426891-3426450 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 28 |
| Conread position: | 111-546 |
| Cow position: | chr21:2416630-2416202 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 59 |
| Conread position: | 111-546 |
| Cow position: | chr21:4589579-4590024 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 90 |
| Conread position: | 122-313 |
| Cow position: | chr21:35144157-35143972 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 28, 81 |
| Conread position: | 122-376 |
| Cow position: | chr21:18820029-18820286 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 23, 44 |
| Conread position: | 122-543 |
| Cow position: | chr21:2883347-2883779 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 290 |
| Conread position: | 122-545 |
| Cow position: | chr21:30599525-30599952 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 122 |
| Conread position: | 123-545 |
| Cow position: | chr21:48116501-48116074 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 168 |
| Conread position: | 136-521 |
| Cow position: | chr21:23601571-23601191 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 240, 18 |
| Conread position: | 137-347 |
| Cow position: | chr21:26650421-26650209 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 181, 0 |
| Conread position: | 137-545 |
| Cow position: | chr21:37045290-37044879 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 204 |
| Conread position: | 137-545 |
| Cow position: | chr21:46915968-46915553 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 227 |
| Conread position: | 137-546 |
| Cow position: | chr21:2511031-2510618 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 243 |
| Conread position: | 137-546 |
| Cow position: | chr21:2674232-2674661 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 97, 54 |
| Conread position: | 137-546 |
| Cow position: | chr21:11505976-11505552 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 236 |
| Conread position: | 142-545 |
| Cow position: | chr21:3779142-3778734 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 276 |
| Conread position: | 143-356 |
| Cow position: | chr21:6699208-6699415 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 177, 35 |
| Conread position: | 143-356 |
| Cow position: | chr21:21926342-21926547 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 172, 22 |
| Conread position: | 143-540 |
| Cow position: | chr21:2529755-2530154 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 10 |
| Conread position: | 144-546 |
| Cow position: | chr21:30562175-30561768 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 220 |
| Conread position: | 145-381 |
| Cow position: | chr21:4982661-4982418 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 96 |
| Conread position: | 145-544 |
| Cow position: | chr21:21914658-21914253 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 7, 80 |
| Conread position: | 146-540 |
| Cow position: | chr21:36715000-36714604 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 8, 32 |
| Conread position: | 148-388 |
| Cow position: | chr21:1191532-1191288 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 148-527 |
| Cow position: | chr21:47939840-47939466 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 169, 68 |
| Conread position: | 148-540 |
| Cow position: | chr21:47948477-47948081 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 45 |
| Conread position: | 148-544 |
| Cow position: | chr21:20744396-20744783 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 164, 232 |
| Conread position: | 148-546 |
| Cow position: | chr21:146291-145885 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 46 |
| Conread position: | 148-546 |
| Cow position: | chr21:10567037-10566641 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 30 |
| Conread position: | 148-546 |
| Cow position: | chr21:31559287-31559689 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 99 |
| Conread position: | 149-364 |
| Cow position: | chr21:26822866-26823083 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 85, 30 |
| Conread position: | 149-449 |
| Cow position: | chr21:40271309-40271611 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 257 |
| Conread position: | 149-547 |
| Cow position: | chr21:992661-993052 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 168, 198 |
| Conread position: | 150-546 |
| Cow position: | chr21:10850446-10850046 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 37 |
| Conread position: | 154-546 |
| Cow position: | chr21:1291828-1292211 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 173 |
| Conread position: | 157-548 |
| Cow position: | chr21:4222333-4222723 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 55 |
| Conread position: | 170-374 |
| Cow position: | chr21:2502233-2502032 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 71, 47 |
| Conread position: | 170-517 |
| Cow position: | chr21:8678013-8678364 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 194 |
| Conread position: | 182-540 |
| Cow position: | chr21:33755636-33755280 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 59, 87 |
| Conread position: | 222-548 |
| Cow position: | chr21:2769166-2769496 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 99, 184 |
| Conread position: | 233-547 |
| Cow position: | chr21:34258947-34259255 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 85, 13 |
| Conread position: | 253-546 |
| Cow position: | chr21:33251656-33251358 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 72, 127 |
| Conread position: | 260-540 |
| Cow position: | chr21:2716425-2716709 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 34, 105 |
| Conread position: | 280-540 |
| Cow position: | chr21:3615530-3615264 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 14, 101 |
| Conread position: | 287-546 |
| Cow position: | chr21:26818791-26819056 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 31, 77 |
| Conread position: | 317-545 |
| Cow position: | chr21:27708961-27708728 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 71, 0 |
Show alignments to all cow chromosomes.