Cow genome map
| Conread name: | Pig2-119G18 |
| Conread position: | 1-302 |
| Cow position: | chr22:1283299-1283608 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-540 |
| Cow position: | chr22:13917862-13917302 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 426 |
| Conread position: | 5-548 |
| Cow position: | chr22:6503323-6503879 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 373 |
| Conread position: | 14-540 |
| Cow position: | chr22:11031305-11030760 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 393 |
| Conread position: | 15-277 |
| Cow position: | chr22:23853673-23853399 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 92, 180 |
| Conread position: | 15-540 |
| Cow position: | chr22:3306389-3306933 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 213 |
| Conread position: | 15-544 |
| Cow position: | chr22:7277860-7277318 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 75 |
| Conread position: | 15-548 |
| Cow position: | chr22:8135865-8136405 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 47 |
| Conread position: | 29-546 |
| Cow position: | chr22:5932680-5933191 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 36 |
| Conread position: | 33-546 |
| Cow position: | chr22:44609918-44609399 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 187 |
| Conread position: | 34-547 |
| Cow position: | chr22:1321910-1321404 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 27 |
| Conread position: | 35-354 |
| Cow position: | chr22:310096-309766 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 133 |
| Conread position: | 38-464 |
| Cow position: | chr22:1048721-1048288 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 289 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 20, 42 |
| Conread position: | 40-546 |
| Cow position: | chr22:34598979-34598469 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 51-372 |
| Cow position: | chr22:41419387-41419724 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 52-547 |
| Cow position: | chr22:36737056-36736555 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 24 |
| Conread position: | 56-518 |
| Cow position: | chr22:34607357-34606885 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 300 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 30, 6 |
| Conread position: | 59-514 |
| Cow position: | chr22:1270236-1270684 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 177 |
| Conread position: | 64-545 |
| Cow position: | chr22:1879083-1878585 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 311 |
| Conread position: | 70-546 |
| Cow position: | chr22:35672075-35672562 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 16 |
| Conread position: | 94-324 |
| Cow position: | chr22:18027538-18027300 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 34, 167 |
| Conread position: | 94-350 |
| Cow position: | chr22:117583-117854 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 94-374 |
| Cow position: | chr22:6020921-6020630 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 94-455 |
| Cow position: | chr22:42771714-42771361 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 29, 212 |
| Conread position: | 94-488 |
| Cow position: | chr22:20240583-20240988 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 94-539 |
| Cow position: | chr22:5672996-5672537 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 332 |
| Conread position: | 94-540 |
| Cow position: | chr22:39881917-39882376 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 295 |
| Conread position: | 94-542 |
| Cow position: | chr22:326911-327356 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 127 |
| Conread position: | 94-545 |
| Cow position: | chr22:3278097-3278560 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 277 |
| Conread position: | 94-545 |
| Cow position: | chr22:27309514-27309980 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 279 |
| Conread position: | 94-545 |
| Cow position: | chr22:44490146-44489680 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 295 |
| Conread position: | 94-546 |
| Cow position: | chr22:537360-536894 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 295 |
| Conread position: | 95-461 |
| Cow position: | chr22:10909574-10909958 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 5, 202 |
| Conread position: | 98-540 |
| Cow position: | chr22:37131888-37131449 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 34 |
| Conread position: | 111-488 |
| Cow position: | chr22:5308342-5307957 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 105 |
| Conread position: | 111-546 |
| Cow position: | chr22:46853581-46853135 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 98 |
| Conread position: | 117-548 |
| Cow position: | chr22:42991405-42990963 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 269 |
| Conread position: | 118-277 |
| Cow position: | chr22:45879377-45879543 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 122-544 |
| Cow position: | chr22:44934207-44933775 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 225 |
| Conread position: | 122-546 |
| Cow position: | chr22:15313724-15314155 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 231 |
| Conread position: | 122-546 |
| Cow position: | chr22:19143471-19143906 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 248 |
| Conread position: | 122-546 |
| Cow position: | chr22:21589552-21589126 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 294 |
| Conread position: | 123-547 |
| Cow position: | chr22:15851546-15851127 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 82 |
| Conread position: | 131-544 |
| Cow position: | chr22:44369414-44369825 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 54 |
| Conread position: | 132-352 |
| Cow position: | chr22:35942998-35943215 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 190, 50 |
| Conread position: | 137-449 |
| Cow position: | chr22:46581381-46581692 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 185, 80 |
| Conread position: | 137-510 |
| Cow position: | chr22:36533536-36533907 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 207 |
| Conread position: | 137-510 |
| Cow position: | chr22:46547457-46547834 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 243 |
| Conread position: | 137-526 |
| Cow position: | chr22:16200681-16200299 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 242 |
| Conread position: | 137-540 |
| Cow position: | chr22:32485146-32485537 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 45 |
| Conread position: | 137-541 |
| Cow position: | chr22:1319604-1319195 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 227 |
| Conread position: | 137-545 |
| Cow position: | chr22:693833-693425 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 226 |
| Conread position: | 137-545 |
| Cow position: | chr22:10546852-10546438 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 227 |
| Conread position: | 137-546 |
| Cow position: | chr22:5233098-5233513 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 227 |
| Conread position: | 137-547 |
| Cow position: | chr22:525486-525882 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 219 |
| Conread position: | 143-540 |
| Cow position: | chr22:157706-158103 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 148 |
| Conread position: | 144-545 |
| Cow position: | chr22:31334838-31335239 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 32 |
| Conread position: | 147-540 |
| Cow position: | chr22:36275006-36274609 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 265 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 94, 25 |
| Conread position: | 148-374 |
| Cow position: | chr22:44396646-44396419 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 177, 95 |
| Conread position: | 148-545 |
| Cow position: | chr22:31313537-31313135 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 232 |
| Conread position: | 148-546 |
| Cow position: | chr22:560509-560906 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 76 |
| Conread position: | 148-546 |
| Cow position: | chr22:17328543-17328946 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 232 |
| Conread position: | 148-546 |
| Cow position: | chr22:18816189-18816588 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 230 |
| Conread position: | 148-546 |
| Cow position: | chr22:36861334-36861737 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 232 |
| Conread position: | 148-546 |
| Cow position: | chr22:46635518-46635904 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 35, 45 |
| Conread position: | 148-548 |
| Cow position: | chr22:36183953-36183550 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 69 |
| Conread position: | 149-449 |
| Cow position: | chr22:8875182-8874887 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 169, 24 |
| Conread position: | 149-488 |
| Cow position: | chr22:15956509-15956837 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 233, 93 |
| Conread position: | 149-517 |
| Cow position: | chr22:870671-871033 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 166, 193 |
| Conread position: | 149-545 |
| Cow position: | chr22:39469328-39469725 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 231 |
| Conread position: | 149-546 |
| Cow position: | chr22:34168527-34168125 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 262 |
| Conread position: | 150-288 |
| Cow position: | chr22:38937889-38938027 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 151-514 |
| Cow position: | chr22:11782337-11782708 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 167, 14 |
| Conread position: | 153-546 |
| Cow position: | chr22:44352767-44353154 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 66 |
| Conread position: | 159-350 |
| Cow position: | chr22:37073028-37073221 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 159, 112 |
| Conread position: | 165-307 |
| Cow position: | chr22:31936521-31936663 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 170-545 |
| Cow position: | chr22:24950004-24949623 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 210 |
| Conread position: | 181-488 |
| Cow position: | chr22:44475407-44475108 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 137, 153 |
| Conread position: | 187-455 |
| Cow position: | chr22:45976126-45975863 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 128, 44 |
| Conread position: | 189-540 |
| Cow position: | chr22:33351323-33350969 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 121, 46 |
| Conread position: | 204-546 |
| Cow position: | chr22:27386291-27386638 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 176 |
| Conread position: | 220-372 |
| Cow position: | chr22:1860687-1860841 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 243-540 |
| Cow position: | chr22:1293395-1293697 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 68, 99 |
| Conread position: | 303-545 |
| Cow position: | chr22:6985296-6985048 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 15, 61 |
Show alignments to all cow chromosomes.