Cow genome map
| Conread name: | Pig2-119G18 |
| Conread position: | 1-540 |
| Cow position: | chr28:10618722-10619263 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 1-540 |
| Cow position: | chr28:21326182-21325634 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 113 |
| Conread position: | 2-284 |
| Cow position: | chr28:10071381-10071089 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 14, 230 |
| Conread position: | 2-526 |
| Cow position: | chr28:7789884-7790440 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 13 |
| Conread position: | 5-540 |
| Cow position: | chr28:21359400-21358859 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 396 |
| Conread position: | 15-349 |
| Cow position: | chr28:5797821-5797470 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 61 |
| Conread position: | 15-350 |
| Cow position: | chr28:2989319-2989679 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 352 |
| Conread position: | 15-540 |
| Cow position: | chr28:5813072-5812552 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 51 |
| Conread position: | 23-504 |
| Cow position: | chr28:34649323-34648824 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 318 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 36, 230 |
| Conread position: | 34-356 |
| Cow position: | chr28:2845811-2846142 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 35, 60 |
| Conread position: | 63-544 |
| Cow position: | chr28:2592248-2591756 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 31 |
| Conread position: | 72-306 |
| Cow position: | chr28:485240-485480 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 56, 13 |
| Conread position: | 80-540 |
| Cow position: | chr28:9154969-9155441 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 14 |
| Conread position: | 92-546 |
| Cow position: | chr28:8721143-8721607 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 100 |
| Conread position: | 94-345 |
| Cow position: | chr28:17324041-17324309 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 29, 87 |
| Conread position: | 94-442 |
| Cow position: | chr28:4380541-4380894 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 248 |
| Conread position: | 94-488 |
| Cow position: | chr28:2724589-2724993 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 277 |
| Conread position: | 94-545 |
| Cow position: | chr28:7822561-7822095 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 279 |
| Conread position: | 94-545 |
| Cow position: | chr28:13440573-13441039 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 279 |
| Conread position: | 94-545 |
| Cow position: | chr28:14750850-14750386 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 146 |
| Conread position: | 94-545 |
| Cow position: | chr28:24587738-24587271 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 279 |
| Conread position: | 94-546 |
| Cow position: | chr28:6780030-6780491 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 279 |
| Conread position: | 95-277 |
| Cow position: | chr28:13490453-13490262 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 106-548 |
| Cow position: | chr28:9954424-9953972 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 243 |
| Conread position: | 108-546 |
| Cow position: | chr28:1505138-1504693 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 304 |
| Conread position: | 108-546 |
| Cow position: | chr28:24667868-24667419 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 291 |
| Conread position: | 117-376 |
| Cow position: | chr28:29820011-29819744 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 122-374 |
| Cow position: | chr28:5751433-5751694 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 67 |
| Conread position: | 122-545 |
| Cow position: | chr28:10581714-10582147 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 191 |
| Conread position: | 122-545 |
| Cow position: | chr28:15377720-15378153 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 88 |
| Conread position: | 122-546 |
| Cow position: | chr28:1814595-1815030 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 290 |
| Conread position: | 122-546 |
| Cow position: | chr28:5566126-5565699 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 136 |
| Conread position: | 122-546 |
| Cow position: | chr28:12409953-12410372 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 103 |
| Conread position: | 124-539 |
| Cow position: | chr28:7740751-7740340 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 257 |
| Conread position: | 136-505 |
| Cow position: | chr28:9136799-9137169 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 85 |
| Conread position: | 137-350 |
| Cow position: | chr28:1931733-1931948 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 166 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 181, 0 |
| Conread position: | 137-545 |
| Cow position: | chr28:1953381-1952968 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 246 |
| Conread position: | 137-546 |
| Cow position: | chr28:782646-782236 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 248 |
| Conread position: | 137-546 |
| Cow position: | chr28:15920213-15920628 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 244 |
| Conread position: | 143-546 |
| Cow position: | chr28:7002234-7001826 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 10 |
| Conread position: | 144-548 |
| Cow position: | chr28:3192547-3192955 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 220 |
| Conread position: | 146-364 |
| Cow position: | chr28:5800862-5800649 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 176, 43 |
| Conread position: | 148-332 |
| Cow position: | chr28:18101703-18101889 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 148-364 |
| Cow position: | chr28:1167641-1167859 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 148-539 |
| Cow position: | chr28:1387160-1387550 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 29 |
| Conread position: | 148-545 |
| Cow position: | chr28:13460210-13459809 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 232 |
| Conread position: | 148-546 |
| Cow position: | chr28:2083836-2083442 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 24 |
| Conread position: | 148-546 |
| Cow position: | chr28:5114571-5114962 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 167 |
| Conread position: | 148-546 |
| Cow position: | chr28:17388722-17388319 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 232 |
| Conread position: | 148-546 |
| Cow position: | chr28:18520219-18520623 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 198 |
| Conread position: | 148-546 |
| Cow position: | chr28:22260910-22261313 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 232 |
| Conread position: | 148-546 |
| Cow position: | chr28:33252552-33252155 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 46 |
| Conread position: | 148-547 |
| Cow position: | chr28:8378809-8378402 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 236 |
| Conread position: | 149-355 |
| Cow position: | chr28:12232762-12232967 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 169, 66 |
| Conread position: | 149-374 |
| Cow position: | chr28:34594218-34593991 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 149-546 |
| Cow position: | chr28:17667274-17667674 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 231 |
| Conread position: | 149-546 |
| Cow position: | chr28:32792141-32792541 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 15 |
| Conread position: | 150-300 |
| Cow position: | chr28:22828252-22828104 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 154-546 |
| Cow position: | chr28:14705437-14705834 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 51 |
| Conread position: | 154-547 |
| Cow position: | chr28:12150539-12150152 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 58 |
| Conread position: | 159-542 |
| Cow position: | chr28:7901584-7901193 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 256 |
| Conread position: | 219-546 |
| Cow position: | chr28:7817373-7817059 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 92, 149 |
| Conread position: | 226-546 |
| Cow position: | chr28:15951142-15950819 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 138 |
| Conread position: | 228-545 |
| Cow position: | chr28:26426117-26426435 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 92, 182 |
Show alignments to all cow chromosomes.