Cow genome map
| Conread name: | Pig2-119G18 |
| Conread position: | 2-542 |
| Cow position: | chr29:1715610-1715056 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 8 |
| Conread position: | 14-536 |
| Cow position: | chr29:15949839-15950370 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 15 |
| Conread position: | 15-548 |
| Cow position: | chr29:104913-104374 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 355 |
| Conread position: | 22-518 |
| Cow position: | chr29:27980583-27981085 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 32-547 |
| Cow position: | chr29:27040444-27040961 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 55 |
| Conread position: | 46-540 |
| Cow position: | chr29:30811845-30811342 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 190 |
| Conread position: | 64-364 |
| Cow position: | chr29:410229-410537 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 69-545 |
| Cow position: | chr29:27250051-27250531 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 23 |
| Conread position: | 72-541 |
| Cow position: | chr29:669769-670246 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 13 |
| Conread position: | 72-545 |
| Cow position: | chr29:35297162-35296678 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 13 |
| Conread position: | 77-548 |
| Cow position: | chr29:7841081-7840597 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 86-449 |
| Cow position: | chr29:18856668-18857041 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 8 |
| Conread position: | 89-540 |
| Cow position: | chr29:17663169-17662733 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 275 |
| Conread position: | 94-540 |
| Cow position: | chr29:11049547-11049092 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 167 |
| Conread position: | 94-540 |
| Cow position: | chr29:21543100-21543556 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 178 |
| Conread position: | 94-544 |
| Cow position: | chr29:610343-610807 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 279 |
| Conread position: | 95-548 |
| Cow position: | chr29:16770392-16769934 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 261 |
| Conread position: | 106-262 |
| Cow position: | chr29:21426773-21426932 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 106-548 |
| Cow position: | chr29:43365745-43366195 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 29 |
| Conread position: | 112-540 |
| Cow position: | chr29:10847844-10848301 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 323 |
| Conread position: | 113-547 |
| Cow position: | chr29:5957854-5957405 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 277 |
| Conread position: | 117-546 |
| Cow position: | chr29:45459959-45459520 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 150 |
| Conread position: | 122-484 |
| Cow position: | chr29:45587122-45587478 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 155 |
| Conread position: | 122-531 |
| Cow position: | chr29:23976078-23975655 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 122-545 |
| Cow position: | chr29:2690138-2689707 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 54 |
| Conread position: | 122-546 |
| Cow position: | chr29:10823731-10824152 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 238 |
| Conread position: | 122-546 |
| Cow position: | chr29:19623009-19623443 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 264 |
| Conread position: | 122-546 |
| Cow position: | chr29:19653346-19652912 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 265 |
| Conread position: | 122-546 |
| Cow position: | chr29:20251397-20250963 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 89 |
| Conread position: | 122-546 |
| Cow position: | chr29:34799570-34800006 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 265 |
| Conread position: | 124-498 |
| Cow position: | chr29:14586158-14585780 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 160 |
| Conread position: | 136-347 |
| Cow position: | chr29:16016935-16017143 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 186, 64 |
| Conread position: | 137-321 |
| Cow position: | chr29:34925696-34925507 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 137-357 |
| Cow position: | chr29:2750204-2750416 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 188, 48 |
| Conread position: | 137-535 |
| Cow position: | chr29:19885287-19884883 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 227 |
| Conread position: | 137-547 |
| Cow position: | chr29:35196881-35196476 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 85 |
| Conread position: | 142-548 |
| Cow position: | chr29:32316254-32315841 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 223 |
| Conread position: | 145-545 |
| Cow position: | chr29:15894640-15895047 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 220 |
| Conread position: | 148-371 |
| Cow position: | chr29:13582274-13582053 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 170, 29 |
| Conread position: | 148-531 |
| Cow position: | chr29:38227186-38226820 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 141 |
| Conread position: | 148-544 |
| Cow position: | chr29:11855810-11855405 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 94, 203 |
| Conread position: | 148-545 |
| Cow position: | chr29:26164616-26165018 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 232 |
| Conread position: | 148-546 |
| Cow position: | chr29:2100051-2099648 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 232 |
| Conread position: | 148-546 |
| Cow position: | chr29:6266295-6266690 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 200 |
| Conread position: | 148-546 |
| Cow position: | chr29:7431012-7431412 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 28 |
| Conread position: | 148-546 |
| Cow position: | chr29:10648045-10648444 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 232 |
| Conread position: | 148-546 |
| Cow position: | chr29:16022736-16022334 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 232 |
| Conread position: | 148-546 |
| Cow position: | chr29:25932338-25932740 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 232 |
| Conread position: | 148-546 |
| Cow position: | chr29:40502776-40503175 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 29 |
| Conread position: | 148-546 |
| Cow position: | chr29:43322761-43322363 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 69 |
| Conread position: | 148-547 |
| Cow position: | chr29:2841167-2841566 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 104 |
| Conread position: | 148-548 |
| Cow position: | chr29:32540016-32539612 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 123 |
| Conread position: | 149-374 |
| Cow position: | chr29:2466129-2466358 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 149-374 |
| Cow position: | chr29:9643551-9643780 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 70, 93 |
| Conread position: | 149-546 |
| Cow position: | chr29:39079507-39079902 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 203 |
| Conread position: | 150-547 |
| Cow position: | chr29:14013668-14013276 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 232, 84 |
| Conread position: | 150-547 |
| Cow position: | chr29:14072743-14073135 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 232, 84 |
| Conread position: | 154-503 |
| Cow position: | chr29:11841862-11841514 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 157, 117 |
| Conread position: | 155-374 |
| Cow position: | chr29:42650483-42650263 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 160, 114 |
| Conread position: | 155-374 |
| Cow position: | chr29:42802343-42802123 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 160, 114 |
| Conread position: | 156-546 |
| Cow position: | chr29:48280-48672 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 224 |
| Conread position: | 157-375 |
| Cow position: | chr29:12796168-12796388 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 192-540 |
| Cow position: | chr29:13852863-13853211 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 247 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 16, 8 |
| Conread position: | 194-545 |
| Cow position: | chr29:16109887-16109533 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 124, 149 |
| Conread position: | 205-545 |
| Cow position: | chr29:15969002-15969344 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 240 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 113, 30 |
| Conread position: | 206-541 |
| Cow position: | chr29:4634828-4635158 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 112, 33 |
| Conread position: | 242-545 |
| Cow position: | chr29:28060552-28060862 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 221 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 76, 175 |
| Conread position: | 250-546 |
| Cow position: | chr29:21246674-21246372 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 64, 130 |
| Conread position: | 254-541 |
| Cow position: | chr29:21426958-21427245 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 69, 18 |
| Conread position: | 266-545 |
| Cow position: | chr29:31181212-31180927 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 52, 114 |
| Conread position: | 269-505 |
| Cow position: | chr29:5983095-5983334 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 46, 96 |
Show alignments to all cow chromosomes.