Cow genome map

Conread name: Pig2-119G18

Conread position: 2-265
Cow position: chr6:43608035-43608310 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 194
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 14, 0

Conread position: 2-540
Cow position: chr6:37116460-37115907 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 211

Conread position: 5-244
Cow position: chr6:10641483-10641229 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 181
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 11, 192

Conread position: 5-540
Cow position: chr6:38232600-38232044 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 273

Conread position: 6-355
Cow position: chr6:6476168-6476526 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 81

Conread position: 10-381
Cow position: chr6:51190812-51190433 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 248
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 7, 93

Conread position: 12-364
Cow position: chr6:66540100-66539761 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 232
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 131, 71

Conread position: 13-540
Cow position: chr6:37642700-37642170 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 350
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 11, 185

Conread position: 14-540
Cow position: chr6:35420297-35420811 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 219

Conread position: 15-539
Cow position: chr6:59740746-59741281 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 355
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 54, 20

Conread position: 15-548
Cow position: chr6:1100275-1100825 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 354
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 54, 79

Conread position: 28-547
Cow position: chr6:7179394-7179917 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 348
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 41, 258

Conread position: 33-448
Cow position: chr6:32330501-32330928 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 28

Conread position: 46-543
Cow position: chr6:62397450-62396926 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 330
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 16, 345

Conread position: 50-548
Cow position: chr6:10630718-10630227 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 317
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 7, 13

Conread position: 70-356
Cow position: chr6:40315295-40315012 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 199
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 79, 24

Conread position: 73-540
Cow position: chr6:59919038-59919510 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 7

Conread position: 76-547
Cow position: chr6:13847278-13846808 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 19

Conread position: 93-546
Cow position: chr6:13317269-13317724 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 42

Conread position: 94-364
Cow position: chr6:3149232-3148951 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 94-376
Cow position: chr6:39908755-39908464 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 215
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 34, 201

Conread position: 94-540
Cow position: chr6:11277481-11277932 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 44

Conread position: 94-541
Cow position: chr6:10558432-10558888 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 295

Conread position: 94-544
Cow position: chr6:68027020-68026545 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 94-545
Cow position: chr6:2374928-2374469 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 295

Conread position: 94-545
Cow position: chr6:2554934-2554470 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 251

Conread position: 94-545
Cow position: chr6:13944137-13943674 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 265

Conread position: 94-545
Cow position: chr6:17598051-17598517 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 295

Conread position: 94-545
Cow position: chr6:27169809-27169339 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 299

Conread position: 94-545
Cow position: chr6:43617943-43617479 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 148

Conread position: 94-546
Cow position: chr6:16052108-16051649 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 279

Conread position: 94-546
Cow position: chr6:44029267-44028810 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 244

Conread position: 94-546
Cow position: chr6:65928164-65927699 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 193

Conread position: 94-548
Cow position: chr6:30479327-30478852 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 45

Conread position: 95-545
Cow position: chr6:13104286-13103821 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 295

Conread position: 98-545
Cow position: chr6:58408688-58409147 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 275

Conread position: 105-547
Cow position: chr6:28063550-28063099 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 139

Conread position: 111-548
Cow position: chr6:36526254-36525803 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 278

Conread position: 122-505
Cow position: chr6:24239262-24238869 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 264

Conread position: 122-545
Cow position: chr6:8761108-8761537 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 43

Conread position: 122-545
Cow position: chr6:17046252-17045824 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 136

Conread position: 122-546
Cow position: chr6:702147-701716 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 259

Conread position: 122-546
Cow position: chr6:3889282-3889717 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 122-546
Cow position: chr6:5951049-5951474 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 163

Conread position: 122-546
Cow position: chr6:8201934-8201495 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 213

Conread position: 122-546
Cow position: chr6:15140983-15141413 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 266

Conread position: 122-546
Cow position: chr6:27529810-27530239 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 84

Conread position: 122-546
Cow position: chr6:65841781-65841357 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 195

Conread position: 122-546
Cow position: chr6:65881064-65880629 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 264

Conread position: 136-356
Cow position: chr6:31568628-31568844 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 155, 28

Conread position: 137-317
Cow position: chr6:40251839-40251659 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 137-374
Cow position: chr6:7866575-7866814 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 0

Conread position: 137-375
Cow position: chr6:64715405-64715167 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 115

Conread position: 137-504
Cow position: chr6:1411764-1412131 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 227

Conread position: 137-540
Cow position: chr6:13276976-13276571 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 163

Conread position: 137-540
Cow position: chr6:19454091-19453691 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 33

Conread position: 137-545
Cow position: chr6:1405062-1405474 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 227

Conread position: 137-545
Cow position: chr6:26670682-26671101 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 145

Conread position: 137-545
Cow position: chr6:28491338-28491751 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 58

Conread position: 137-545
Cow position: chr6:34127529-34127114 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 384

Conread position: 137-545
Cow position: chr6:44150380-44150795 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 227

Conread position: 137-545
Cow position: chr6:65821950-65822364 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 58

Conread position: 137-546
Cow position: chr6:331293-331703 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 67

Conread position: 137-547
Cow position: chr6:33389014-33388595 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 215

Conread position: 137-548
Cow position: chr6:6566781-6566373 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 249

Conread position: 141-544
Cow position: chr6:35876546-35876954 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 239

Conread position: 143-545
Cow position: chr6:40554418-40554829 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 10

Conread position: 143-547
Cow position: chr6:29311660-29311252 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 10

Conread position: 144-540
Cow position: chr6:42927551-42927153 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 243
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 174, 99

Conread position: 147-380
Cow position: chr6:60170200-60170437 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 160
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 181

Conread position: 148-376
Cow position: chr6:47043034-47043269 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 148-460
Cow position: chr6:25214423-25214110 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 209

Conread position: 148-518
Cow position: chr6:28474867-28474499 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 238
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 174, 198

Conread position: 148-540
Cow position: chr6:33460028-33459632 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 263

Conread position: 148-544
Cow position: chr6:3488234-3488636 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 30

Conread position: 148-544
Cow position: chr6:28275147-28274748 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 256

Conread position: 148-546
Cow position: chr6:913807-913391 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 0

Conread position: 148-546
Cow position: chr6:3277785-3278188 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 232

Conread position: 148-546
Cow position: chr6:20560947-20561347 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 194

Conread position: 148-546
Cow position: chr6:21971851-21971436 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 244

Conread position: 148-546
Cow position: chr6:27469413-27469018 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 30

Conread position: 148-546
Cow position: chr6:34892841-34893247 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 213

Conread position: 148-546
Cow position: chr6:55544162-55544564 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 232

Conread position: 148-547
Cow position: chr6:15280387-15280780 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 238

Conread position: 148-548
Cow position: chr6:30275013-30275418 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 232

Conread position: 149-384
Cow position: chr6:17099536-17099772 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 168
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 20, 34

Conread position: 149-508
Cow position: chr6:35433693-35433345 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 232
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 171, 29

Conread position: 149-531
Cow position: chr6:66231958-66231583 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 256
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 30, 175

Conread position: 149-542
Cow position: chr6:16672544-16672152 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 250
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 135, 63

Conread position: 149-547
Cow position: chr6:41553174-41552783 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 263
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 156, 37

Conread position: 151-542
Cow position: chr6:43793606-43793993 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 277
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 14, 54

Conread position: 157-544
Cow position: chr6:57869847-57870240 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 256

Conread position: 187-374
Cow position: chr6:12092766-12092957 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 131, 144

Conread position: 193-547
Cow position: chr6:49520260-49520637 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 263
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 123, 340

Conread position: 245-541
Cow position: chr6:10641194-10640896 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 195
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 70, 162

Conread position: 257-546
Cow position: chr6:50497402-50497696 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 204
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 58, 123

Conread position: 307-546
Cow position: chr6:1823250-1823487 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 144, 7

Conread position: 425-541
Cow position: chr6:6476568-6476686 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 26, 44

Show alignments to all cow chromosomes.