Cow genome map
| Conread name: | Pig2-121K23 |
| Conread position: | 2-521 |
| Cow position: | chr11:42428778-42429302 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 114 |
| Conread position: | 4-153 |
| Cow position: | chr11:9416235-9416093 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 91, 58 |
| Conread position: | 4-229 |
| Cow position: | chr11:17280792-17280569 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 90, 62 |
| Conread position: | 4-231 |
| Cow position: | chr11:7687366-7687592 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 63, 152 |
| Conread position: | 4-326 |
| Cow position: | chr11:32071559-32071877 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 108 |
| Conread position: | 4-343 |
| Cow position: | chr11:28050337-28050003 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 66 |
| Conread position: | 4-431 |
| Cow position: | chr11:44157788-44157357 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 79 |
| Conread position: | 4-432 |
| Cow position: | chr11:58133817-58134251 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 79 |
| Conread position: | 4-446 |
| Cow position: | chr11:29234200-29233762 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 129 |
| Conread position: | 4-452 |
| Cow position: | chr11:4271422-4270970 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 79 |
| Conread position: | 4-452 |
| Cow position: | chr11:10210518-10210061 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 301 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 139, 64 |
| Conread position: | 4-452 |
| Cow position: | chr11:37093617-37093160 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 85 |
| Conread position: | 4-452 |
| Cow position: | chr11:44861080-44860628 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 203 |
| Conread position: | 4-500 |
| Cow position: | chr11:41171248-41170744 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 236 |
| Conread position: | 4-501 |
| Cow position: | chr11:33044672-33044171 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 80 |
| Conread position: | 4-503 |
| Cow position: | chr11:19103041-19102535 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 82 |
| Conread position: | 4-503 |
| Cow position: | chr11:26125483-26124980 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 79 |
| Conread position: | 4-511 |
| Cow position: | chr11:8887705-8887199 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 121 |
| Conread position: | 4-521 |
| Cow position: | chr11:12351618-12351095 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 85 |
| Conread position: | 4-521 |
| Cow position: | chr11:21466521-21467047 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 213 |
| Conread position: | 4-521 |
| Cow position: | chr11:25527026-25527528 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 43 |
| Conread position: | 4-521 |
| Cow position: | chr11:37492199-37491676 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 36 |
| Conread position: | 4-522 |
| Cow position: | chr11:28063135-28063646 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 206 |
| Conread position: | 4-523 |
| Cow position: | chr11:10846889-10847412 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 82 |
| Conread position: | 4-523 |
| Cow position: | chr11:11987565-11988077 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 82 |
| Conread position: | 4-523 |
| Cow position: | chr11:23876749-23877272 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 82 |
| Conread position: | 4-523 |
| Cow position: | chr11:29669184-29668661 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 82 |
| Conread position: | 4-523 |
| Cow position: | chr11:43515186-43514660 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 412 |
| Conread position: | 4-526 |
| Cow position: | chr11:9659949-9659413 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 56 |
| Conread position: | 4-529 |
| Cow position: | chr11:17108241-17107708 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 213 |
| Conread position: | 4-529 |
| Cow position: | chr11:37477671-37477141 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 79 |
| Conread position: | 4-531 |
| Cow position: | chr11:85394364-85393834 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 82 |
| Conread position: | 4-538 |
| Cow position: | chr11:3492457-3492998 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 83 |
| Conread position: | 4-538 |
| Cow position: | chr11:19064805-19064262 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 83 |
| Conread position: | 4-538 |
| Cow position: | chr11:32450312-32450854 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 83 |
| Conread position: | 4-538 |
| Cow position: | chr11:52418836-52419375 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 79 |
| Conread position: | 4-538 |
| Cow position: | chr11:67847122-67846584 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 22 |
| Conread position: | 4-542 |
| Cow position: | chr11:8262251-8261713 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 78 |
| Conread position: | 4-543 |
| Cow position: | chr11:34020353-34020884 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 51 |
| Conread position: | 4-544 |
| Cow position: | chr11:44230577-44231105 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 60 |
| Conread position: | 5-239 |
| Cow position: | chr11:11126365-11126597 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 88, 56 |
| Conread position: | 5-257 |
| Cow position: | chr11:77235207-77235470 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 5-403 |
| Cow position: | chr11:15998344-15998744 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 94 |
| Conread position: | 5-450 |
| Cow position: | chr11:30304695-30305130 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 63 |
| Conread position: | 5-503 |
| Cow position: | chr11:77729080-77728569 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 157 |
| Conread position: | 5-526 |
| Cow position: | chr11:53288009-53287481 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 81 |
| Conread position: | 5-538 |
| Cow position: | chr11:1496623-1496087 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 72 |
| Conread position: | 5-538 |
| Cow position: | chr11:57628601-57628059 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 82 |
| Conread position: | 5-538 |
| Cow position: | chr11:67449943-67450485 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 81 |
| Conread position: | 6-523 |
| Cow position: | chr11:12358975-12358455 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 83 |
| Conread position: | 7-393 |
| Cow position: | chr11:13581527-13581145 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 63, 145 |
| Conread position: | 7-511 |
| Cow position: | chr11:7113049-7113553 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 89 |
| Conread position: | 7-532 |
| Cow position: | chr11:9607127-9606597 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 79 |
| Conread position: | 9-538 |
| Cow position: | chr11:20921296-20920758 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 208 |
| Conread position: | 13-522 |
| Cow position: | chr11:39833208-39833723 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 141 |
| Conread position: | 14-469 |
| Cow position: | chr11:50029240-50028769 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 306 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 51, 98 |
| Conread position: | 25-234 |
| Cow position: | chr11:31414771-31414562 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 37, 178 |
| Conread position: | 26-523 |
| Cow position: | chr11:72110494-72109995 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 60 |
| Conread position: | 28-494 |
| Cow position: | chr11:43731889-43732346 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 29 |
| Conread position: | 38-521 |
| Cow position: | chr11:75919900-75920372 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 96 |
| Conread position: | 47-538 |
| Cow position: | chr11:15983111-15983611 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 40 |
| Conread position: | 51-347 |
| Cow position: | chr11:10218065-10217773 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 57-218 |
| Cow position: | chr11:19220263-19220103 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 77-354 |
| Cow position: | chr11:17924922-17924640 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 218 |
| Conread position: | 88-404 |
| Cow position: | chr11:13067479-13067170 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 129 |
| Conread position: | 88-404 |
| Cow position: | chr11:13162525-13162834 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 129 |
| Conread position: | 97-260 |
| Cow position: | chr11:21441283-21441443 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 204-525 |
| Cow position: | chr11:45655642-45655961 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 25, 107 |
| Conread position: | 214-544 |
| Cow position: | chr11:48084773-48085098 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 163 |
| Conread position: | 327-538 |
| Cow position: | chr11:33194778-33194566 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 91, 138 |
| Conread position: | 384-544 |
| Cow position: | chr11:30205087-30205239 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 29, 40 |
Show alignments to all cow chromosomes.