Cow genome map

Conread name: Pig2-121K23

Conread position: 1-521
Cow position: chr15:23157442-23156929 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 138

Conread position: 2-276
Cow position: chr15:6326784-6326522 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 184
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 92, 66

Conread position: 2-354
Cow position: chr15:45886192-45886535 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 243
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 92, 81

Conread position: 2-371
Cow position: chr15:3843434-3843064 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 249
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 76, 171

Conread position: 2-389
Cow position: chr15:1253700-1254077 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 59

Conread position: 2-451
Cow position: chr15:7788977-7788527 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 163

Conread position: 2-452
Cow position: chr15:3262018-3261570 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 294
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 61, 84

Conread position: 2-452
Cow position: chr15:21666360-21665902 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 87

Conread position: 2-511
Cow position: chr15:4677882-4678379 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 103

Conread position: 2-533
Cow position: chr15:32692947-32693463 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 344
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 92, 68

Conread position: 2-543
Cow position: chr15:4630522-4629984 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 130

Conread position: 3-260
Cow position: chr15:32286655-32286917 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 192
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 59, 215

Conread position: 4-221
Cow position: chr15:35754435-35754218 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 149
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 57, 45

Conread position: 4-230
Cow position: chr15:6371451-6371233 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 60, 134

Conread position: 4-234
Cow position: chr15:44069181-44069414 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 53, 82

Conread position: 4-252
Cow position: chr15:7933366-7933608 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 171
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 73, 56

Conread position: 4-354
Cow position: chr15:49676416-49676759 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 234
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 66, 137

Conread position: 4-385
Cow position: chr15:13428432-13428816 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 255
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 90, 62

Conread position: 4-452
Cow position: chr15:22920514-22920970 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 212

Conread position: 4-452
Cow position: chr15:44828203-44828659 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 295
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 39, 115

Conread position: 4-479
Cow position: chr15:35734849-35735326 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 64

Conread position: 4-480
Cow position: chr15:4764601-4765077 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 312
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 49, 109

Conread position: 4-501
Cow position: chr15:24294479-24294984 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 85

Conread position: 4-503
Cow position: chr15:6156575-6156059 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 66

Conread position: 4-504
Cow position: chr15:12421775-12421270 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 56

Conread position: 4-508
Cow position: chr15:18333439-18332929 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 83

Conread position: 4-510
Cow position: chr15:7260016-7260527 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 118

Conread position: 4-511
Cow position: chr15:3038132-3037609 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 340
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 55, 134

Conread position: 4-512
Cow position: chr15:8000854-8000328 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 211

Conread position: 4-521
Cow position: chr15:6277867-6277346 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 178

Conread position: 4-521
Cow position: chr15:7894810-7894318 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 79

Conread position: 4-521
Cow position: chr15:21960901-21961421 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 144

Conread position: 4-521
Cow position: chr15:35747684-35748207 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 243

Conread position: 4-521
Cow position: chr15:36648302-36648821 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 207

Conread position: 4-522
Cow position: chr15:1662772-1663283 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 37

Conread position: 4-523
Cow position: chr15:2076045-2076561 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 34

Conread position: 4-523
Cow position: chr15:7836630-7837157 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 87

Conread position: 4-523
Cow position: chr15:15347732-15347206 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 85

Conread position: 4-523
Cow position: chr15:18576112-18576627 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 82

Conread position: 4-523
Cow position: chr15:19738661-19738140 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 78

Conread position: 4-523
Cow position: chr15:31358292-31358799 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 7

Conread position: 4-523
Cow position: chr15:32494997-32494473 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 85

Conread position: 4-523
Cow position: chr15:51215982-51216502 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 171

Conread position: 4-525
Cow position: chr15:324336-324853 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 43

Conread position: 4-525
Cow position: chr15:2006928-2007450 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 48

Conread position: 4-525
Cow position: chr15:15266266-15265744 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 133

Conread position: 4-525
Cow position: chr15:24793445-24793963 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 98

Conread position: 4-525
Cow position: chr15:40104859-40105379 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 79

Conread position: 4-526
Cow position: chr15:37391896-37392410 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 65

Conread position: 4-530
Cow position: chr15:4170303-4169775 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 156

Conread position: 4-530
Cow position: chr15:42321027-42320498 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 191

Conread position: 4-532
Cow position: chr15:7233700-7234227 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 82

Conread position: 4-538
Cow position: chr15:1519755-1519219 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 80

Conread position: 4-538
Cow position: chr15:1771890-1772429 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 56

Conread position: 4-538
Cow position: chr15:2648268-2647725 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 244

Conread position: 4-538
Cow position: chr15:6472522-6471987 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 342

Conread position: 4-538
Cow position: chr15:17080800-17080271 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 146

Conread position: 4-538
Cow position: chr15:20748804-20749346 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 108

Conread position: 4-538
Cow position: chr15:36970312-36970855 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 213

Conread position: 4-543
Cow position: chr15:41365571-41366112 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 91

Conread position: 5-262
Cow position: chr15:685555-685817 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 193
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 65, 182

Conread position: 5-399
Cow position: chr15:32680156-32679764 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 19

Conread position: 5-478
Cow position: chr15:2676910-2676442 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 99

Conread position: 5-501
Cow position: chr15:6554463-6553963 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 80

Conread position: 5-510
Cow position: chr15:7544269-7544783 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 82

Conread position: 5-523
Cow position: chr15:42490594-42491117 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 81

Conread position: 5-525
Cow position: chr15:36627257-36626754 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 19

Conread position: 5-531
Cow position: chr15:4921536-4922071 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 78

Conread position: 5-532
Cow position: chr15:42936103-42936640 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 452

Conread position: 5-538
Cow position: chr15:28490754-28490210 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 60

Conread position: 6-525
Cow position: chr15:36642021-36642531 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 62

Conread position: 6-529
Cow position: chr15:6078125-6078663 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 18

Conread position: 6-532
Cow position: chr15:53338428-53338947 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 212

Conread position: 6-538
Cow position: chr15:4195853-4196394 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 211

Conread position: 6-544
Cow position: chr15:18023386-18022840 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 46

Conread position: 7-237
Cow position: chr15:20080113-20079881 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 165
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 35, 41

Conread position: 7-482
Cow position: chr15:7928023-7928488 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 49

Conread position: 7-523
Cow position: chr15:4384666-4385181 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 79

Conread position: 7-525
Cow position: chr15:11624311-11624824 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 128

Conread position: 9-315
Cow position: chr15:496459-496771 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 213
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 62, 196

Conread position: 9-479
Cow position: chr15:525460-524979 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 316
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 56, 241

Conread position: 13-525
Cow position: chr15:17219470-17218960 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 38

Conread position: 14-351
Cow position: chr15:9428363-9428717 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 229
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 59, 41

Conread position: 14-521
Cow position: chr15:4733260-4733772 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 131

Conread position: 19-219
Cow position: chr15:35681265-35681065 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 42, 153

Conread position: 19-544
Cow position: chr15:20357857-20357352 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 59

Conread position: 22-525
Cow position: chr15:12614473-12614979 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 9

Conread position: 31-527
Cow position: chr15:8407978-8408474 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 141

Conread position: 38-521
Cow position: chr15:690217-690703 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 44

Conread position: 38-522
Cow position: chr15:17787735-17787255 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 157

Conread position: 45-388
Cow position: chr15:16507040-16507389 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 239
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 20, 115

Conread position: 83-538
Cow position: chr15:3010381-3009920 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 131

Conread position: 89-525
Cow position: chr15:23965118-23965550 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 273
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 5, 125

Conread position: 101-525
Cow position: chr15:11299301-11298901 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 38

Conread position: 144-538
Cow position: chr15:1834928-1834530 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 256
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 95, 80

Conread position: 218-525
Cow position: chr15:6621952-6622253 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 53

Conread position: 241-502
Cow position: chr15:35753966-35753705 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 178
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 43, 194

Conread position: 319-544
Cow position: chr15:30810341-30810560 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 172
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 94, 40

Conread position: 362-525
Cow position: chr15:12453170-12453332 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 134
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 51, 13

Show alignments to all cow chromosomes.