Cow genome map
| Conread name: | Pig2-121K23 |
| Conread position: | 2-150 |
| Cow position: | chr21:10762096-10762248 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 2-197 |
| Cow position: | chr21:4083554-4083749 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 73, 125 |
| Conread position: | 2-281 |
| Cow position: | chr21:21517107-21517380 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 76 |
| Conread position: | 2-385 |
| Cow position: | chr21:2769558-2769166 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 259 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 2-423 |
| Cow position: | chr21:2476606-2476193 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 68, 153 |
| Conread position: | 2-445 |
| Cow position: | chr21:4222783-4222337 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 126 |
| Conread position: | 2-452 |
| Cow position: | chr21:20744845-20744402 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 121 |
| Conread position: | 2-532 |
| Cow position: | chr21:4076752-4077279 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 59 |
| Conread position: | 2-538 |
| Cow position: | chr21:46915491-46916037 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 216 |
| Conread position: | 4-329 |
| Cow position: | chr21:3615200-3615532 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 232 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 56, 7 |
| Conread position: | 4-347 |
| Cow position: | chr21:2716772-2716425 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 61, 11 |
| Conread position: | 4-354 |
| Cow position: | chr21:33251298-33251656 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 57, 82 |
| Conread position: | 4-400 |
| Cow position: | chr21:21031646-21032037 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 74, 32 |
| Conread position: | 4-451 |
| Cow position: | chr21:3426394-3426847 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 63 |
| Conread position: | 4-452 |
| Cow position: | chr21:3778674-3779129 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 122 |
| Conread position: | 4-470 |
| Cow position: | chr21:21947895-21947428 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 107 |
| Conread position: | 4-499 |
| Cow position: | chr21:216216-216698 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 26 |
| Conread position: | 4-501 |
| Cow position: | chr21:10849986-10850490 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 85 |
| Conread position: | 4-511 |
| Cow position: | chr21:34292925-34293436 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 158 |
| Conread position: | 4-511 |
| Cow position: | chr21:37044819-37045331 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 213 |
| Conread position: | 4-523 |
| Cow position: | chr21:30561708-30562234 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 82 |
| Conread position: | 4-525 |
| Cow position: | chr21:23860689-23861213 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 354 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 64, 199 |
| Conread position: | 4-525 |
| Cow position: | chr21:36714539-36715063 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 43 |
| Conread position: | 4-530 |
| Cow position: | chr21:13124089-13123563 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 64 |
| Conread position: | 4-532 |
| Cow position: | chr21:1292266-1291746 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 51 |
| Conread position: | 4-532 |
| Cow position: | chr21:31559749-31559216 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 365 |
| Conread position: | 4-533 |
| Cow position: | chr21:25992713-25992177 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 55 |
| Conread position: | 4-538 |
| Cow position: | chr21:4090557-4091098 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 159 |
| Conread position: | 4-538 |
| Cow position: | chr21:11505493-11506045 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 83 |
| Conread position: | 4-538 |
| Cow position: | chr21:12056091-12055552 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 80 |
| Conread position: | 4-538 |
| Cow position: | chr21:26638557-26638016 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 83 |
| Conread position: | 4-538 |
| Cow position: | chr21:39424969-39425512 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 84 |
| Conread position: | 4-539 |
| Cow position: | chr21:2510561-2511101 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 65 |
| Conread position: | 5-522 |
| Cow position: | chr21:4456737-4457258 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 17 |
| Conread position: | 5-523 |
| Cow position: | chr21:2883827-2883317 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 51 |
| Conread position: | 5-523 |
| Cow position: | chr21:30600008-30599494 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 77 |
| Conread position: | 6-523 |
| Cow position: | chr21:145828-146354 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 45 |
| Conread position: | 7-544 |
| Cow position: | chr21:6699646-6699128 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 77 |
| Conread position: | 10-521 |
| Cow position: | chr21:35596281-35596798 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 36 |
| Conread position: | 13-532 |
| Cow position: | chr21:2416154-2416661 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 54 |
| Conread position: | 25-511 |
| Cow position: | chr21:2789064-2788572 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 192 |
| Conread position: | 25-531 |
| Cow position: | chr21:48116035-48116540 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 231 |
| Conread position: | 28-525 |
| Cow position: | chr21:26823297-26822798 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 40 |
| Conread position: | 42-489 |
| Cow position: | chr21:993072-992631 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 47-544 |
| Cow position: | chr21:23601152-23601641 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 12 |
| Conread position: | 88-543 |
| Cow position: | chr21:3194389-3194832 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 72 |
| Conread position: | 100-405 |
| Cow position: | chr21:37147524-37147824 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 82 |
| Conread position: | 144-503 |
| Cow position: | chr21:40271627-40271264 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 85, 325 |
| Conread position: | 144-516 |
| Cow position: | chr21:10762456-10762811 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 80 |
| Conread position: | 148-544 |
| Cow position: | chr21:21926648-21926247 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 78 |
| Conread position: | 180-523 |
| Cow position: | chr21:1191253-1191595 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 20, 62 |
| Conread position: | 194-525 |
| Cow position: | chr21:4086908-4087237 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 30 |
| Conread position: | 377-531 |
| Cow position: | chr21:18693233-18693385 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 51 |
| Conread position: | 386-539 |
| Cow position: | chr21:26094969-26095122 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 25, 70 |
Show alignments to all cow chromosomes.