Cow genome map
| Conread name: | Pig2-121K23 |
| Conread position: | 1-542 |
| Cow position: | chr29:16017395-16016865 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 209 |
| Conread position: | 2-510 |
| Cow position: | chr29:11049026-11049535 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 199 |
| Conread position: | 2-526 |
| Cow position: | chr29:45459461-45459988 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 81 |
| Conread position: | 2-538 |
| Cow position: | chr29:35296620-35297160 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 24 |
| Conread position: | 2-544 |
| Cow position: | chr29:8063159-8062603 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 4-341 |
| Cow position: | chr29:31180867-31181212 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 59, 82 |
| Conread position: | 4-350 |
| Cow position: | chr29:21427311-21426961 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 60, 338 |
| Conread position: | 4-354 |
| Cow position: | chr29:21246312-21246671 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 4-365 |
| Cow position: | chr29:28060922-28060552 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 66, 214 |
| Conread position: | 4-400 |
| Cow position: | chr29:13853276-13852878 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 269 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 62, 21 |
| Conread position: | 4-402 |
| Cow position: | chr29:15969404-15969002 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 66, 89 |
| Conread position: | 4-452 |
| Cow position: | chr29:17662665-17663104 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 233 |
| Conread position: | 4-503 |
| Cow position: | chr29:2689649-2690150 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 138 |
| Conread position: | 4-503 |
| Cow position: | chr29:6266750-6266251 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 82 |
| Conread position: | 4-507 |
| Cow position: | chr29:7431472-7430965 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 82 |
| Conread position: | 4-521 |
| Cow position: | chr29:27041016-27040503 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 64 |
| Conread position: | 4-523 |
| Cow position: | chr29:2099588-2100114 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 146 |
| Conread position: | 4-523 |
| Cow position: | chr29:16022275-16022799 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 249 |
| Conread position: | 4-523 |
| Cow position: | chr29:19623500-19622978 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 86 |
| Conread position: | 4-523 |
| Cow position: | chr29:23975576-23976109 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 339 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 61, 461 |
| Conread position: | 4-523 |
| Cow position: | chr29:25932800-25932275 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 85 |
| Conread position: | 4-523 |
| Cow position: | chr29:26165078-26164553 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 81 |
| Conread position: | 4-525 |
| Cow position: | chr29:19893509-19894044 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 153 |
| Conread position: | 4-526 |
| Cow position: | chr29:16769876-16770397 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 128 |
| Conread position: | 4-531 |
| Cow position: | chr29:39079962-39079436 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 82 |
| Conread position: | 4-532 |
| Cow position: | chr29:32539554-32540087 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 115 |
| Conread position: | 4-532 |
| Cow position: | chr29:40503235-40502705 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 82 |
| Conread position: | 4-532 |
| Cow position: | chr29:43322303-43322836 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 82 |
| Conread position: | 4-538 |
| Cow position: | chr29:610867-610326 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 166 |
| Conread position: | 4-538 |
| Cow position: | chr29:15895104-15894564 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 79 |
| Conread position: | 4-538 |
| Cow position: | chr29:27250591-27250056 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 244 |
| Conread position: | 4-539 |
| Cow position: | chr29:2841621-2841087 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 81 |
| Conread position: | 5-523 |
| Cow position: | chr29:104324-104833 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 37 |
| Conread position: | 5-531 |
| Cow position: | chr29:10824214-10823693 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 87 |
| Conread position: | 5-531 |
| Cow position: | chr29:19652853-19653384 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 84 |
| Conread position: | 6-523 |
| Cow position: | chr29:10648499-10647982 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 77 |
| Conread position: | 7-192 |
| Cow position: | chr29:12796718-12796530 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 7-260 |
| Cow position: | chr29:30108848-30109087 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 34, 54 |
| Conread position: | 7-515 |
| Cow position: | chr29:5957350-5957865 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 451 |
| Conread position: | 7-520 |
| Cow position: | chr29:14013219-14013731 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 150 |
| Conread position: | 7-520 |
| Cow position: | chr29:14073192-14072680 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 150 |
| Conread position: | 8-525 |
| Cow position: | chr29:30811283-30811795 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 52 |
| Conread position: | 9-508 |
| Cow position: | chr29:34800058-34799552 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 74 |
| Conread position: | 13-315 |
| Cow position: | chr29:2368146-2367848 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 143 |
| Conread position: | 17-509 |
| Cow position: | chr29:11855356-11855858 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 72 |
| Conread position: | 19-503 |
| Cow position: | chr29:48717-48230 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 67 |
| Conread position: | 24-462 |
| Cow position: | chr29:4635202-4634771 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 195 |
| Conread position: | 25-411 |
| Cow position: | chr29:24198855-24198461 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 36 |
| Conread position: | 25-523 |
| Cow position: | chr29:20250924-20251428 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 391 |
| Conread position: | 38-263 |
| Cow position: | chr29:34609171-34608948 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 42, 13 |
| Conread position: | 51-372 |
| Cow position: | chr29:11229294-11228974 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 10, 52 |
| Conread position: | 96-499 |
| Cow position: | chr29:11841507-11841904 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 20 |
| Conread position: | 123-329 |
| Cow position: | chr29:13648284-13648486 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 46 |
| Conread position: | 160-538 |
| Cow position: | chr29:18857041-18856658 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 76, 53 |
| Conread position: | 188-525 |
| Cow position: | chr29:803420-803084 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 52, 35 |
| Conread position: | 232-523 |
| Cow position: | chr29:410547-410256 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 46, 219 |
| Conread position: | 332-538 |
| Cow position: | chr29:31181495-31181701 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 86, 24 |
| Conread position: | 338-522 |
| Cow position: | chr29:24709163-24708980 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 75, 38 |
| Conread position: | 410-542 |
| Cow position: | chr29:24198133-24198006 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
Show alignments to all cow chromosomes.