Cow genome map

Conread name: Pig2-121K23

Conread position: 1-216
Cow position: chr5:49020123-49019904 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 70, 0

Conread position: 1-327
Cow position: chr5:23227818-23228147 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 228
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 66, 137

Conread position: 1-523
Cow position: chr5:49518224-49518744 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 82

Conread position: 2-150
Cow position: chr5:6180083-6180234 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 64, 121

Conread position: 2-252
Cow position: chr5:28570257-28570504 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 192

Conread position: 2-329
Cow position: chr5:10844316-10843981 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 214
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 84

Conread position: 2-493
Cow position: chr5:58056176-58055694 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 86

Conread position: 2-525
Cow position: chr5:26079660-26079128 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 215

Conread position: 2-533
Cow position: chr5:30578881-30579419 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 120

Conread position: 2-543
Cow position: chr5:28022726-28023260 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 14

Conread position: 2-543
Cow position: chr5:41359174-41358639 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 205

Conread position: 4-192
Cow position: chr5:23716384-23716196 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 136
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 76, 11

Conread position: 4-234
Cow position: chr5:30088158-30087928 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 171
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 69, 108

Conread position: 4-237
Cow position: chr5:35299624-35299860 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 161
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 66, 215

Conread position: 4-257
Cow position: chr5:27569711-27569975 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 190
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 66, 0

Conread position: 4-354
Cow position: chr5:53714817-53715172 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 227
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 57, 65

Conread position: 4-372
Cow position: chr5:7273426-7273788 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 242
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 90, 56

Conread position: 4-478
Cow position: chr5:31102036-31101570 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 318
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 61, 204

Conread position: 4-479
Cow position: chr5:1342235-1341755 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 87

Conread position: 4-480
Cow position: chr5:3504686-3504206 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 83

Conread position: 4-480
Cow position: chr5:10918358-10918842 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 85

Conread position: 4-480
Cow position: chr5:61020279-61019805 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 64

Conread position: 4-501
Cow position: chr5:54793057-54792570 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 323
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 64, 185

Conread position: 4-502
Cow position: chr5:48809152-48808649 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 65

Conread position: 4-503
Cow position: chr5:24329860-24330341 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 197

Conread position: 4-508
Cow position: chr5:2430571-2430060 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 21

Conread position: 4-511
Cow position: chr5:32733684-32733177 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 130

Conread position: 4-521
Cow position: chr5:29008920-29009439 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 216

Conread position: 4-521
Cow position: chr5:41551364-41550840 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 147

Conread position: 4-521
Cow position: chr5:49181842-49182355 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 64

Conread position: 4-523
Cow position: chr5:4068551-4069074 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 76

Conread position: 4-523
Cow position: chr5:32945441-32945962 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 132

Conread position: 4-523
Cow position: chr5:55627565-55628072 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 57

Conread position: 4-523
Cow position: chr5:57482986-57482460 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 82

Conread position: 4-525
Cow position: chr5:49593898-49593366 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 182

Conread position: 4-529
Cow position: chr5:10776692-10776170 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 345
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 69, 122

Conread position: 4-529
Cow position: chr5:32772042-32772576 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 88

Conread position: 4-529
Cow position: chr5:64782456-64781923 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 82

Conread position: 4-530
Cow position: chr5:46775646-46776175 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 113

Conread position: 4-536
Cow position: chr5:41530008-41529494 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 80

Conread position: 4-538
Cow position: chr5:2530831-2531374 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 83

Conread position: 4-538
Cow position: chr5:3964031-3964555 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 350
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 57, 213

Conread position: 4-538
Cow position: chr5:4019638-4019095 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 83

Conread position: 4-538
Cow position: chr5:31706135-31706677 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 94

Conread position: 4-538
Cow position: chr5:45182541-45182000 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 53

Conread position: 4-538
Cow position: chr5:46663562-46664106 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 83

Conread position: 4-538
Cow position: chr5:48468716-48468176 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 213

Conread position: 4-538
Cow position: chr5:54932657-54932115 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 213

Conread position: 4-538
Cow position: chr5:58195563-58196105 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 83

Conread position: 4-538
Cow position: chr5:59060185-59060721 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 62

Conread position: 4-538
Cow position: chr5:59481815-59482357 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 213

Conread position: 5-222
Cow position: chr5:29123234-29123019 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 58, 80

Conread position: 5-393
Cow position: chr5:18665523-18665919 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 256
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 65, 212

Conread position: 5-480
Cow position: chr5:6158635-6158154 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 84

Conread position: 5-480
Cow position: chr5:61273606-61273143 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 61

Conread position: 5-521
Cow position: chr5:46644271-46644773 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 332
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 89, 68

Conread position: 5-522
Cow position: chr5:56858135-56857636 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 159

Conread position: 5-538
Cow position: chr5:24576474-24577018 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 461

Conread position: 5-542
Cow position: chr5:32674174-32673633 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 64

Conread position: 6-403
Cow position: chr5:25207176-25206773 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 54

Conread position: 7-329
Cow position: chr5:7811983-7811662 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 214
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 78, 55

Conread position: 7-522
Cow position: chr5:46739021-46738500 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 268

Conread position: 8-230
Cow position: chr5:51771780-51771556 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 165
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 53, 103

Conread position: 9-529
Cow position: chr5:45699846-45700361 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 103

Conread position: 13-521
Cow position: chr5:9686844-9686341 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 160

Conread position: 13-525
Cow position: chr5:47073481-47073985 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 55

Conread position: 17-521
Cow position: chr5:14346800-14346294 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 108

Conread position: 25-337
Cow position: chr5:34696165-34696484 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 209
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 43, 229

Conread position: 25-450
Cow position: chr5:2914032-2914466 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 64

Conread position: 25-526
Cow position: chr5:26769392-26769895 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 389

Conread position: 28-237
Cow position: chr5:27488604-27488816 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 38, 192

Conread position: 28-402
Cow position: chr5:57366432-57366058 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 42

Conread position: 28-524
Cow position: chr5:53627172-53626674 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 14

Conread position: 28-525
Cow position: chr5:51162502-51162987 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 19

Conread position: 56-525
Cow position: chr5:51319623-51319162 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 330
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 11, 30

Conread position: 57-525
Cow position: chr5:14659472-14659013 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 5

Conread position: 79-532
Cow position: chr5:58334945-58334500 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 138

Conread position: 201-505
Cow position: chr5:73489795-73489491 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 179
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 212, 9

Conread position: 248-525
Cow position: chr5:27489059-27489336 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 199
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 35, 64

Conread position: 280-525
Cow position: chr5:62848419-62848648 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 169
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 333-529
Cow position: chr5:10843522-10843325 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 136
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 85, 123

Conread position: 402-543
Cow position: chr5:28570566-28570706 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 9, 55

Show alignments to all cow chromosomes.