Cow genome map

Conread name: Pig2-121K23

Conread position: 1-260
Cow position: chr6:42564643-42564903 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 219

Conread position: 1-532
Cow position: chr6:525945-526473 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 35

Conread position: 2-149
Cow position: chr6:59478512-59478365 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 70, 30

Conread position: 2-234
Cow position: chr6:39437344-39437576 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 164
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 59, 81

Conread position: 2-291
Cow position: chr6:62488478-62488182 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 204
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 90, 19

Conread position: 2-507
Cow position: chr6:3278250-3277736 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 84

Conread position: 2-522
Cow position: chr6:19453629-19454143 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 67

Conread position: 2-523
Cow position: chr6:8201433-8201965 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 84

Conread position: 2-523
Cow position: chr6:35877016-35876490 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 83

Conread position: 2-523
Cow position: chr6:55544626-55544099 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 85

Conread position: 2-526
Cow position: chr6:35433247-35433762 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 22

Conread position: 2-538
Cow position: chr6:2554408-2554951 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 85

Conread position: 3-265
Cow position: chr6:20496405-20496664 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 211

Conread position: 3-354
Cow position: chr6:6619714-6619380 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 63

Conread position: 4-146
Cow position: chr6:12095652-12095506 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 4-189
Cow position: chr6:12093154-12092971 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 89, 62

Conread position: 4-194
Cow position: chr6:64714818-64715012 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 61, 85

Conread position: 4-195
Cow position: chr6:65007546-65007733 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 136
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 90, 70

Conread position: 4-211
Cow position: chr6:39907852-39908063 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 144
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 59, 82

Conread position: 4-211
Cow position: chr6:40314605-40314815 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 100

Conread position: 4-224
Cow position: chr6:52804118-52804334 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 167
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 59, 119

Conread position: 4-233
Cow position: chr6:1823544-1823317 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 160
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 57, 82

Conread position: 4-234
Cow position: chr6:13978225-13978455 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 160
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 66, 151

Conread position: 4-234
Cow position: chr6:47043729-47043496 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 159
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 61, 213

Conread position: 4-237
Cow position: chr6:10054317-10054551 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 168
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 65, 85

Conread position: 4-342
Cow position: chr6:2885926-2886256 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 232
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 51, 124

Conread position: 4-447
Cow position: chr6:57870301-57869849 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 82

Conread position: 4-452
Cow position: chr6:701656-702114 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 82

Conread position: 4-452
Cow position: chr6:913334-913801 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 308
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 72, 56

Conread position: 4-452
Cow position: chr6:33388539-33388997 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 65

Conread position: 4-469
Cow position: chr6:42927089-42927557 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 147

Conread position: 4-480
Cow position: chr6:5951534-5951060 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 82

Conread position: 4-502
Cow position: chr6:27530296-27529799 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 80

Conread position: 4-503
Cow position: chr6:36525745-36526255 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 84

Conread position: 4-508
Cow position: chr6:3488698-3488185 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 247

Conread position: 4-508
Cow position: chr6:6566315-6566819 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 216

Conread position: 4-518
Cow position: chr6:41552731-41553234 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 53

Conread position: 4-521
Cow position: chr6:10558939-10558432 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 18

Conread position: 4-521
Cow position: chr6:13943617-13944137 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 79

Conread position: 4-522
Cow position: chr6:35420867-35420378 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 44

Conread position: 4-522
Cow position: chr6:62396871-62397396 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 60

Conread position: 4-523
Cow position: chr6:8761598-8761077 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 82

Conread position: 4-523
Cow position: chr6:15280840-15280324 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 86

Conread position: 4-523
Cow position: chr6:27468961-27469475 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 56

Conread position: 4-523
Cow position: chr6:29311198-29311719 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 43

Conread position: 4-523
Cow position: chr6:30275480-30274951 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 86

Conread position: 4-524
Cow position: chr6:16672089-16672614 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 215

Conread position: 4-525
Cow position: chr6:38231977-38232509 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 205

Conread position: 4-525
Cow position: chr6:59741346-59740827 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 156

Conread position: 4-526
Cow position: chr6:37115840-37116367 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 95

Conread position: 4-529
Cow position: chr6:331763-331233 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 121

Conread position: 4-529
Cow position: chr6:13103761-13104294 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 101

Conread position: 4-529
Cow position: chr6:43617419-43617951 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 82

Conread position: 4-529
Cow position: chr6:59919576-59919049 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 213

Conread position: 4-531
Cow position: chr6:34893307-34892771 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 85

Conread position: 4-531
Cow position: chr6:65927642-65928175 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 79

Conread position: 4-532
Cow position: chr6:17045767-17046295 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 105

Conread position: 4-538
Cow position: chr6:1405534-1404993 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 245

Conread position: 4-538
Cow position: chr6:2374409-2374945 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 91

Conread position: 4-538
Cow position: chr6:7141769-7141242 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 352
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 59, 213

Conread position: 4-538
Cow position: chr6:17598574-17598034 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 80

Conread position: 4-538
Cow position: chr6:28063044-28063581 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 78

Conread position: 4-538
Cow position: chr6:28491811-28491269 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 82

Conread position: 4-538
Cow position: chr6:44028753-44029284 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 80

Conread position: 4-538
Cow position: chr6:58409207-58408667 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 90

Conread position: 4-538
Cow position: chr6:68026485-68027037 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 82

Conread position: 5-508
Cow position: chr6:15141471-15140966 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 83

Conread position: 6-538
Cow position: chr6:65822422-65821881 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 110

Conread position: 7-525
Cow position: chr6:37642105-37642612 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 177

Conread position: 8-367
Cow position: chr6:68362608-68362249 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 240
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 86, 22

Conread position: 8-525
Cow position: chr6:6476748-6476258 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 343
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 58, 129

Conread position: 9-206
Cow position: chr6:63198432-63198235 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 163
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 59

Conread position: 9-459
Cow position: chr6:13317776-13317324 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 228

Conread position: 9-532
Cow position: chr6:30478805-30479340 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 60

Conread position: 10-351
Cow position: chr6:11353444-11353798 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 213

Conread position: 19-351
Cow position: chr6:10640848-10641183 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 223
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 47, 86

Conread position: 22-429
Cow position: chr6:39161928-39162321 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 53

Conread position: 25-403
Cow position: chr6:49520667-49520271 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 269
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 191, 26

Conread position: 27-350
Cow position: chr6:50497733-50497402 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 222
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 38, 59

Conread position: 28-521
Cow position: chr6:1384117-1383651 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 335
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 29, 63

Conread position: 29-529
Cow position: chr6:15476014-15476519 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 33-237
Cow position: chr6:42359950-42359742 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 35, 191

Conread position: 38-477
Cow position: chr6:28474448-28474885 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 23

Conread position: 39-521
Cow position: chr6:1100846-1100360 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 91

Conread position: 40-543
Cow position: chr6:10630205-10630696 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 161

Conread position: 42-515
Cow position: chr6:13276543-13277021 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 178

Conread position: 49-501
Cow position: chr6:34024583-34025011 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 20

Conread position: 53-530
Cow position: chr6:16051641-16052117 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 31

Conread position: 57-475
Cow position: chr6:48368152-48368556 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 283
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 23, 7

Conread position: 92-526
Cow position: chr6:11402847-11403276 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 287
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 275, 74

Conread position: 105-538
Cow position: chr6:1412131-1411695 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 256
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 101, 140

Conread position: 143-544
Cow position: chr6:6542811-6543204 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 9

Conread position: 148-502
Cow position: chr6:25214110-25214466 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 234
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 36, 12

Conread position: 163-510
Cow position: chr6:51190378-51190715 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 241
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 115, 63

Conread position: 169-543
Cow position: chr6:12095507-12095151 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 27

Conread position: 206-538
Cow position: chr6:39908442-39908772 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 222
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 72, 36

Conread position: 217-485
Cow position: chr6:31568881-31568614 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 205
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 21, 65

Conread position: 220-538
Cow position: chr6:3148926-3149249 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 217
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 16, 240

Conread position: 232-525
Cow position: chr6:47043267-47042969 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 202
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 64, 224

Conread position: 294-538
Cow position: chr6:40251663-40251908 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 165
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 124, 162

Show alignments to all cow chromosomes.