Cow genome map
| Conread name: | Pig2-121K23 |
| Conread position: | 2-417 |
| Cow position: | chr9:3867874-3867462 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 106 |
| Conread position: | 2-509 |
| Cow position: | chr9:10315011-10315511 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 36 |
| Conread position: | 2-521 |
| Cow position: | chr9:28626400-28625884 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 94 |
| Conread position: | 2-525 |
| Cow position: | chr9:35657596-35658105 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 59 |
| Conread position: | 4-189 |
| Cow position: | chr9:18836415-18836599 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 76, 94 |
| Conread position: | 4-211 |
| Cow position: | chr9:32968374-32968584 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 81 |
| Conread position: | 4-254 |
| Cow position: | chr9:51183076-51182817 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 62 |
| Conread position: | 4-263 |
| Cow position: | chr9:13219953-13220222 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 59, 216 |
| Conread position: | 4-315 |
| Cow position: | chr9:20310099-20309788 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 219 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 66, 215 |
| Conread position: | 4-318 |
| Cow position: | chr9:8969291-8968969 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 73, 54 |
| Conread position: | 4-354 |
| Cow position: | chr9:831800-831444 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 4-422 |
| Cow position: | chr9:46626167-46625741 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 82 |
| Conread position: | 4-443 |
| Cow position: | chr9:28021179-28021630 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 9 |
| Conread position: | 4-465 |
| Cow position: | chr9:2052082-2052548 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 203 |
| Conread position: | 4-501 |
| Cow position: | chr9:27034340-27034836 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 81 |
| Conread position: | 4-501 |
| Cow position: | chr9:60278390-60277886 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 82 |
| Conread position: | 4-508 |
| Cow position: | chr9:3567221-3566709 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 454 |
| Conread position: | 4-508 |
| Cow position: | chr9:4532123-4532634 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 88 |
| Conread position: | 4-508 |
| Cow position: | chr9:31807172-31807676 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 56 |
| Conread position: | 4-508 |
| Cow position: | chr9:47001838-47002332 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 74 |
| Conread position: | 4-511 |
| Cow position: | chr9:16267992-16268518 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 83 |
| Conread position: | 4-521 |
| Cow position: | chr9:3155664-3156180 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 213 |
| Conread position: | 4-521 |
| Cow position: | chr9:34242966-34242440 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 213 |
| Conread position: | 4-521 |
| Cow position: | chr9:36724133-36724659 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 371 |
| Conread position: | 4-522 |
| Cow position: | chr9:2500663-2500137 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 81 |
| Conread position: | 4-522 |
| Cow position: | chr9:12845906-12845394 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 155 |
| Conread position: | 4-523 |
| Cow position: | chr9:29629115-29628590 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 82 |
| Conread position: | 4-523 |
| Cow position: | chr9:30672002-30672525 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 85 |
| Conread position: | 4-523 |
| Cow position: | chr9:42568505-42569028 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 79 |
| Conread position: | 4-525 |
| Cow position: | chr9:3024741-3025264 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 43 |
| Conread position: | 4-525 |
| Cow position: | chr9:3938159-3937665 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 132 |
| Conread position: | 4-525 |
| Cow position: | chr9:64118461-64118978 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 124 |
| Conread position: | 4-526 |
| Cow position: | chr9:31194535-31194004 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 119 |
| Conread position: | 4-531 |
| Cow position: | chr9:2170690-2171221 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 7 |
| Conread position: | 4-531 |
| Cow position: | chr9:59174525-59173996 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 124 |
| Conread position: | 4-532 |
| Cow position: | chr9:15072148-15072681 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 213 |
| Conread position: | 4-532 |
| Cow position: | chr9:37971575-37971044 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 257 |
| Conread position: | 4-538 |
| Cow position: | chr9:163858-163329 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 108 |
| Conread position: | 4-538 |
| Cow position: | chr9:781170-780630 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 108 |
| Conread position: | 4-538 |
| Cow position: | chr9:1076567-1076023 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 213 |
| Conread position: | 4-538 |
| Cow position: | chr9:25755571-25755049 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 351 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 57, 80 |
| Conread position: | 4-538 |
| Cow position: | chr9:27933726-27934263 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 82 |
| Conread position: | 5-230 |
| Cow position: | chr9:54360240-54360462 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 89, 63 |
| Conread position: | 5-336 |
| Cow position: | chr9:7002187-7002524 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 60, 129 |
| Conread position: | 5-429 |
| Cow position: | chr9:2202844-2203271 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 75, 134 |
| Conread position: | 5-452 |
| Cow position: | chr9:37163175-37162718 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 5-503 |
| Cow position: | chr9:42309316-42309821 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 109 |
| Conread position: | 5-508 |
| Cow position: | chr9:10321455-10321951 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 195 |
| Conread position: | 5-521 |
| Cow position: | chr9:31020441-31020979 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 159 |
| Conread position: | 5-536 |
| Cow position: | chr9:9012742-9013278 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 82 |
| Conread position: | 6-453 |
| Cow position: | chr9:222912-222458 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 293 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 72, 54 |
| Conread position: | 7-462 |
| Cow position: | chr9:16106204-16106651 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 86, 21 |
| Conread position: | 7-539 |
| Cow position: | chr9:29327958-29328457 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 40 |
| Conread position: | 7-544 |
| Cow position: | chr9:3725914-3726460 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 221 |
| Conread position: | 8-523 |
| Cow position: | chr9:59455963-59455441 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 195 |
| Conread position: | 9-370 |
| Cow position: | chr9:23409851-23410210 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 53 |
| Conread position: | 10-360 |
| Cow position: | chr9:15984125-15984476 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 47, 194 |
| Conread position: | 12-543 |
| Cow position: | chr9:64158763-64159296 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 191 |
| Conread position: | 13-538 |
| Cow position: | chr9:6757214-6757738 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 29-274 |
| Cow position: | chr9:11519146-11518909 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 46, 172 |
| Conread position: | 30-494 |
| Cow position: | chr9:39992575-39993046 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 428 |
| Conread position: | 39-505 |
| Cow position: | chr9:6111307-6110856 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 179 |
| Conread position: | 54-523 |
| Cow position: | chr9:7062409-7061935 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 66-510 |
| Cow position: | chr9:37064100-37063658 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 150 |
| Conread position: | 77-525 |
| Cow position: | chr9:2800819-2800396 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 31 |
| Conread position: | 111-538 |
| Cow position: | chr9:50789420-50789851 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 287 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 90, 133 |
| Conread position: | 114-525 |
| Cow position: | chr9:37094922-37095355 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 364 |
| Conread position: | 122-543 |
| Cow position: | chr9:3006492-3006066 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 278 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 107, 331 |
| Conread position: | 209-544 |
| Cow position: | chr9:7012175-7012495 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 220-539 |
| Cow position: | chr9:59510648-59510965 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 17 |
| Conread position: | 222-544 |
| Cow position: | chr9:3394128-3393813 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 192 |
| Conread position: | 340-538 |
| Cow position: | chr9:31064408-31064607 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 116 |
| Conread position: | 374-525 |
| Cow position: | chr9:1635551-1635701 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 82 |
Show alignments to all cow chromosomes.