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Cow genome map

           
Conread name:
           
Pig2-127N17
        

               
Conread position:
               
131-373
               

               
Cow position:
               
chr29:22613704-22613477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 70
               

               
Conread position:
               
173-379
               

               
Cow position:
               
chr29:3583870-3584075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
174-338
               

               
Cow position:
               
chr29:6716271-6716432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
153, 23
               

               
Conread position:
               
174-371
               

               
Cow position:
               
chr29:22735204-22735399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
176-370
               

               
Cow position:
               
chr29:7414735-7414552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
46, 14
               

               
Conread position:
               
176-373
               

               
Cow position:
               
chr29:34744393-34744578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
149, 20
               

               
Conread position:
               
186-381
               

               
Cow position:
               
chr29:396635-396445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
36, 7
               

               
Conread position:
               
188-371
               

               
Cow position:
               
chr29:25981773-25981954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
164, 13
               

               
Conread position:
               
190-373
               

               
Cow position:
               
chr29:11894931-11894745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
192-327
               

               
Cow position:
               
chr29:44937766-44937905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
196-350
               

               
Cow position:
               
chr29:16164208-16164366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 41
               

               
Conread position:
               
196-380
               

               
Cow position:
               
chr29:30294645-30294833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
196-385
               

               
Cow position:
               
chr29:16652381-16652190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
196-410
               

               
Cow position:
               
chr29:11227156-11227374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
197-417
               

               
Cow position:
               
chr29:12680382-12680156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
27, 5
               

               
Conread position:
               
199-403
               

               
Cow position:
               
chr29:39038046-39038253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
16, 111
               

               
Conread position:
               
200-373
               

               
Cow position:
               
chr29:13028667-13028487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
100, 7
               

               
Conread position:
               
201-381
               

               
Cow position:
               
chr29:4440987-4441165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
126, 107
               

               
Conread position:
               
202-370
               

               
Cow position:
               
chr29:12025258-12025425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
37, 27
               

               
Conread position:
               
202-372
               

               
Cow position:
               
chr29:26275817-26275654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
128, 7
               

               
Conread position:
               
202-380
               

               
Cow position:
               
chr29:25432666-25432493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
73, 19
               

               
Conread position:
               
203-381
               

               
Cow position:
               
chr29:35292303-35292132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 95
               

               
Conread position:
               
203-385
               

               
Cow position:
               
chr29:19910181-19909990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
204-350
               

               
Cow position:
               
chr29:22705261-22705105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
204-373
               

               
Cow position:
               
chr29:8163611-8163782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
204-373
               

               
Cow position:
               
chr29:16735442-16735271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
204-373
               

               
Cow position:
               
chr29:38754723-38754890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
123, 102
               

               
Conread position:
               
204-377
               

               
Cow position:
               
chr29:936418-936250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
132, 93
               

               
Conread position:
               
204-380
               

               
Cow position:
               
chr29:8798795-8798975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 33
               

               
Conread position:
               
204-381
               

               
Cow position:
               
chr29:5046871-5046692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
17, 50
               

               
Conread position:
               
204-381
               

               
Cow position:
               
chr29:17436965-17436790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 65
               

               
Conread position:
               
204-381
               

               
Cow position:
               
chr29:22018971-22019148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 112
               

               
Conread position:
               
204-381
               

               
Cow position:
               
chr29:33511512-33511690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
204-385
               

               
Cow position:
               
chr29:25268353-25268170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
204-385
               

               
Cow position:
               
chr29:31489539-31489353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
204-387
               

               
Cow position:
               
chr29:23874677-23874492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
204-402
               

               
Cow position:
               
chr29:25288703-25288906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 160
               

               
Conread position:
               
204-409
               

               
Cow position:
               
chr29:36781095-36781296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
126, 84
               

               
Conread position:
               
205-373
               

               
Cow position:
               
chr29:20770561-20770391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 76
               

               
Conread position:
               
205-381
               

               
Cow position:
               
chr29:15947383-15947206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
205-409
               

               
Cow position:
               
chr29:41112678-41112872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
125, 15
               

               
Conread position:
               
206-345
               

               
Cow position:
               
chr29:31835480-31835347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
123, 19
               

               
Conread position:
               
207-373
               

               
Cow position:
               
chr29:4491840-4492004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
19, 47
               

               
Conread position:
               
208-325
               

               
Cow position:
               
chr29:7438851-7438964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
208-349
               

               
Cow position:
               
chr29:35485788-35485652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
112, 89
               

               
Conread position:
               
208-371
               

               
Cow position:
               
chr29:23637463-23637629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
208-371
               

               
Cow position:
               
chr29:24119287-24119451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
208-372
               

               
Cow position:
               
chr29:42887182-42887017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
208-373
               

               
Cow position:
               
chr29:684967-685126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
208-373
               

               
Cow position:
               
chr29:16438560-16438732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
16, 115
               

               
Conread position:
               
208-373
               

               
Cow position:
               
chr29:20243595-20243755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
119, 17
               

               
Conread position:
               
208-373
               

               
Cow position:
               
chr29:22720436-22720595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
115, 90
               

               
Conread position:
               
208-373
               

               
Cow position:
               
chr29:22729781-22729614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 104
               

               
Conread position:
               
208-373
               

               
Cow position:
               
chr29:24605107-24604943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
118, 90
               

               
Conread position:
               
208-373
               

               
Cow position:
               
chr29:25092315-25092153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
122, 80
               

               
Conread position:
               
208-373
               

               
Cow position:
               
chr29:35458558-35458725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
208-381
               

               
Cow position:
               
chr29:2414544-2414713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
208-381
               

               
Cow position:
               
chr29:8669562-8669398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
208-390
               

               
Cow position:
               
chr29:17462566-17462751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
12, 95
               

               
Conread position:
               
208-423
               

               
Cow position:
               
chr29:20685382-20685166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
112, 202
               

               
Conread position:
               
209-363
               

               
Cow position:
               
chr29:4741178-4741334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
209-368
               

               
Cow position:
               
chr29:25104803-25104645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
111, 23
               

               
Conread position:
               
209-371
               

               
Cow position:
               
chr29:1008030-1007870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
28, 98
               

               
Conread position:
               
209-372
               

               
Cow position:
               
chr29:12890886-12890730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
121, 39
               

               
Conread position:
               
209-372
               

               
Cow position:
               
chr29:28734837-28735000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
97, 86
               

               
Conread position:
               
209-373
               

               
Cow position:
               
chr29:4070831-4070671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 80
               

               
Conread position:
               
209-373
               

               
Cow position:
               
chr29:22534173-22534008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
209-373
               

               
Cow position:
               
chr29:36546572-36546735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
121, 96
               

               
Conread position:
               
209-373
               

               
Cow position:
               
chr29:38347817-38347980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
119, 132
               

               
Conread position:
               
209-373
               

               
Cow position:
               
chr29:38396574-38396407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 47
               

               
Conread position:
               
209-380
               

               
Cow position:
               
chr29:14577067-14576899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
120, 99
               

               
Conread position:
               
209-381
               

               
Cow position:
               
chr29:4121066-4120893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
209-381
               

               
Cow position:
               
chr29:21196442-21196610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
118, 70
               

               
Conread position:
               
209-381
               

               
Cow position:
               
chr29:23678912-23678748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
15, 76
               

               
Conread position:
               
209-381
               

               
Cow position:
               
chr29:24660887-24660724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
122, 79
               

               
Conread position:
               
209-381
               

               
Cow position:
               
chr29:33321559-33321386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
209-381
               

               
Cow position:
               
chr29:38732368-38732192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
209-382
               

               
Cow position:
               
chr29:22068531-22068702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
209-386
               

               
Cow position:
               
chr29:28813762-28813941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
209-387
               

               
Cow position:
               
chr29:28715021-28715201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
209-402
               

               
Cow position:
               
chr29:24614557-24614362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
92, 28
               

               
Conread position:
               
209-402
               

               
Cow position:
               
chr29:34356181-34355984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
209-403
               

               
Cow position:
               
chr29:28420968-28420772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
209-403
               

               
Cow position:
               
chr29:32215913-32215725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
110, 16
               

               
Conread position:
               
209-403
               

               
Cow position:
               
chr29:44901451-44901645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
155, 93
               

               
Conread position:
               
209-407
               

               
Cow position:
               
chr29:26563611-26563811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
96, 42
               

               
Conread position:
               
209-410
               

               
Cow position:
               
chr29:24065894-24065695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
115, 17
               

               
Conread position:
               
210-368
               

               
Cow position:
               
chr29:1615136-1614981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
120, 87
               

               
Conread position:
               
210-373
               

               
Cow position:
               
chr29:5953647-5953812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
210-381
               

               
Cow position:
               
chr29:26017291-26017463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
210-385
               

               
Cow position:
               
chr29:8292704-8292884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
210-385
               

               
Cow position:
               
chr29:9800868-9800684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 160
               

               
Conread position:
               
210-385
               

               
Cow position:
               
chr29:20626779-20626601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
210-385
               

               
Cow position:
               
chr29:20781230-20781052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
210-385
               

               
Cow position:
               
chr29:30123293-30123470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
210-385
               

               
Cow position:
               
chr29:37771676-37771852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
103, 78
               

               
Conread position:
               
211-333
               

               
Cow position:
               
chr29:41844042-41844165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
211-343
               

               
Cow position:
               
chr29:6337859-6337727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
14, 22
               

               
Conread position:
               
211-373
               

               
Cow position:
               
chr29:22776282-22776126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
119, 15
               

               
Conread position:
               
211-377
               

               
Cow position:
               
chr29:16290931-16290769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
116, 64
               

               
Conread position:
               
211-385
               

               
Cow position:
               
chr29:23262111-23262287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
211-408
               

               
Cow position:
               
chr29:28066688-28066498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
120, 40
               

               
Conread position:
               
212-330
               

               
Cow position:
               
chr29:27640263-27640382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
212-368
               

               
Cow position:
               
chr29:35281679-35281516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
212-384
               

               
Cow position:
               
chr29:11685376-11685203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
212-385
               

               
Cow position:
               
chr29:26602407-26602233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
117, 103
               

               
Conread position:
               
212-403
               

               
Cow position:
               
chr29:40994672-40994874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
212-404
               

               
Cow position:
               
chr29:9078323-9078514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
110, 54
               

               
Conread position:
               
213-349
               

               
Cow position:
               
chr29:26777216-26777079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
213-366
               

               
Cow position:
               
chr29:14746984-14746834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
114, 84
               

               
Conread position:
               
213-373
               

               
Cow position:
               
chr29:11081186-11081349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
213-373
               

               
Cow position:
               
chr29:16609956-16609795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
213-373
               

               
Cow position:
               
chr29:42630323-42630168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
213-379
               

               
Cow position:
               
chr29:20256426-20256259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
213-381
               

               
Cow position:
               
chr29:2219594-2219426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
16, 94
               

               
Conread position:
               
213-381
               

               
Cow position:
               
chr29:5520278-5520446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
114, 84
               

               
Conread position:
               
213-381
               

               
Cow position:
               
chr29:5830811-5830981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
213-381
               

               
Cow position:
               
chr29:14828023-14828189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
213-381
               

               
Cow position:
               
chr29:21018538-21018707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
213-381
               

               
Cow position:
               
chr29:26211259-26211091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
213-381
               

               
Cow position:
               
chr29:32894463-32894302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
116, 72
               

               
Conread position:
               
213-387
               

               
Cow position:
               
chr29:41014774-41014597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
213-396
               

               
Cow position:
               
chr29:32656642-32656456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
213-403
               

               
Cow position:
               
chr29:4624792-4624980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
115, 19
               

               
Conread position:
               
213-403
               

               
Cow position:
               
chr29:23845046-23844854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
213-403
               

               
Cow position:
               
chr29:30827614-30827422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
213-403
               

               
Cow position:
               
chr29:41531057-41530866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
214-366
               

               
Cow position:
               
chr29:3711581-3711428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
214-368
               

               
Cow position:
               
chr29:7285657-7285506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
114, 18
               

               
Conread position:
               
214-370
               

               
Cow position:
               
chr29:6636283-6636130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
53, 37
               

               
Conread position:
               
214-372
               

               
Cow position:
               
chr29:37618514-37618354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
214-373
               

               
Cow position:
               
chr29:16200271-16200431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
214-373
               

               
Cow position:
               
chr29:25737215-25737367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
117, 18
               

               
Conread position:
               
214-373
               

               
Cow position:
               
chr29:41094322-41094164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
214-377
               

               
Cow position:
               
chr29:22576973-22577136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
113, 97
               

               
Conread position:
               
214-381
               

               
Cow position:
               
chr29:29264873-29265043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
214-381
               

               
Cow position:
               
chr29:35189814-35189646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
214-403
               

               
Cow position:
               
chr29:2744064-2744251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
169, 96
               

               
Conread position:
               
214-403
               

               
Cow position:
               
chr29:15798157-15797968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
8, 35
               

               
Conread position:
               
214-403
               

               
Cow position:
               
chr29:16272949-16272758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
214-407
               

               
Cow position:
               
chr29:25814629-25814824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
215-373
               

               
Cow position:
               
chr29:36531070-36530914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
113, 92
               

               
Conread position:
               
215-380
               

               
Cow position:
               
chr29:32799499-32799672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
215-381
               

               
Cow position:
               
chr29:7040664-7040833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
86, 144
               

               
Conread position:
               
215-381
               

               
Cow position:
               
chr29:33143151-33143315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
8, 83
               

               
Conread position:
               
216-369
               

               
Cow position:
               
chr29:29183926-29183773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
104, 134
               

               
Conread position:
               
216-370
               

               
Cow position:
               
chr29:17085478-17085632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
216-373
               

               
Cow position:
               
chr29:25944091-25944250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
216-373
               

               
Cow position:
               
chr29:26631252-26631088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
216-373
               

               
Cow position:
               
chr29:30227077-30227234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
111, 136
               

               
Conread position:
               
216-373
               

               
Cow position:
               
chr29:40117768-40117619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
114, 72
               

               
Conread position:
               
216-385
               

               
Cow position:
               
chr29:11612050-11611879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
216-402
               

               
Cow position:
               
chr29:19363913-19363728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
10, 93
               

               
Conread position:
               
216-403
               

               
Cow position:
               
chr29:38581195-38580996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
216-418
               

               
Cow position:
               
chr29:36210352-36210142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
46, 10
               

               
Conread position:
               
217-354
               

               
Cow position:
               
chr29:6515635-6515497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
217-371
               

               
Cow position:
               
chr29:21645519-21645361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
70, 142
               

               
Conread position:
               
217-373
               

               
Cow position:
               
chr29:35677339-35677496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
217-403
               

               
Cow position:
               
chr29:35084021-35084206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
112, 45
               

               
Conread position:
               
218-314
               

               
Cow position:
               
chr29:9924372-9924468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
218-371
               

               
Cow position:
               
chr29:31929187-31929036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
112, 64
               

               
Conread position:
               
218-373
               

               
Cow position:
               
chr29:629737-629585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
70, 8
               

               
Conread position:
               
218-373
               

               
Cow position:
               
chr29:4484298-4484143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
109, 79
               

               
Conread position:
               
218-373
               

               
Cow position:
               
chr29:17222617-17222460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
94, 53
               

               
Conread position:
               
218-373
               

               
Cow position:
               
chr29:24293071-24292915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
91, 52
               

               
Conread position:
               
218-373
               

               
Cow position:
               
chr29:34745460-34745611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 39
               

               
Conread position:
               
218-381
               

               
Cow position:
               
chr29:19187227-19187065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
112, 75
               

               
Conread position:
               
218-381
               

               
Cow position:
               
chr29:24187862-24188026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
218-381
               

               
Cow position:
               
chr29:38858012-38858174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
84, 8
               

               
Conread position:
               
218-403
               

               
Cow position:
               
chr29:18878279-18878465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
15, 35
               

               
Conread position:
               
219-402
               

               
Cow position:
               
chr29:31786874-31786692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
103, 47
               

               
Conread position:
               
219-403
               

               
Cow position:
               
chr29:4648012-4648193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
108, 37
               

               
Conread position:
               
220-348
               

               
Cow position:
               
chr29:659480-659354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
110, 87
               

               
Conread position:
               
220-370
               

               
Cow position:
               
chr29:34274175-34274329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
220-371
               

               
Cow position:
               
chr29:19762462-19762317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
110, 34
               

               
Conread position:
               
220-371
               

               
Cow position:
               
chr29:32655895-32656041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
108, 67
               

               
Conread position:
               
220-372
               

               
Cow position:
               
chr29:17282260-17282116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
111, 33
               

               
Conread position:
               
220-372
               

               
Cow position:
               
chr29:26540341-26540492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 35
               

               
Conread position:
               
220-378
               

               
Cow position:
               
chr29:40112578-40112424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
110, 68
               

               
Conread position:
               
220-381
               

               
Cow position:
               
chr29:17297337-17297175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
220-381
               

               
Cow position:
               
chr29:18449939-18450099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
107, 91
               

               
Conread position:
               
220-381
               

               
Cow position:
               
chr29:19420421-19420574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
109, 31
               

               
Conread position:
               
220-381
               

               
Cow position:
               
chr29:29057378-29057214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
220-381
               

               
Cow position:
               
chr29:43088505-43088347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
110, 85
               

               
Conread position:
               
220-403
               

               
Cow position:
               
chr29:2056259-2056077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
220-403
               

               
Cow position:
               
chr29:43099549-43099729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
7, 65
               

               
Conread position:
               
220-407
               

               
Cow position:
               
chr29:20167622-20167436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
91, 36
               

               
Conread position:
               
221-365
               

               
Cow position:
               
chr29:10839137-10838996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
109, 72
               

               
Conread position:
               
221-369
               

               
Cow position:
               
chr29:9378833-9378688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
108, 76
               

               
Conread position:
               
221-373
               

               
Cow position:
               
chr29:17110151-17110004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
109, 29
               

               
Conread position:
               
221-373
               

               
Cow position:
               
chr29:19125528-19125369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
221-373
               

               
Cow position:
               
chr29:22028763-22028908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
115, 77
               

               
Conread position:
               
221-373
               

               
Cow position:
               
chr29:36357326-36357173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
67, 86
               

               
Conread position:
               
221-377
               

               
Cow position:
               
chr29:8841251-8841403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
106, 76
               

               
Conread position:
               
221-403
               

               
Cow position:
               
chr29:5408944-5409125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
157, 86
               

               
Conread position:
               
221-403
               

               
Cow position:
               
chr29:9709891-9709711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
109, 67
               

               
Conread position:
               
221-403
               

               
Cow position:
               
chr29:19949503-19949326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
109, 76
               

               
Conread position:
               
221-403
               

               
Cow position:
               
chr29:28949183-28948990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
221-403
               

               
Cow position:
               
chr29:29769156-29769335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
109, 86
               

               
Conread position:
               
222-360
               

               
Cow position:
               
chr29:11887458-11887328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
222-373
               

               
Cow position:
               
chr29:23734889-23735041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
222-381
               

               
Cow position:
               
chr29:16561577-16561731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 67
               

               
Conread position:
               
223-373
               

               
Cow position:
               
chr29:7955792-7955943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
94, 130
               

               
Conread position:
               
223-381
               

               
Cow position:
               
chr29:23142136-23142295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
223-381
               

               
Cow position:
               
chr29:42405145-42404986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
223-398
               

               
Cow position:
               
chr29:40763500-40763672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
108, 85
               

               
Conread position:
               
224-407
               

               
Cow position:
               
chr29:3293138-3292960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
159, 79
               

               
Conread position:
               
225-373
               

               
Cow position:
               
chr29:5893040-5892892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
77, 26
               

               
Conread position:
               
225-381
               

               
Cow position:
               
chr29:26539425-26539274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
102, 68
               

               
Conread position:
               
225-382
               

               
Cow position:
               
chr29:41422715-41422873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
225-403
               

               
Cow position:
               
chr29:15796678-15796502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
74, 23
               

               
Conread position:
               
225-403
               

               
Cow position:
               
chr29:29324227-29324404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
67, 8
               

               
Conread position:
               
226-381
               

               
Cow position:
               
chr29:30441132-30440976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
90, 116
               

               
Conread position:
               
227-373
               

               
Cow position:
               
chr29:7125014-7124865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
228-373
               

               
Cow position:
               
chr29:935117-934968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
54, 99
               

               
Conread position:
               
229-381
               

               
Cow position:
               
chr29:17663568-17663722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 37
               

               
Conread position:
               
229-381
               

               
Cow position:
               
chr29:21443151-21443299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
98, 22
               

               
Conread position:
               
230-373
               

               
Cow position:
               
chr29:27042460-27042319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
57, 21
               

               
Conread position:
               
233-373
               

               
Cow position:
               
chr29:7143485-7143342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
235-368
               

               
Cow position:
               
chr29:23991645-23991779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
235-381
               

               
Cow position:
               
chr29:24365713-24365858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
92, 124
               

               
Conread position:
               
238-403
               

               
Cow position:
               
chr29:23825031-23825194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
92, 59
               

               
Conread position:
               
239-387
               

               
Cow position:
               
chr29:38582150-38582000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
241-380
               

               
Cow position:
               
chr29:28257320-28257181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
85, 69
               
Show alignments to all cow chromosomes.