Cow genome map
| Conread name: | Pig2-130F05 |
| Conread position: | 2-367 |
| Cow position: | chr12:35367860-35367468 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 263 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 7-261 |
| Cow position: | chr12:19495931-19496192 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 104, 142 |
| Conread position: | 13-300 |
| Cow position: | chr12:2229014-2228707 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 23, 173 |
| Conread position: | 13-368 |
| Cow position: | chr12:61764-62146 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 173 |
| Conread position: | 13-368 |
| Cow position: | chr12:1007459-1007077 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 13-368 |
| Cow position: | chr12:27958082-27958464 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 270 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 23, 173 |
| Conread position: | 13-368 |
| Cow position: | chr12:36287572-36287951 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 13-386 |
| Cow position: | chr12:14423790-14423393 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 25-295 |
| Cow position: | chr12:21432768-21432482 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 52, 14 |
| Conread position: | 25-308 |
| Cow position: | chr12:36445814-36445517 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 55, 15 |
| Conread position: | 25-316 |
| Cow position: | chr12:10076086-10075783 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 25-316 |
| Cow position: | chr12:21452549-21452856 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 25-316 |
| Cow position: | chr12:36213706-36213400 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 25-368 |
| Cow position: | chr12:259158-258791 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 25-368 |
| Cow position: | chr12:1511336-1511702 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 259 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 25-368 |
| Cow position: | chr12:5107486-5107119 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 261 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 25-368 |
| Cow position: | chr12:16301910-16302277 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 25-368 |
| Cow position: | chr12:25148190-25148556 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 25-368 |
| Cow position: | chr12:31829021-31829388 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 25-368 |
| Cow position: | chr12:32339828-32340195 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 25-368 |
| Cow position: | chr12:32758125-32757758 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 263 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 25-368 |
| Cow position: | chr12:33925269-33925636 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 25-369 |
| Cow position: | chr12:32147201-32147567 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 256 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 25-371 |
| Cow position: | chr12:31027392-31027762 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 259 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 25-386 |
| Cow position: | chr12:1056080-1056464 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 270 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 25-386 |
| Cow position: | chr12:3716845-3717230 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 56, 24 |
| Conread position: | 25-386 |
| Cow position: | chr12:5110636-5111017 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 269 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 55, 25 |
| Conread position: | 25-386 |
| Cow position: | chr12:8839682-8839296 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 25-386 |
| Cow position: | chr12:10359125-10358739 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 12 |
| Conread position: | 25-386 |
| Cow position: | chr12:15925325-15925708 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 270 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 25-386 |
| Cow position: | chr12:25265905-25266289 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 270 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 25-386 |
| Cow position: | chr12:32011349-32011735 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 262 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 55, 15 |
| Conread position: | 25-386 |
| Cow position: | chr12:38893792-38893407 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 25 |
| Conread position: | 25-469 |
| Cow position: | chr12:21888614-21889090 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 28-369 |
| Cow position: | chr12:37562429-37562070 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 49-250 |
| Cow position: | chr12:24205935-24205727 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 149 |
| Conread position: | 49-296 |
| Cow position: | chr12:7961341-7961600 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 174 |
| Conread position: | 49-316 |
| Cow position: | chr12:23159106-23159380 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 64, 165 |
| Conread position: | 49-362 |
| Cow position: | chr12:3094217-3094564 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 259 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 25, 261 |
| Conread position: | 49-367 |
| Cow position: | chr12:48416336-48416682 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 24, 129 |
| Conread position: | 49-368 |
| Cow position: | chr12:7674307-7673963 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 249 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 28, 135 |
| Conread position: | 49-368 |
| Cow position: | chr12:20847537-20847200 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 70, 133 |
| Conread position: | 49-368 |
| Cow position: | chr12:21314026-21314368 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 26, 144 |
| Conread position: | 49-368 |
| Cow position: | chr12:30687147-30686802 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 247 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 26, 152 |
| Conread position: | 49-368 |
| Cow position: | chr12:42856126-42856470 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 49-369 |
| Cow position: | chr12:5226639-5226309 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 30, 135 |
| Conread position: | 49-369 |
| Cow position: | chr12:8774069-8773726 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 26, 140 |
| Conread position: | 49-369 |
| Cow position: | chr12:22594159-22593826 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 49-369 |
| Cow position: | chr12:23137923-23138268 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 247 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 24, 135 |
| Conread position: | 49-377 |
| Cow position: | chr12:25313308-25313660 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 152 |
| Conread position: | 49-383 |
| Cow position: | chr12:21075233-21074883 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 30, 142 |
| Conread position: | 49-386 |
| Cow position: | chr12:17718705-17718344 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 255 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 28, 39 |
| Conread position: | 49-386 |
| Cow position: | chr12:19871619-19871258 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 263 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 26, 146 |
| Conread position: | 49-386 |
| Cow position: | chr12:21665541-21665179 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 254 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 28, 135 |
| Conread position: | 49-386 |
| Cow position: | chr12:22748621-22748258 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 258 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 31, 135 |
| Conread position: | 49-387 |
| Cow position: | chr12:24557981-24557622 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 143 |
| Conread position: | 49-387 |
| Cow position: | chr12:32656954-32656594 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 28, 159 |
| Conread position: | 50-289 |
| Cow position: | chr12:12177837-12178080 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 25, 146 |
| Conread position: | 50-312 |
| Cow position: | chr12:36568941-36569219 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 50-319 |
| Cow position: | chr12:15821126-15820849 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 25, 44 |
| Conread position: | 50-369 |
| Cow position: | chr12:9988283-9988626 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 245 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 27, 132 |
| Conread position: | 50-369 |
| Cow position: | chr12:42604779-42605115 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 240 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 27, 110 |
| Conread position: | 50-386 |
| Cow position: | chr12:5713371-5713007 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 50-386 |
| Cow position: | chr12:8841654-8842012 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 50-386 |
| Cow position: | chr12:11582564-11582213 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 27, 151 |
| Conread position: | 50-386 |
| Cow position: | chr12:43681409-43681048 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 51-292 |
| Cow position: | chr12:7885480-7885742 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 200 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 51-316 |
| Cow position: | chr12:22979490-22979770 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 26, 133 |
| Conread position: | 51-367 |
| Cow position: | chr12:21904760-21904429 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 51-381 |
| Cow position: | chr12:19198437-19198091 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 113 |
| Conread position: | 51-386 |
| Cow position: | chr12:21250911-21251268 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 26, 153 |
| Conread position: | 57-386 |
| Cow position: | chr12:35547731-35548083 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 20, 126 |
| Conread position: | 63-386 |
| Cow position: | chr12:34176744-34176408 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 134, 109 |
| Conread position: | 109-369 |
| Cow position: | chr12:35311585-35311852 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 86, 50 |
| Conread position: | 109-385 |
| Cow position: | chr12:40306632-40306343 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 109-386 |
| Cow position: | chr12:6106021-6106305 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 88, 62 |
| Conread position: | 110-252 |
| Cow position: | chr12:19868546-19868404 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-386 |
| Cow position: | chr12:45145367-45145096 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 69, 44 |
Show alignments to all cow chromosomes.