Cow genome map

Conread name: Pig2-130H03

Conread position: 1-128
Cow position: chr11:38874470-38874341 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 1-135
Cow position: chr11:47004277-47004416 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 1-136
Cow position: chr11:70273238-70273375 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 1-140
Cow position: chr11:49231806-49231946 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 104
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 1-141
Cow position: chr11:52983609-52983749 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 1-141
Cow position: chr11:55203527-55203386 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 1-159
Cow position: chr11:33526985-33527144 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 101, 0

Conread position: 1-161
Cow position: chr11:4199205-4199364 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 114
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 1-162
Cow position: chr11:15772781-15772618 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 18, 76

Conread position: 1-162
Cow position: chr11:42044061-42043902 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 20, 79

Conread position: 1-162
Cow position: chr11:51729220-51729381 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 1-162
Cow position: chr11:67912220-67912057 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 25, 104

Conread position: 1-163
Cow position: chr11:3739885-3740049 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 24, 0

Conread position: 1-163
Cow position: chr11:19247267-19247104 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 22, 84

Conread position: 1-163
Cow position: chr11:23586568-23586734 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 1-163
Cow position: chr11:31875023-31875188 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 19, 41

Conread position: 1-163
Cow position: chr11:33345376-33345541 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 19, 0

Conread position: 1-163
Cow position: chr11:40459043-40459204 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 142, 19

Conread position: 1-163
Cow position: chr11:49152884-49153044 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 17, 0

Conread position: 1-163
Cow position: chr11:52690589-52690426 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 14, 92

Conread position: 1-163
Cow position: chr11:53510569-53510407 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 12, 88

Conread position: 1-163
Cow position: chr11:55744404-55744563 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 19, 0

Conread position: 1-163
Cow position: chr11:76889980-76890141 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 62, 21

Conread position: 1-163
Cow position: chr11:80761446-80761282 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 19, 95

Conread position: 1-164
Cow position: chr11:377711-377545 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 1-164
Cow position: chr11:1157579-1157740 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 1-165
Cow position: chr11:84890788-84890620 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 20, 114

Conread position: 1-167
Cow position: chr11:77758826-77758661 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 23, 36

Conread position: 1-168
Cow position: chr11:36112358-36112520 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 1-169
Cow position: chr11:27565268-27565435 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 142, 14

Conread position: 1-172
Cow position: chr11:80413080-80412909 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 68, 24

Conread position: 1-173
Cow position: chr11:55761803-55761972 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 166, 19

Conread position: 1-173
Cow position: chr11:78381126-78380958 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 164, 21

Conread position: 1-173
Cow position: chr11:87155452-87155626 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 22, 78

Conread position: 1-177
Cow position: chr11:33310904-33311086 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 24, 166

Conread position: 1-177
Cow position: chr11:34113196-34113375 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 20, 39

Conread position: 1-177
Cow position: chr11:40478917-40478744 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 27, 0

Conread position: 1-179
Cow position: chr11:34962997-34963182 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 22, 97

Conread position: 1-181
Cow position: chr11:48474636-48474818 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 18, 0

Conread position: 1-182
Cow position: chr11:17831288-17831107 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 29, 72

Conread position: 1-182
Cow position: chr11:33753971-33753796 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 160, 54

Conread position: 1-182
Cow position: chr11:50472250-50472434 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 141
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 23, 59

Conread position: 1-182
Cow position: chr11:64868082-64867908 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 1-182
Cow position: chr11:83033304-83033124 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 17, 85

Conread position: 1-184
Cow position: chr11:62778379-62778559 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 159, 21

Conread position: 1-185
Cow position: chr11:39462554-39462736 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 144
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 19, 167

Conread position: 1-185
Cow position: chr11:56288480-56288662 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 130
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 70, 10

Conread position: 1-185
Cow position: chr11:63847781-63847963 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 59, 21

Conread position: 1-187
Cow position: chr11:47837250-47837438 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 144
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 20, 64

Conread position: 1-188
Cow position: chr11:6233947-6233760 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 144
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 27, 17

Conread position: 1-188
Cow position: chr11:13592669-13592857 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 26, 10

Conread position: 1-188
Cow position: chr11:37804623-37804434 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 27, 162

Conread position: 1-188
Cow position: chr11:63435450-63435640 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 149
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 19, 90

Conread position: 1-189
Cow position: chr11:49148971-49149170 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 16, 194

Conread position: 1-189
Cow position: chr11:70756413-70756598 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 23, 57

Conread position: 1-189
Cow position: chr11:76606608-76606796 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 64, 18

Conread position: 1-190
Cow position: chr11:2084074-2084265 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 145
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 20, 162

Conread position: 1-191
Cow position: chr11:2344187-2344377 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 17

Conread position: 1-195
Cow position: chr11:4663113-4662921 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 136, 0

Conread position: 1-195
Cow position: chr11:31227896-31228091 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 132
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 163, 0

Conread position: 1-195
Cow position: chr11:41313724-41313528 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 23, 0

Conread position: 1-195
Cow position: chr11:65607758-65607560 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 65, 149

Conread position: 1-198
Cow position: chr11:7924658-7924462 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 12, 104

Conread position: 1-203
Cow position: chr11:71868671-71868468 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 10, 160

Conread position: 1-261
Cow position: chr11:38236184-38236443 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 183
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 24, 159

Conread position: 1-293
Cow position: chr11:79019128-79018847 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 201
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 18, 63

Conread position: 2-151
Cow position: chr11:48306413-48306262 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 2-161
Cow position: chr11:38334458-38334618 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 157, 0

Conread position: 2-163
Cow position: chr11:71807637-71807471 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 14, 51

Conread position: 2-172
Cow position: chr11:23232581-23232416 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 78, 108

Conread position: 2-177
Cow position: chr11:71935021-71934845 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 11, 140

Conread position: 2-189
Cow position: chr11:83925984-83926165 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 163, 57

Conread position: 2-203
Cow position: chr11:13940126-13940322 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 9

Conread position: 2-295
Cow position: chr11:30879611-30879888 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 198
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 2-297
Cow position: chr11:61958812-61958523 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 218
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 10, 145

Conread position: 3-136
Cow position: chr11:41176015-41175880 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 3-163
Cow position: chr11:30639013-30638854 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 3-166
Cow position: chr11:36920645-36920476 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 20, 75

Conread position: 3-170
Cow position: chr11:58588281-58588447 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 17, 105

Conread position: 3-172
Cow position: chr11:42083406-42083573 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 122
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 21, 79

Conread position: 3-173
Cow position: chr11:84385701-84385532 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 66, 52

Conread position: 3-184
Cow position: chr11:40573398-40573218 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 21, 77

Conread position: 3-188
Cow position: chr11:13043211-13043030 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 149
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 17, 163

Conread position: 3-188
Cow position: chr11:68913077-68913261 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 17, 0

Conread position: 3-189
Cow position: chr11:64351859-64351670 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 17, 161

Conread position: 4-154
Cow position: chr11:55333846-55333996 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 110
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 4-163
Cow position: chr11:7590129-7590284 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 79, 0

Conread position: 4-227
Cow position: chr11:66518425-66518645 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 20, 122

Conread position: 5-150
Cow position: chr11:77546353-77546498 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 5-163
Cow position: chr11:13499952-13500111 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 134
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 14, 57

Conread position: 5-176
Cow position: chr11:63482489-63482321 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 15, 76

Conread position: 7-162
Cow position: chr11:63909724-63909572 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 77, 0

Conread position: 7-165
Cow position: chr11:62754380-62754220 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 11, 0

Conread position: 8-157
Cow position: chr11:49934790-49934641 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 8-161
Cow position: chr11:62230120-62230274 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 12, 0

Conread position: 8-163
Cow position: chr11:70086275-70086428 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 102, 0

Conread position: 8-188
Cow position: chr11:77745310-77745131 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 134, 14

Conread position: 11-163
Cow position: chr11:68173472-68173627 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 11-237
Cow position: chr11:29659503-29659732 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 174, 213

Conread position: 12-163
Cow position: chr11:69168528-69168682 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 14-163
Cow position: chr11:15373786-15373935 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 69, 8

Conread position: 14-185
Cow position: chr11:372758-372594 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 129, 111

Conread position: 14-233
Cow position: chr11:28078450-28078658 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 151, 72

Conread position: 17-194
Cow position: chr11:37778881-37778700 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 128
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 148

Conread position: 17-198
Cow position: chr11:45849549-45849367 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 77, 9

Conread position: 18-165
Cow position: chr11:48649923-48650070 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 21-163
Cow position: chr11:71854325-71854188 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 99, 0

Conread position: 22-130
Cow position: chr11:65624838-65624731 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 22-142
Cow position: chr11:8584282-8584400 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 97, 0

Conread position: 22-154
Cow position: chr11:48512119-48512250 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 56, 0

Conread position: 22-163
Cow position: chr11:1362513-1362372 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 22-163
Cow position: chr11:35669997-35669857 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 102, 0

Conread position: 22-163
Cow position: chr11:59024405-59024265 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 25, 14

Conread position: 22-163
Cow position: chr11:66041239-66041374 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 22-164
Cow position: chr11:16320241-16320380 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 118
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 37, 0

Conread position: 22-165
Cow position: chr11:56734585-56734726 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 22-173
Cow position: chr11:29983762-29983612 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 95, 0

Conread position: 22-173
Cow position: chr11:61137220-61137068 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 143, 0

Conread position: 22-181
Cow position: chr11:27913239-27913400 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 143, 0

Conread position: 22-182
Cow position: chr11:34692808-34692967 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 136, 0

Conread position: 22-184
Cow position: chr11:53816812-53816969 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 33, 0

Conread position: 22-185
Cow position: chr11:17721847-17721684 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 43, 36

Conread position: 22-185
Cow position: chr11:21507957-21508121 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 80, 134

Conread position: 22-185
Cow position: chr11:70483896-70483734 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 15, 0

Conread position: 22-185
Cow position: chr11:82289537-82289697 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 142, 58

Conread position: 22-188
Cow position: chr11:17889776-17889609 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 80, 139

Conread position: 22-188
Cow position: chr11:46747906-46747741 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 137, 0

Conread position: 22-188
Cow position: chr11:85723652-85723812 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 119
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 103, 0

Conread position: 22-195
Cow position: chr11:44031960-44032140 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 22-198
Cow position: chr11:23138099-23137923 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 117, 42

Conread position: 22-233
Cow position: chr11:63484901-63485101 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 137, 34

Conread position: 22-297
Cow position: chr11:3234030-3234311 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 189
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 113, 125

Conread position: 23-160
Cow position: chr11:61130709-61130574 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 23-164
Cow position: chr11:21910671-21910530 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 23-178
Cow position: chr11:897629-897786 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 113
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 139, 0

Conread position: 23-182
Cow position: chr11:48063845-48063687 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 143, 0

Conread position: 23-184
Cow position: chr11:33414192-33414352 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 137, 0

Conread position: 23-185
Cow position: chr11:35352083-35351924 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 78, 40

Conread position: 23-185
Cow position: chr11:56290467-56290630 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 142, 0

Conread position: 23-185
Cow position: chr11:62889938-62889775 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 142, 0

Conread position: 23-190
Cow position: chr11:77128616-77128784 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 118
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 143, 0

Conread position: 23-297
Cow position: chr11:56654511-56654798 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 192
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 130, 243

Conread position: 24-172
Cow position: chr11:7307588-7307738 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 79, 87

Conread position: 24-173
Cow position: chr11:29677159-29677312 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 24-173
Cow position: chr11:48659891-48660041 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 141, 0

Conread position: 24-181
Cow position: chr11:82731041-82730883 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 141, 0

Conread position: 24-188
Cow position: chr11:35109581-35109419 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 76, 50

Conread position: 24-189
Cow position: chr11:65826794-65826627 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 139, 0

Conread position: 24-195
Cow position: chr11:84977402-84977232 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 103, 151

Conread position: 25-148
Cow position: chr11:19232994-19232871 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 25-162
Cow position: chr11:41986088-41985951 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 25-177
Cow position: chr11:73354102-73353950 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 111
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 26-163
Cow position: chr11:17227683-17227549 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 26-163
Cow position: chr11:29946955-29946818 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 26-163
Cow position: chr11:66188358-66188222 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 120, 0

Conread position: 26-184
Cow position: chr11:62155597-62155752 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 134, 0

Conread position: 27-185
Cow position: chr11:30808634-30808475 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 138, 0

Conread position: 27-185
Cow position: chr11:36520834-36520995 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 74, 144

Conread position: 30-188
Cow position: chr11:53717844-53717688 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 113, 119

Conread position: 31-163
Cow position: chr11:58938781-58938649 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 34-163
Cow position: chr11:21173467-21173342 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 35-190
Cow position: chr11:18509063-18508909 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 125, 0

Conread position: 36-173
Cow position: chr11:69415628-69415492 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 129, 44

Conread position: 36-173
Cow position: chr11:69417372-69417508 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 129, 44

Conread position: 37-216
Cow position: chr11:66939623-66939443 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 150, 122

Conread position: 40-163
Cow position: chr11:43914264-43914387 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 41-163
Cow position: chr11:60486446-60486323 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 42-176
Cow position: chr11:41215707-41215840 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 117, 0

Conread position: 44-154
Cow position: chr11:40860582-40860472 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 87
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 47-163
Cow position: chr11:15683000-15682884 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 47-182
Cow position: chr11:42084696-42084560 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 102
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 118, 0

Conread position: 47-188
Cow position: chr11:46884353-46884493 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 113, 0

Conread position: 47-198
Cow position: chr11:17517378-17517531 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 118, 0

Conread position: 51-185
Cow position: chr11:18792084-18791952 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 54, 116

Conread position: 52-194
Cow position: chr11:87172092-87171951 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 105
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 106, 0

Conread position: 56-164
Cow position: chr11:80586263-80586371 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 64-163
Cow position: chr11:60720459-60720360 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 86
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 64-179
Cow position: chr11:21830213-21830099 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 95, 0

Conread position: 66-163
Cow position: chr11:62808507-62808411 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 66-165
Cow position: chr11:9699246-9699147 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 77, 83

Conread position: 66-172
Cow position: chr11:46499009-46499115 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 66-181
Cow position: chr11:65843075-65842964 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 66-185
Cow position: chr11:37982579-37982459 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 99, 0

Conread position: 66-188
Cow position: chr11:2835857-2835978 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 94, 0

Conread position: 66-275
Cow position: chr11:59916144-59916351 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 9, 121

Conread position: 68-176
Cow position: chr11:32615736-32615844 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 68-184
Cow position: chr11:71767602-71767719 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 91, 0

Conread position: 69-163
Cow position: chr11:46452137-46452231 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 69-163
Cow position: chr11:70600827-70600733 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 70-178
Cow position: chr11:19549483-19549589 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 73-163
Cow position: chr11:31440096-31440006 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 77
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 77-171
Cow position: chr11:13405023-13404929 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 79
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 78-176
Cow position: chr11:78780848-78780749 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 87, 0

Conread position: 80-297
Cow position: chr11:34623183-34623385 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 85, 0

Show alignments to all cow chromosomes.