Cow genome map

Conread name: Pig2-130H03

Conread position: 1-130
Cow position: chr12:3906385-3906515 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 20, 75

Conread position: 1-141
Cow position: chr12:25452535-25452394 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 26, 0

Conread position: 1-152
Cow position: chr12:8868965-8868818 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 21, 82

Conread position: 1-152
Cow position: chr12:18964015-18963864 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-157
Cow position: chr12:42174332-42174485 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 113
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 1-160
Cow position: chr12:23855749-23855904 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 19, 86

Conread position: 1-162
Cow position: chr12:30438153-30438311 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 12, 25

Conread position: 1-163
Cow position: chr12:4719857-4720022 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 20, 0

Conread position: 1-163
Cow position: chr12:6410822-6410659 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 131
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 64, 58

Conread position: 1-163
Cow position: chr12:7977947-7978112 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 15, 88

Conread position: 1-163
Cow position: chr12:9914701-9914864 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 131
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 20, 0

Conread position: 1-163
Cow position: chr12:17671348-17671505 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 22

Conread position: 1-163
Cow position: chr12:25188098-25188263 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 14, 152

Conread position: 1-163
Cow position: chr12:35241191-35241031 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 29, 0

Conread position: 1-163
Cow position: chr12:40910379-40910211 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 20, 152

Conread position: 1-164
Cow position: chr12:28582592-28582433 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 12, 80

Conread position: 1-165
Cow position: chr12:27563467-27563300 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 18, 0

Conread position: 1-169
Cow position: chr12:18103699-18103530 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 137
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 29, 61

Conread position: 1-169
Cow position: chr12:44733180-44733010 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 1-170
Cow position: chr12:3615912-3616079 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 52

Conread position: 1-172
Cow position: chr12:5714540-5714716 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 20, 112

Conread position: 1-173
Cow position: chr12:23916755-23916928 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 19, 83

Conread position: 1-173
Cow position: chr12:44517824-44517652 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 164, 19

Conread position: 1-176
Cow position: chr12:35771107-35770932 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 139
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 166, 19

Conread position: 1-177
Cow position: chr12:3623606-3623786 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 25, 0

Conread position: 1-177
Cow position: chr12:6210246-6210071 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 6, 141

Conread position: 1-177
Cow position: chr12:10942197-10942377 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 22, 0

Conread position: 1-177
Cow position: chr12:17881773-17881949 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 20, 59

Conread position: 1-177
Cow position: chr12:30805766-30805946 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 88, 154

Conread position: 1-179
Cow position: chr12:3197182-3197358 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 12, 27

Conread position: 1-179
Cow position: chr12:42966911-42967086 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 13, 73

Conread position: 1-181
Cow position: chr12:42285880-42286062 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 18, 176

Conread position: 1-184
Cow position: chr12:38126615-38126429 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 19, 163

Conread position: 1-185
Cow position: chr12:4341828-4341646 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 164, 19

Conread position: 1-185
Cow position: chr12:33323583-33323399 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 142, 160

Conread position: 1-185
Cow position: chr12:41581030-41581209 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 142, 12

Conread position: 1-186
Cow position: chr12:29779995-29779814 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 159, 19

Conread position: 1-188
Cow position: chr12:21780076-21780260 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 151
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 21, 0

Conread position: 1-188
Cow position: chr12:24152249-24152438 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 149
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 27, 14

Conread position: 1-188
Cow position: chr12:30590679-30590865 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 75, 20

Conread position: 1-188
Cow position: chr12:31269062-31269256 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 18, 0

Conread position: 1-188
Cow position: chr12:41159502-41159686 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 26, 85

Conread position: 1-194
Cow position: chr12:36501034-36500844 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 134
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 96, 21

Conread position: 1-207
Cow position: chr12:22881966-22882171 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 11, 151

Conread position: 1-258
Cow position: chr12:7000692-7000433 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 184
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 20, 111

Conread position: 2-162
Cow position: chr12:4134990-4135151 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 19, 0

Conread position: 2-163
Cow position: chr12:5635536-5635378 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 2-163
Cow position: chr12:35368554-35368717 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 132
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 17, 0

Conread position: 2-163
Cow position: chr12:37008791-37008632 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 23, 89

Conread position: 2-167
Cow position: chr12:29483970-29483807 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 2-176
Cow position: chr12:15173737-15173910 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 158, 0

Conread position: 2-185
Cow position: chr12:1773752-1773563 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 2-188
Cow position: chr12:33976113-33976299 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 3-162
Cow position: chr12:24023885-24023728 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 16, 0

Conread position: 3-163
Cow position: chr12:30210394-30210558 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 21, 0

Conread position: 3-174
Cow position: chr12:5940256-5940427 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 69, 22

Conread position: 3-181
Cow position: chr12:18943744-18943566 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 24, 156

Conread position: 3-215
Cow position: chr12:11587687-11587904 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 17, 0

Conread position: 4-185
Cow position: chr12:3880066-3879882 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 144
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 22, 58

Conread position: 5-169
Cow position: chr12:40158103-40157943 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 160, 17

Conread position: 7-186
Cow position: chr12:30662031-30661853 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 152, 0

Conread position: 7-297
Cow position: chr12:17774713-17774998 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 194
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 180, 161

Conread position: 8-188
Cow position: chr12:6241238-6241420 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 5, 0

Conread position: 8-195
Cow position: chr12:11836152-11836342 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 12-181
Cow position: chr12:18766049-18765877 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 155, 0

Conread position: 15-177
Cow position: chr12:7920169-7920332 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 150, 0

Conread position: 16-176
Cow position: chr12:4797228-4797388 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 19-181
Cow position: chr12:4793128-4793290 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 146, 156

Conread position: 22-154
Cow position: chr12:45990050-45989921 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 79, 0

Conread position: 22-162
Cow position: chr12:45168085-45167946 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 122, 0

Conread position: 22-163
Cow position: chr12:6754130-6754271 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 22-163
Cow position: chr12:9129843-9129983 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 13, 17

Conread position: 22-173
Cow position: chr12:10895619-10895467 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 111
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 143, 0

Conread position: 22-177
Cow position: chr12:22540141-22540293 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 135, 0

Conread position: 22-183
Cow position: chr12:42160624-42160462 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 137, 17

Conread position: 22-185
Cow position: chr12:30919359-30919523 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 145, 0

Conread position: 22-185
Cow position: chr12:37993798-37993636 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 138, 0

Conread position: 22-188
Cow position: chr12:6188180-6188013 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 140, 0

Conread position: 22-188
Cow position: chr12:15495832-15495998 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 48, 138

Conread position: 22-190
Cow position: chr12:14222916-14223081 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 159, 22

Conread position: 22-195
Cow position: chr12:4866751-4866925 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 143, 0

Conread position: 22-195
Cow position: chr12:29057321-29057501 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 22-195
Cow position: chr12:36994182-36994010 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 134, 153

Conread position: 23-163
Cow position: chr12:22515797-22515660 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 109, 0

Conread position: 23-176
Cow position: chr12:42181194-42181040 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 136, 0

Conread position: 24-233
Cow position: chr12:4768862-4769066 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 141
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 25-163
Cow position: chr12:15700015-15700155 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 78, 96

Conread position: 28-177
Cow position: chr12:7311320-7311470 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 89, 0

Conread position: 29-169
Cow position: chr12:43354182-43354046 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 37-163
Cow position: chr12:9439502-9439377 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 78, 0

Conread position: 41-163
Cow position: chr12:26868860-26868739 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 41-178
Cow position: chr12:43854847-43854984 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 124, 45

Conread position: 42-163
Cow position: chr12:43474714-43474835 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 44-194
Cow position: chr12:3586074-3586225 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 121, 0

Conread position: 46-163
Cow position: chr12:27572282-27572165 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 65-185
Cow position: chr12:3057064-3057184 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 92
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 65-297
Cow position: chr12:7514787-7515024 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 160
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 14, 106

Conread position: 66-173
Cow position: chr12:6666552-6666654 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 66-195
Cow position: chr12:44542244-44542374 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 101, 0

Conread position: 67-164
Cow position: chr12:24397184-24397088 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 84
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 69-163
Cow position: chr12:22469493-22469587 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 79
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 71-163
Cow position: chr12:11106598-11106506 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 79
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.