Cow genome map

Conread name: Pig2-130H03

Conread position: 1-136
Cow position: chr20:34001399-34001261 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 19, 121

Conread position: 1-138
Cow position: chr20:23506476-23506339 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 1-154
Cow position: chr20:21928899-21929052 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-161
Cow position: chr20:22484856-22485013 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 1-162
Cow position: chr20:25953260-25953419 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 107, 17

Conread position: 1-163
Cow position: chr20:6248610-6248445 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 132
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 19, 0

Conread position: 1-163
Cow position: chr20:9537130-9537288 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 28, 87

Conread position: 1-163
Cow position: chr20:10772197-10772363 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 25, 103

Conread position: 1-163
Cow position: chr20:11359636-11359476 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 131
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 28, 0

Conread position: 1-163
Cow position: chr20:23870827-23870663 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 23, 62

Conread position: 1-164
Cow position: chr20:33144559-33144396 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-164
Cow position: chr20:34108105-34108262 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 1-165
Cow position: chr20:9433579-9433745 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 1-173
Cow position: chr20:6603033-6603207 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 20, 58

Conread position: 1-173
Cow position: chr20:20967312-20967488 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 140
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 19, 0

Conread position: 1-175
Cow position: chr20:35797602-35797774 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 87

Conread position: 1-176
Cow position: chr20:3599401-3599228 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 128, 79

Conread position: 1-176
Cow position: chr20:12581963-12581785 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 123
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 1-177
Cow position: chr20:2169730-2169552 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 19, 49

Conread position: 1-177
Cow position: chr20:13652373-13652198 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 165, 0

Conread position: 1-179
Cow position: chr20:16941297-16941117 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 141
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 21, 74

Conread position: 1-182
Cow position: chr20:11482141-11481961 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 130
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 19, 134

Conread position: 1-182
Cow position: chr20:19751301-19751483 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 164, 0

Conread position: 1-185
Cow position: chr20:354903-354724 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 78, 0

Conread position: 1-185
Cow position: chr20:5814562-5814739 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 21, 0

Conread position: 1-185
Cow position: chr20:15822546-15822724 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 1-185
Cow position: chr20:20056491-20056307 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 26, 40

Conread position: 1-185
Cow position: chr20:20099602-20099422 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 64, 13

Conread position: 1-185
Cow position: chr20:40157894-40158077 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 159, 0

Conread position: 1-187
Cow position: chr20:35741759-35741947 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 24, 156

Conread position: 1-188
Cow position: chr20:8429743-8429920 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 1-188
Cow position: chr20:34097964-34097771 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 17, 0

Conread position: 1-188
Cow position: chr20:40423109-40422921 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 133
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 81, 17

Conread position: 1-189
Cow position: chr20:6890708-6890891 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 163, 109

Conread position: 1-190
Cow position: chr20:6054522-6054327 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 18, 166

Conread position: 1-191
Cow position: chr20:21714749-21714950 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 155
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 18, 171

Conread position: 2-162
Cow position: chr20:15565831-15565674 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 2-163
Cow position: chr20:4945254-4945098 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 13, 0

Conread position: 2-173
Cow position: chr20:4334535-4334362 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 135
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 140, 0

Conread position: 3-163
Cow position: chr20:361189-361034 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 3-163
Cow position: chr20:5078619-5078783 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 3-163
Cow position: chr20:22959348-22959192 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 129
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 16, 0

Conread position: 3-184
Cow position: chr20:29845045-29845228 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 25, 145

Conread position: 3-185
Cow position: chr20:6372565-6372385 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 20, 76

Conread position: 3-239
Cow position: chr20:34777175-34777413 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 174
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 17, 145

Conread position: 4-269
Cow position: chr20:35146018-35146278 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 197, 155

Conread position: 5-160
Cow position: chr20:13025618-13025457 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 150

Conread position: 5-173
Cow position: chr20:5364925-5365093 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 15, 78

Conread position: 6-177
Cow position: chr20:33820456-33820625 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 152, 15

Conread position: 8-163
Cow position: chr20:20898591-20898434 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 15, 0

Conread position: 9-188
Cow position: chr20:33067358-33067182 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 157, 0

Conread position: 10-164
Cow position: chr20:41471103-41471257 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 11-163
Cow position: chr20:15589046-15589199 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 62, 11

Conread position: 15-176
Cow position: chr20:20934726-20934563 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 15-180
Cow position: chr20:14917293-14917457 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 144, 0

Conread position: 19-163
Cow position: chr20:5703483-5703628 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 95, 0

Conread position: 22-163
Cow position: chr20:1139752-1139612 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 79, 0

Conread position: 22-163
Cow position: chr20:40127329-40127187 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 45, 0

Conread position: 22-163
Cow position: chr20:40781976-40782117 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 116
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 22-163
Cow position: chr20:42458841-42458700 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 22-184
Cow position: chr20:23678702-23678535 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 84, 0

Conread position: 22-185
Cow position: chr20:23590732-23590572 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 27, 0

Conread position: 22-188
Cow position: chr20:24711855-24712021 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 58, 159

Conread position: 22-188
Cow position: chr20:39417884-39417725 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 22-189
Cow position: chr20:14739804-14739641 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 88, 0

Conread position: 24-154
Cow position: chr20:14759648-14759518 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 25-163
Cow position: chr20:30744703-30744565 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 26-176
Cow position: chr20:39415769-39415918 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 110
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 134, 0

Conread position: 26-185
Cow position: chr20:14282939-14283099 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 139, 0

Conread position: 26-188
Cow position: chr20:34202653-34202817 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 16, 0

Conread position: 27-182
Cow position: chr20:7709760-7709606 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 17, 0

Conread position: 28-162
Cow position: chr20:35727909-35727775 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 28-181
Cow position: chr20:580899-580745 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 137, 0

Conread position: 28-185
Cow position: chr20:35591627-35591472 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 29-163
Cow position: chr20:7417145-7417011 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 40-185
Cow position: chr20:21291693-21291837 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 105
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 119, 0

Conread position: 40-188
Cow position: chr20:29990414-29990268 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 61, 0

Conread position: 45-181
Cow position: chr20:21721248-21721385 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 120, 0

Conread position: 51-164
Cow position: chr20:2316381-2316268 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 51-182
Cow position: chr20:35442238-35442108 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 109, 0

Conread position: 52-172
Cow position: chr20:31077825-31077945 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 50

Conread position: 58-180
Cow position: chr20:38935004-38934880 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 108, 0

Conread position: 59-179
Cow position: chr20:26059178-26059057 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 104, 0

Conread position: 64-184
Cow position: chr20:7622924-7622805 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 101, 50

Conread position: 66-163
Cow position: chr20:13617285-13617382 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 77, 83

Conread position: 66-181
Cow position: chr20:2822929-2823045 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 99, 0

Conread position: 67-185
Cow position: chr20:5078332-5078450 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 67-280
Cow position: chr20:15846815-15847035 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 153
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 98, 111

Conread position: 70-188
Cow position: chr20:17544687-17544804 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 90, 0

Conread position: 71-173
Cow position: chr20:15515376-15515273 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 84
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 94, 0

Show alignments to all cow chromosomes.