Cow genome map

Conread name: Pig2-130H03

Conread position: 1-116
Cow position: chr27:24999734-24999850 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 1-141
Cow position: chr27:30868734-30868875 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 23, 0

Conread position: 1-154
Cow position: chr27:23890945-23890790 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 112
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 1-155
Cow position: chr27:29184832-29184986 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-157
Cow position: chr27:11435316-11435471 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 20, 128

Conread position: 1-162
Cow position: chr27:28931788-28931957 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 1-163
Cow position: chr27:1636929-1637092 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 129
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 18, 0

Conread position: 1-163
Cow position: chr27:15865617-15865450 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 132
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 19, 0

Conread position: 1-163
Cow position: chr27:16230930-16231094 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 64, 14

Conread position: 1-163
Cow position: chr27:17472815-17472656 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 19, 103

Conread position: 1-163
Cow position: chr27:23554324-23554483 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 84, 0

Conread position: 1-163
Cow position: chr27:26413247-26413411 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 10, 0

Conread position: 1-163
Cow position: chr27:29380862-29380698 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 18, 86

Conread position: 1-163
Cow position: chr27:30915013-30914853 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 25, 0

Conread position: 1-164
Cow position: chr27:15925347-15925188 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 1-164
Cow position: chr27:21453086-21453252 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 18, 0

Conread position: 1-173
Cow position: chr27:5553476-5553302 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 10, 78

Conread position: 1-176
Cow position: chr27:2592554-2592371 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 19, 0

Conread position: 1-176
Cow position: chr27:20812912-20812736 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 24, 167

Conread position: 1-177
Cow position: chr27:426976-426799 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 124
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 18, 90

Conread position: 1-177
Cow position: chr27:25277147-25276972 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 23, 85

Conread position: 1-177
Cow position: chr27:30359414-30359235 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 24, 0

Conread position: 1-182
Cow position: chr27:27064433-27064616 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 18, 0

Conread position: 1-184
Cow position: chr27:4386055-4386238 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 18, 160

Conread position: 1-184
Cow position: chr27:18507654-18507473 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 21, 0

Conread position: 1-184
Cow position: chr27:18922824-18923011 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 19, 93

Conread position: 1-184
Cow position: chr27:28518301-28518119 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 63, 21

Conread position: 1-185
Cow position: chr27:19660941-19660753 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 19, 0

Conread position: 1-190
Cow position: chr27:6925095-6924902 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 19, 164

Conread position: 1-190
Cow position: chr27:28921891-28922075 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 135
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 89, 17

Conread position: 1-241
Cow position: chr27:8168425-8168659 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 158, 0

Conread position: 1-266
Cow position: chr27:30988802-30988538 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 177
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 164, 89

Conread position: 2-155
Cow position: chr27:18593274-18593124 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 18, 62

Conread position: 2-161
Cow position: chr27:28260532-28260690 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 76, 0

Conread position: 2-162
Cow position: chr27:20803652-20803815 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 2-179
Cow position: chr27:17918310-17918485 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 141, 20

Conread position: 2-181
Cow position: chr27:13254796-13254974 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 156, 16

Conread position: 2-185
Cow position: chr27:11561781-11561597 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 25, 0

Conread position: 2-185
Cow position: chr27:11982643-11982823 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 20, 0

Conread position: 2-185
Cow position: chr27:24303946-24303769 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 2-188
Cow position: chr27:13317972-13318155 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 2-195
Cow position: chr27:24227789-24227989 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 141
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 28, 186

Conread position: 2-247
Cow position: chr27:27673016-27673252 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 169
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 3-140
Cow position: chr27:62668-62524 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 63, 17

Conread position: 3-163
Cow position: chr27:26188834-26188673 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 23, 79

Conread position: 3-167
Cow position: chr27:28472787-28472622 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 23, 59

Conread position: 3-176
Cow position: chr27:20584453-20584626 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 108, 87

Conread position: 3-185
Cow position: chr27:7649580-7649759 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 76, 12

Conread position: 3-185
Cow position: chr27:15643175-15642995 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 156, 19

Conread position: 3-185
Cow position: chr27:25809517-25809695 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 162, 22

Conread position: 5-177
Cow position: chr27:24371240-24371071 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 162, 13

Conread position: 8-184
Cow position: chr27:1789139-1789317 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 21, 51

Conread position: 8-185
Cow position: chr27:10992351-10992178 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 159, 72

Conread position: 15-177
Cow position: chr27:16088798-16088635 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 63, 133

Conread position: 22-161
Cow position: chr27:29603801-29603664 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 103
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 22-162
Cow position: chr27:8790756-8790899 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 22-163
Cow position: chr27:9977669-9977525 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 47, 41

Conread position: 22-163
Cow position: chr27:26852602-26852736 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 22-164
Cow position: chr27:1353567-1353425 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 22-164
Cow position: chr27:22245610-22245469 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 121, 84

Conread position: 22-165
Cow position: chr27:30389313-30389456 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 34, 94

Conread position: 22-169
Cow position: chr27:21393522-21393670 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 13, 0

Conread position: 22-173
Cow position: chr27:20552794-20552949 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 89, 0

Conread position: 22-174
Cow position: chr27:10653669-10653517 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 22-176
Cow position: chr27:15315501-15315350 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 22-177
Cow position: chr27:18435148-18435305 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 7, 0

Conread position: 22-182
Cow position: chr27:27641028-27641187 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 128
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 143, 82

Conread position: 22-185
Cow position: chr27:23860145-23859986 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 44, 59

Conread position: 22-188
Cow position: chr27:10979847-10979682 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 136
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 19, 10

Conread position: 22-297
Cow position: chr27:13917423-13917142 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 183
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 129, 0

Conread position: 23-160
Cow position: chr27:26121743-26121606 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 40, 32

Conread position: 23-185
Cow position: chr27:6302485-6302649 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 141, 83

Conread position: 23-185
Cow position: chr27:23148149-23147986 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 136, 0

Conread position: 23-185
Cow position: chr27:31170081-31170241 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 151, 69

Conread position: 24-163
Cow position: chr27:13940575-13940714 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 25-163
Cow position: chr27:22489258-22489120 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 25-163
Cow position: chr27:28290836-28290708 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 118, 34

Conread position: 25-173
Cow position: chr27:7935175-7935325 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 71, 0

Conread position: 27-192
Cow position: chr27:14957750-14957910 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 28-164
Cow position: chr27:19004345-19004481 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 28-189
Cow position: chr27:11480658-11480818 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 114
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 131, 0

Conread position: 29-154
Cow position: chr27:15332318-15332445 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 78, 0

Conread position: 40-163
Cow position: chr27:27648351-27648474 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 40-188
Cow position: chr27:19452968-19452821 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 133, 0

Conread position: 41-179
Cow position: chr27:20548776-20548639 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 128, 0

Conread position: 42-154
Cow position: chr27:6162446-6162558 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 45-181
Cow position: chr27:27255949-27255812 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 101
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 120, 0

Conread position: 51-179
Cow position: chr27:17918762-17918889 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 92, 98

Conread position: 54-163
Cow position: chr27:30665124-30665233 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 87
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 63-154
Cow position: chr27:22792775-22792684 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 80
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 64-188
Cow position: chr27:21951036-21951158 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 101, 0

Conread position: 66-161
Cow position: chr27:26118440-26118345 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 80
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 66-188
Cow position: chr27:232494-232373 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 94, 0

Conread position: 66-195
Cow position: chr27:20048574-20048444 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 99, 0

Conread position: 66-231
Cow position: chr27:29658775-29658942 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 99, 54

Conread position: 68-163
Cow position: chr27:26909653-26909748 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 84
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 68-185
Cow position: chr27:22153797-22153681 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 111, 0

Show alignments to all cow chromosomes.