Cow genome map

Conread name: Pig2-130H03

Conread position: 1-119
Cow position: chr28:5826907-5827024 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 1-135
Cow position: chr28:8408690-8408824 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-137
Cow position: chr28:3449257-3449395 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 28, 14

Conread position: 1-137
Cow position: chr28:25283157-25283286 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 1-151
Cow position: chr28:7228429-7228283 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 17, 23

Conread position: 1-154
Cow position: chr28:30746773-30746620 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 136, 17

Conread position: 1-162
Cow position: chr28:21598298-21598133 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 1-163
Cow position: chr28:3726258-3726091 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 132
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 21, 0

Conread position: 1-163
Cow position: chr28:5166722-5166885 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 28, 92

Conread position: 1-163
Cow position: chr28:20759746-20759584 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 25, 116

Conread position: 1-163
Cow position: chr28:23410369-23410205 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 89, 0

Conread position: 1-163
Cow position: chr28:23676094-23676257 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 11, 22

Conread position: 1-163
Cow position: chr28:26922411-26922250 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 1-163
Cow position: chr28:27161372-27161209 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 129
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 20, 111

Conread position: 1-163
Cow position: chr28:34843619-34843457 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 24, 91

Conread position: 1-164
Cow position: chr28:662062-662227 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 66, 58

Conread position: 1-164
Cow position: chr28:7009021-7008859 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 25, 0

Conread position: 1-164
Cow position: chr28:33322409-33322578 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 1-167
Cow position: chr28:16085279-16085447 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 18, 0

Conread position: 1-167
Cow position: chr28:32365798-32365965 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 24, 150

Conread position: 1-171
Cow position: chr28:23007778-23007604 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 1-173
Cow position: chr28:12672507-12672335 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 133, 10

Conread position: 1-176
Cow position: chr28:19222195-19222020 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 11, 44

Conread position: 1-177
Cow position: chr28:5235837-5236006 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 12, 36

Conread position: 1-177
Cow position: chr28:19564276-19564097 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 159

Conread position: 1-179
Cow position: chr28:4765631-4765809 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 149
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 103, 17

Conread position: 1-180
Cow position: chr28:17601597-17601418 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 164, 25

Conread position: 1-182
Cow position: chr28:2131971-2131786 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 131
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 21, 151

Conread position: 1-182
Cow position: chr28:32174585-32174767 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 68, 43

Conread position: 1-183
Cow position: chr28:4881281-4881101 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 146
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 164, 20

Conread position: 1-184
Cow position: chr28:23447868-23447690 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 150, 101

Conread position: 1-184
Cow position: chr28:28765949-28765765 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 24, 155

Conread position: 1-185
Cow position: chr28:4307948-4307761 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 147
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 28, 171

Conread position: 1-188
Cow position: chr28:751186-751367 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 131
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 1-188
Cow position: chr28:5144564-5144377 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 143
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 164, 24

Conread position: 1-188
Cow position: chr28:8347687-8347873 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 157, 0

Conread position: 1-188
Cow position: chr28:13527152-13527338 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 23, 10

Conread position: 1-188
Cow position: chr28:20397415-20397229 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 148
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 28, 166

Conread position: 1-188
Cow position: chr28:26743580-26743770 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 148
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 24, 14

Conread position: 1-189
Cow position: chr28:26982781-26982595 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 21, 0

Conread position: 1-190
Cow position: chr28:34230185-34230372 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 43, 18

Conread position: 1-192
Cow position: chr28:6059515-6059322 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 29, 0

Conread position: 1-226
Cow position: chr28:2752539-2752315 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 17, 160

Conread position: 1-227
Cow position: chr28:8147906-8147678 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 158, 21

Conread position: 1-239
Cow position: chr28:7388811-7388582 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 168
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 212, 62

Conread position: 1-239
Cow position: chr28:19079889-19079651 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 165
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 23, 10

Conread position: 1-297
Cow position: chr28:4841443-4841149 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 205
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 25, 164

Conread position: 2-163
Cow position: chr28:5650781-5650620 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 24, 128

Conread position: 2-177
Cow position: chr28:25249311-25249487 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 158, 0

Conread position: 3-149
Cow position: chr28:21502351-21502501 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 105, 22

Conread position: 3-163
Cow position: chr28:13090569-13090408 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 25, 55

Conread position: 3-164
Cow position: chr28:7156791-7156956 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 3-184
Cow position: chr28:29434472-29434288 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 3-185
Cow position: chr28:1632694-1632518 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 3-185
Cow position: chr28:7698022-7697841 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 17, 58

Conread position: 3-188
Cow position: chr28:15601233-15601418 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 79

Conread position: 3-297
Cow position: chr28:19026052-19025748 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 202
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 16, 63

Conread position: 4-188
Cow position: chr28:6283528-6283349 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 8-195
Cow position: chr28:11866703-11866514 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 19, 0

Conread position: 9-165
Cow position: chr28:5817803-5817962 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 16, 0

Conread position: 9-188
Cow position: chr28:17680584-17680764 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 141
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 10, 42

Conread position: 11-233
Cow position: chr28:4643803-4643580 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 155
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 190, 9

Conread position: 14-163
Cow position: chr28:24706865-24707015 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 14-165
Cow position: chr28:26719312-26719463 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 22-163
Cow position: chr28:10297833-10297969 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 22-173
Cow position: chr28:5236627-5236475 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 111
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 143, 0

Conread position: 22-177
Cow position: chr28:2077467-2077633 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 22-186
Cow position: chr28:5630075-5630238 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 139, 99

Conread position: 22-197
Cow position: chr28:2772690-2772864 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 143, 33

Conread position: 22-206
Cow position: chr28:2819752-2819937 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 143, 0

Conread position: 22-233
Cow position: chr28:3011292-3011077 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 95, 73

Conread position: 22-258
Cow position: chr28:5867704-5867933 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 171
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 187, 38

Conread position: 23-162
Cow position: chr28:31223579-31223442 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 95, 38

Conread position: 24-173
Cow position: chr28:21008686-21008538 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 75, 0

Conread position: 24-177
Cow position: chr28:19216800-19216952 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 7, 65

Conread position: 24-182
Cow position: chr28:8149653-8149492 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 140, 0

Conread position: 25-171
Cow position: chr28:14933938-14934085 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 138, 0

Conread position: 26-173
Cow position: chr28:2898970-2899118 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 139, 0

Conread position: 29-188
Cow position: chr28:8259612-8259771 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 33-173
Cow position: chr28:6563910-6563768 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 36-185
Cow position: chr28:19039028-19038882 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 129, 0

Conread position: 37-177
Cow position: chr28:8396327-8396468 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 103
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 128, 0

Conread position: 40-188
Cow position: chr28:6358419-6358271 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 41-185
Cow position: chr28:32179693-32179837 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 124, 39

Conread position: 41-292
Cow position: chr28:6971352-6971099 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 167
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 124, 149

Conread position: 43-188
Cow position: chr28:4163581-4163441 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 50-157
Cow position: chr28:16388911-16389018 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 85
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 51-173
Cow position: chr28:4022679-4022802 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 114, 0

Conread position: 66-163
Cow position: chr28:10958823-10958920 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 80
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 66-163
Cow position: chr28:16691944-16692041 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 86
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 66-177
Cow position: chr28:13448144-13448256 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 103, 0

Conread position: 66-182
Cow position: chr28:7265366-7265481 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 94, 0

Conread position: 66-184
Cow position: chr28:19024454-19024571 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 93, 0

Conread position: 67-215
Cow position: chr28:7885052-7885199 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 111, 92

Conread position: 69-220
Cow position: chr28:2743105-2743258 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 120, 151

Conread position: 70-187
Cow position: chr28:29042029-29041917 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 99
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 96, 0

Conread position: 71-177
Cow position: chr28:8258850-8258957 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 88, 0

Conread position: 75-162
Cow position: chr28:26269416-26269503 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.