Cow genome map
| Conread name: | Pig2-130H03 |
| Conread position: | 1-116 |
| Cow position: | chr29:2071624-2071507 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-143 |
| Cow position: | chr29:44988840-44988700 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-154 |
| Cow position: | chr29:23813089-23812937 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-157 |
| Cow position: | chr29:36632913-36632755 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1-160 |
| Cow position: | chr29:35292037-35292201 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-161 |
| Cow position: | chr29:34297622-34297459 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-163 |
| Cow position: | chr29:501148-501308 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 1-163 |
| Cow position: | chr29:13867263-13867099 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1-163 |
| Cow position: | chr29:25333515-25333350 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 20, 95 |
| Conread position: | 1-163 |
| Cow position: | chr29:32894217-32894374 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1-163 |
| Cow position: | chr29:42630070-42630230 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 1-164 |
| Cow position: | chr29:23825617-23825785 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-165 |
| Cow position: | chr29:28195564-28195408 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-169 |
| Cow position: | chr29:22519181-22519009 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 18, 131 |
| Conread position: | 1-173 |
| Cow position: | chr29:40994941-40994769 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 158, 89 |
| Conread position: | 1-176 |
| Cow position: | chr29:13373248-13373426 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 86, 18 |
| Conread position: | 1-177 |
| Cow position: | chr29:13639422-13639240 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-177 |
| Cow position: | chr29:22778228-22778048 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 91 |
| Conread position: | 1-181 |
| Cow position: | chr29:43544653-43544475 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 142, 60 |
| Conread position: | 1-182 |
| Cow position: | chr29:847694-847513 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 25, 35 |
| Conread position: | 1-182 |
| Cow position: | chr29:12025521-12025345 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 57 |
| Conread position: | 1-182 |
| Cow position: | chr29:29057128-29057307 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 170, 79 |
| Conread position: | 1-182 |
| Cow position: | chr29:40096912-40097093 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 94 |
| Conread position: | 1-184 |
| Cow position: | chr29:44378466-44378288 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 30, 92 |
| Conread position: | 1-185 |
| Cow position: | chr29:2263044-2262863 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 25, 84 |
| Conread position: | 1-185 |
| Cow position: | chr29:8669314-8669487 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 80 |
| Conread position: | 1-185 |
| Cow position: | chr29:31489270-31489456 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 164, 17 |
| Conread position: | 1-185 |
| Cow position: | chr29:32799759-32799579 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 20, 58 |
| Conread position: | 1-188 |
| Cow position: | chr29:5046601-5046789 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-188 |
| Cow position: | chr29:7103504-7103693 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 19, 162 |
| Conread position: | 1-188 |
| Cow position: | chr29:15947116-15947302 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 1-188 |
| Cow position: | chr29:17222362-17222550 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 1-188 |
| Cow position: | chr29:23874406-23874595 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 19, 162 |
| Conread position: | 1-188 |
| Cow position: | chr29:26017555-26017367 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 54, 160 |
| Conread position: | 1-188 |
| Cow position: | chr29:37618250-37618441 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 10, 164 |
| Conread position: | 1-195 |
| Cow position: | chr29:19428608-19428804 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 98, 133 |
| Conread position: | 2-133 |
| Cow position: | chr29:30713760-30713628 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 2-166 |
| Cow position: | chr29:6015072-6015240 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 2-181 |
| Cow position: | chr29:8004973-8004799 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 16 |
| Conread position: | 2-181 |
| Cow position: | chr29:22936220-22936399 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 12, 55 |
| Conread position: | 2-188 |
| Cow position: | chr29:27911542-27911725 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 57 |
| Conread position: | 2-227 |
| Cow position: | chr29:27926725-27926953 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 23, 75 |
| Conread position: | 3-164 |
| Cow position: | chr29:11053908-11053748 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 3-172 |
| Cow position: | chr29:3685565-3685392 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 91, 17 |
| Conread position: | 4-176 |
| Cow position: | chr29:20167374-20167548 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 5-173 |
| Cow position: | chr29:32290561-32290732 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 8-163 |
| Cow position: | chr29:31981787-31981942 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-173 |
| Cow position: | chr29:7310635-7310795 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 150, 13 |
| Conread position: | 11-163 |
| Cow position: | chr29:12309966-12310119 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 12-163 |
| Cow position: | chr29:27563032-27562882 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 21-162 |
| Cow position: | chr29:35258954-35259095 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-154 |
| Cow position: | chr29:17154749-17154880 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 22-154 |
| Cow position: | chr29:21509822-21509953 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 22-155 |
| Cow position: | chr29:8686300-8686433 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-160 |
| Cow position: | chr29:7966216-7966354 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-163 |
| Cow position: | chr29:4120824-4120965 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-163 |
| Cow position: | chr29:43252701-43252560 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-164 |
| Cow position: | chr29:9912146-9912287 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 22-172 |
| Cow position: | chr29:5210462-5210612 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 121, 72 |
| Conread position: | 22-173 |
| Cow position: | chr29:13028414-13028562 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 143, 58 |
| Conread position: | 22-178 |
| Cow position: | chr29:36220504-36220661 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 22-185 |
| Cow position: | chr29:17409305-17409467 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 22-188 |
| Cow position: | chr29:16609718-16609883 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 22-188 |
| Cow position: | chr29:21443368-21443203 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 23-163 |
| Cow position: | chr29:40299049-40298909 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-178 |
| Cow position: | chr29:35084251-35084095 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 23-180 |
| Cow position: | chr29:21196681-21196519 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 23-182 |
| Cow position: | chr29:44684074-44684228 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 23-193 |
| Cow position: | chr29:31934350-31934519 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 24-185 |
| Cow position: | chr29:16365916-16365751 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 41, 7 |
| Conread position: | 25-190 |
| Cow position: | chr29:24188092-24187928 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 26-173 |
| Cow position: | chr29:34359847-34359701 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 11, 39 |
| Conread position: | 31-173 |
| Cow position: | chr29:28979519-28979381 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 33-163 |
| Cow position: | chr29:34517502-34517380 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 36-183 |
| Cow position: | chr29:20604648-20604505 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 37-163 |
| Cow position: | chr29:38754954-38754826 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 51-163 |
| Cow position: | chr29:629537-629649 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 66-153 |
| Cow position: | chr29:39285509-39285596 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 66-179 |
| Cow position: | chr29:4441191-4441079 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 12, 67 |
| Conread position: | 66-185 |
| Cow position: | chr29:18878467-18878349 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 66-297 |
| Cow position: | chr29:32301765-32301999 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 136, 93 |
| Conread position: | 67-162 |
| Cow position: | chr29:22577164-22577069 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 68-184 |
| Cow position: | chr29:24051365-24051251 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 69-182 |
| Cow position: | chr29:43088328-43088437 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 72-185 |
| Cow position: | chr29:26631061-26631175 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 95, 0 |
Show alignments to all cow chromosomes.