Cow genome map
| Conread name: | Pig2-137D18 |
| Conread position: | 287-615 |
| Cow position: | chr16:16230134-16229791 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 55 |
| Conread position: | 287-615 |
| Cow position: | chr16:25087432-25087100 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 70 |
| Conread position: | 288-405 |
| Cow position: | chr16:2303949-2303833 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 288-405 |
| Cow position: | chr16:15811889-15811773 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 288-411 |
| Cow position: | chr16:29157478-29157354 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 288-430 |
| Cow position: | chr16:11634332-11634475 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 288-478 |
| Cow position: | chr16:37443697-37443890 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 157 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 288-489 |
| Cow position: | chr16:5876165-5875963 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 111, 66 |
| Conread position: | 288-503 |
| Cow position: | chr16:51402029-51402251 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 288-515 |
| Cow position: | chr16:18495924-18496153 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 84, 89 |
| Conread position: | 288-516 |
| Cow position: | chr16:46224733-46224966 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 169, 128 |
| Conread position: | 288-558 |
| Cow position: | chr16:19275951-19275681 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 62 |
| Conread position: | 288-573 |
| Cow position: | chr16:3149206-3149493 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 142, 69 |
| Conread position: | 288-580 |
| Cow position: | chr16:18668172-18667868 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 225 |
| Conread position: | 288-611 |
| Cow position: | chr16:7674638-7674969 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 288-612 |
| Cow position: | chr16:25173102-25172779 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 288-614 |
| Cow position: | chr16:3144574-3144905 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 69 |
| Conread position: | 288-614 |
| Cow position: | chr16:3331731-3331407 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 288-615 |
| Cow position: | chr16:3770190-3770526 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 69 |
| Conread position: | 288-615 |
| Cow position: | chr16:10440064-10439734 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 58 |
| Conread position: | 288-615 |
| Cow position: | chr16:14663485-14663819 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 288-615 |
| Cow position: | chr16:15980565-15980899 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 69 |
| Conread position: | 288-615 |
| Cow position: | chr16:16268073-16268398 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 288-615 |
| Cow position: | chr16:25343797-25343460 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 288-615 |
| Cow position: | chr16:26665537-26665217 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 73 |
| Conread position: | 288-615 |
| Cow position: | chr16:28435317-28435640 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 288-615 |
| Cow position: | chr16:29048851-29048513 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 288-615 |
| Cow position: | chr16:29207390-29207735 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 288-615 |
| Cow position: | chr16:32325676-32325337 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 288-615 |
| Cow position: | chr16:34532126-34531809 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 290, 69 |
| Conread position: | 288-615 |
| Cow position: | chr16:41684472-41684795 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 69 |
| Conread position: | 288-615 |
| Cow position: | chr16:42734803-42735132 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 60 |
| Conread position: | 288-615 |
| Cow position: | chr16:43895442-43895778 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 288-615 |
| Cow position: | chr16:46521229-46521566 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 288-615 |
| Cow position: | chr16:54323499-54323838 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 291-458 |
| Cow position: | chr16:15411230-15411396 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-479 |
| Cow position: | chr16:23097373-23097569 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-484 |
| Cow position: | chr16:4388554-4388359 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-489 |
| Cow position: | chr16:2481298-2481503 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 113, 65 |
| Conread position: | 291-489 |
| Cow position: | chr16:5526284-5526490 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-501 |
| Cow position: | chr16:3010657-3010442 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-557 |
| Cow position: | chr16:24406733-24406460 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 29 |
| Conread position: | 291-579 |
| Cow position: | chr16:20277671-20277375 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-579 |
| Cow position: | chr16:41033121-41032825 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-579 |
| Cow position: | chr16:53445953-53446249 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-597 |
| Cow position: | chr16:24621880-24622194 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-600 |
| Cow position: | chr16:3348626-3348306 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 66 |
| Conread position: | 291-613 |
| Cow position: | chr16:34361-34030 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 70 |
| Conread position: | 291-613 |
| Cow position: | chr16:22799852-22800185 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-613 |
| Cow position: | chr16:36240974-36240644 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-614 |
| Cow position: | chr16:23876706-23877040 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-614 |
| Cow position: | chr16:26652437-26652103 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-615 |
| Cow position: | chr16:194088-194414 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 66 |
| Conread position: | 291-615 |
| Cow position: | chr16:2890694-2891029 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-615 |
| Cow position: | chr16:7466431-7466096 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-615 |
| Cow position: | chr16:8814286-8814621 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-615 |
| Cow position: | chr16:10373864-10374197 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-615 |
| Cow position: | chr16:11285039-11284707 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-615 |
| Cow position: | chr16:21189052-21188717 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 66 |
| Conread position: | 291-615 |
| Cow position: | chr16:23365092-23365424 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 66 |
| Conread position: | 291-615 |
| Cow position: | chr16:28168500-28168834 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-615 |
| Cow position: | chr16:28194482-28194817 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-615 |
| Cow position: | chr16:39034883-39035215 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 65 |
| Conread position: | 291-615 |
| Cow position: | chr16:41161646-41161981 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-615 |
| Cow position: | chr16:42162566-42162231 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-615 |
| Cow position: | chr16:47403201-47402869 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 291-615 |
| Cow position: | chr16:47787776-47787441 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 294-453 |
| Cow position: | chr16:5762598-5762437 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 110, 63 |
| Conread position: | 294-583 |
| Cow position: | chr16:34505512-34505217 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 63 |
| Conread position: | 294-613 |
| Cow position: | chr16:2273877-2273553 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 63 |
| Conread position: | 294-614 |
| Cow position: | chr16:43771309-43770992 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 63 |
| Conread position: | 294-615 |
| Cow position: | chr16:16239283-16239612 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 67 |
| Conread position: | 296-615 |
| Cow position: | chr16:23672425-23672095 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 61 |
| Conread position: | 297-532 |
| Cow position: | chr16:45704979-45705217 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 87, 60 |
| Conread position: | 298-508 |
| Cow position: | chr16:44128029-44128233 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 105, 63 |
| Conread position: | 298-615 |
| Cow position: | chr16:41164948-41165269 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 59 |
| Conread position: | 299-615 |
| Cow position: | chr16:27595328-27595005 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 58 |
| Conread position: | 300-615 |
| Cow position: | chr16:39645459-39645136 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 57 |
| Conread position: | 304-601 |
| Cow position: | chr16:20642314-20642007 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 53 |
| Conread position: | 313-615 |
| Cow position: | chr16:6945066-6944761 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 44 |
Show alignments to all cow chromosomes.