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Cow genome map

           
Conread name:
           
Pig2-13B24
        

               
Conread position:
               
1-312
               

               
Cow position:
               
chr1:11226589-11226281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 122
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr1:21131427-21131119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
123, 77
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr1:64678365-64678683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
185, 37
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr1:38278376-38278043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
189, 69
               

               
Conread position:
               
2-228
               

               
Cow position:
               
chr1:72813072-72813298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-230
               

               
Cow position:
               
chr1:88028948-88029174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
177, 84
               

               
Conread position:
               
2-233
               

               
Cow position:
               
chr1:9437889-9437657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
183, 46
               

               
Conread position:
               
2-233
               

               
Cow position:
               
chr1:58439379-58439158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
188, 39
               

               
Conread position:
               
2-233
               

               
Cow position:
               
chr1:72304712-72304479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
188, 20
               

               
Conread position:
               
2-233
               

               
Cow position:
               
chr1:99614109-99614343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
188, 103
               

               
Conread position:
               
2-235
               

               
Cow position:
               
chr1:7583385-7583617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
188, 28
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr1:96018929-96019160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
2-243
               

               
Cow position:
               
chr1:29792012-29791764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
2-245
               

               
Cow position:
               
chr1:41093209-41092964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
188, 46
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chr1:30066294-30066539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
95, 183
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chr1:55020144-55020387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
95, 123
               

               
Conread position:
               
2-251
               

               
Cow position:
               
chr1:57957202-57956948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr1:68854839-68855080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr1:65144815-65144542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr1:15028334-15028600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
95, 39
               

               
Conread position:
               
2-272
               

               
Cow position:
               
chr1:6760360-6760094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
208, 121
               

               
Conread position:
               
2-286
               

               
Cow position:
               
chr1:67014043-67014326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
190, 37
               

               
Conread position:
               
2-289
               

               
Cow position:
               
chr1:22826824-22827108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 70
               

               
Conread position:
               
2-300
               

               
Cow position:
               
chr1:100450535-100450229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
2-302
               

               
Cow position:
               
chr1:4026845-4027146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 77
               

               
Conread position:
               
2-302
               

               
Cow position:
               
chr1:36613618-36613321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 233
               

               
Conread position:
               
2-302
               

               
Cow position:
               
chr1:44136794-44136512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
201, 84
               

               
Conread position:
               
2-302
               

               
Cow position:
               
chr1:80336593-80336291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 240
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr1:68253248-68253550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 233
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr1:68276064-68276374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 124
               

               
Conread position:
               
2-311
               

               
Cow position:
               
chr1:58889636-58889329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
186, 43
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chr1:14528543-14528232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
182, 236
               

               
Conread position:
               
2-315
               

               
Cow position:
               
chr1:21460527-21460836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 105
               

               
Conread position:
               
2-315
               

               
Cow position:
               
chr1:43285545-43285238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
119, 42
               

               
Conread position:
               
2-315
               

               
Cow position:
               
chr1:102350112-102349787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
83, 247
               

               
Conread position:
               
2-316
               

               
Cow position:
               
chr1:24235861-24235551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 122
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chr1:3340587-3340904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
72, 209
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chr1:44125992-44125678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
95, 215
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chr1:93499280-93499592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 25
               

               
Conread position:
               
2-318
               

               
Cow position:
               
chr1:64251408-64251084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 246
               

               
Conread position:
               
2-318
               

               
Cow position:
               
chr1:72012146-72011838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 21
               

               
Conread position:
               
2-318
               

               
Cow position:
               
chr1:85028618-85028922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 121
               

               
Conread position:
               
2-318
               

               
Cow position:
               
chr1:100771077-100770779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 76
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr1:36874675-36874984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 82
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr1:36997854-36998162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 125
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr1:42874290-42873984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 233
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr1:50634754-50634430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
79, 52
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr1:53397641-53397956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 240
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr1:53424849-53425147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 81
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr1:61005905-61005588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 77
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr1:61350810-61351116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
175, 69
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr1:68818152-68817828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 137
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr1:76020023-76019725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 123
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr1:80764895-80764567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
52, 243
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr1:94226891-94226584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 230
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr1:100705793-100706104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 45
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr1:6795275-6794951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
39, 44
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr1:10719833-10719507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
83, 240
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr1:20002595-20002263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
95, 56
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr1:44769452-44769138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 95
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr1:45007127-45007438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 26
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr1:45289214-45288898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 81
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr1:53495119-53495439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 39
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr1:53520569-53520886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 84
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr1:69941308-69940993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 70
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr1:78795096-78794768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
73, 139
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr1:82504624-82504950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 121
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr1:90640689-90641005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 46
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr1:8280-8591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
196, 40
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr1:25183780-25184106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 267
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr1:26896166-26895852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 30
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr1:27495155-27495460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
93, 51
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr1:69695349-69695017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 70
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr1:81180328-81179997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 239
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr1:87216109-87216433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
85, 51
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr1:96963976-96964294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 229
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr1:100551619-100551944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
83, 239
               

               
Conread position:
               
2-326
               

               
Cow position:
               
chr1:46218238-46218550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 232
               

               
Conread position:
               
2-326
               

               
Cow position:
               
chr1:51968127-51968440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 128
               

               
Conread position:
               
2-326
               

               
Cow position:
               
chr1:58419581-58419914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
84, 329
               

               
Conread position:
               
2-332
               

               
Cow position:
               
chr1:19145271-19144941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
81, 45
               

               
Conread position:
               
2-333
               

               
Cow position:
               
chr1:9444183-9443863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
175, 97
               

               
Conread position:
               
2-333
               

               
Cow position:
               
chr1:34159492-34159819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 76
               

               
Conread position:
               
2-334
               

               
Cow position:
               
chr1:61724363-61724038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 47
               

               
Conread position:
               
2-335
               

               
Cow position:
               
chr1:66356052-66355729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 125
               

               
Conread position:
               
2-337
               

               
Cow position:
               
chr1:26702540-26702217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 82
               

               
Conread position:
               
2-337
               

               
Cow position:
               
chr1:55163582-55163905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 70
               

               
Conread position:
               
2-337
               

               
Cow position:
               
chr1:71045408-71045741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 125
               

               
Conread position:
               
2-337
               

               
Cow position:
               
chr1:79002296-79001951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 82
               

               
Conread position:
               
2-337
               

               
Cow position:
               
chr1:98577136-98577479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
119, 82
               

               
Conread position:
               
2-338
               

               
Cow position:
               
chr1:57247090-57247421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
65, 36
               

               
Conread position:
               
2-339
               

               
Cow position:
               
chr1:22728706-22729040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 30
               

               
Conread position:
               
2-339
               

               
Cow position:
               
chr1:41735961-41735635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
188, 66
               

               
Conread position:
               
2-339
               

               
Cow position:
               
chr1:80869763-80870109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
2-339
               

               
Cow position:
               
chr1:95499838-95499503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 121
               

               
Conread position:
               
2-340
               

               
Cow position:
               
chr1:20001090-20000760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
86, 17
               

               
Conread position:
               
2-340
               

               
Cow position:
               
chr1:21786980-21787321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 205
               

               
Conread position:
               
2-341
               

               
Cow position:
               
chr1:63503998-63504322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
182, 92
               

               
Conread position:
               
2-343
               

               
Cow position:
               
chr1:89349639-89349957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
2-343
               

               
Cow position:
               
chr1:91039502-91039180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
2-344
               

               
Cow position:
               
chr1:48105779-48105437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 235
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr1:1877684-1878022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 37
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr1:11914215-11913885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 88
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr1:20204682-20205024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 244
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr1:41004710-41004366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 135
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr1:52039294-52039632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 121
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr1:71946707-71946376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 48
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr1:81290178-81290501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
169, 70
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr1:82936927-82936603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 231
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr1:90868781-90868447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 227
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr1:91800941-91800605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 31
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr1:98551377-98551714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 69
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr1:99136773-99136435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 125
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr1:101007950-101007626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
244, 65
               

               
Conread position:
               
2-346
               

               
Cow position:
               
chr1:1403806-1403486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
2-346
               

               
Cow position:
               
chr1:5162407-5162048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
32, 244
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr1:51980885-51981183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 236
               

               
Conread position:
               
3-319
               

               
Cow position:
               
chr1:101551115-101551426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 236
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr1:1801805-1802127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 69
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr1:77620204-77620540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 251
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr1:91817113-91816777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 79
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chr1:57541839-57541619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
181, 90
               

               
Conread position:
               
5-239
               

               
Cow position:
               
chr1:73522476-73522242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
73, 36
               

               
Conread position:
               
5-251
               

               
Cow position:
               
chr1:32360472-32360232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
172, 48
               

               
Conread position:
               
5-251
               

               
Cow position:
               
chr1:101713775-101714032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
92, 52
               

               
Conread position:
               
5-299
               

               
Cow position:
               
chr1:31414305-31414010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 125
               

               
Conread position:
               
5-311
               

               
Cow position:
               
chr1:67821558-67821248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 222
               

               
Conread position:
               
5-312
               

               
Cow position:
               
chr1:100400538-100400232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 74
               

               
Conread position:
               
5-317
               

               
Cow position:
               
chr1:3137586-3137898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 143
               

               
Conread position:
               
5-322
               

               
Cow position:
               
chr1:74822110-74822421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 200
               

               
Conread position:
               
5-322
               

               
Cow position:
               
chr1:78184367-78184662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
5-323
               

               
Cow position:
               
chr1:39069298-39068981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 233
               

               
Conread position:
               
5-323
               

               
Cow position:
               
chr1:55135503-55135807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
185, 67
               

               
Conread position:
               
5-323
               

               
Cow position:
               
chr1:61661652-61661321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 39
               

               
Conread position:
               
5-323
               

               
Cow position:
               
chr1:69539357-69539672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
5-323
               

               
Cow position:
               
chr1:77462026-77462335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 49
               

               
Conread position:
               
5-324
               

               
Cow position:
               
chr1:53374094-53374407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 213
               

               
Conread position:
               
5-331
               

               
Cow position:
               
chr1:16856013-16855714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
179, 6
               

               
Conread position:
               
5-334
               

               
Cow position:
               
chr1:95215516-95215196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 42
               

               
Conread position:
               
5-340
               

               
Cow position:
               
chr1:79844129-79844458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 118
               

               
Conread position:
               
6-235
               

               
Cow position:
               
chr1:88338358-88338593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 117
               

               
Conread position:
               
6-241
               

               
Cow position:
               
chr1:9512452-9512228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
6-242
               

               
Cow position:
               
chr1:16997740-16997498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
82, 73
               

               
Conread position:
               
6-242
               

               
Cow position:
               
chr1:89840925-89841165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
178, 88
               

               
Conread position:
               
6-245
               

               
Cow position:
               
chr1:57743332-57743104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
6-246
               

               
Cow position:
               
chr1:14561290-14561039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
6-251
               

               
Cow position:
               
chr1:67406311-67406554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
119, 41
               

               
Conread position:
               
6-252
               

               
Cow position:
               
chr1:52863358-52863106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
71, 113
               

               
Conread position:
               
6-272
               

               
Cow position:
               
chr1:53208034-53207762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
6-274
               

               
Cow position:
               
chr1:25119358-25119085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
98, 105
               

               
Conread position:
               
6-276
               

               
Cow position:
               
chr1:101792435-101792162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
118, 66
               

               
Conread position:
               
6-287
               

               
Cow position:
               
chr1:63596398-63596115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 35
               

               
Conread position:
               
6-301
               

               
Cow position:
               
chr1:22628978-22628685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 167
               

               
Conread position:
               
6-301
               

               
Cow position:
               
chr1:42256849-42256550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 234
               

               
Conread position:
               
6-305
               

               
Cow position:
               
chr1:54732782-54732511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
6-307
               

               
Cow position:
               
chr1:57305492-57305790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 240
               

               
Conread position:
               
6-308
               

               
Cow position:
               
chr1:31765733-31765427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 33
               

               
Conread position:
               
6-308
               

               
Cow position:
               
chr1:71325586-71325288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 227
               

               
Conread position:
               
6-308
               

               
Cow position:
               
chr1:78091693-78091995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 106
               

               
Conread position:
               
6-308
               

               
Cow position:
               
chr1:82861434-82861741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 234
               

               
Conread position:
               
6-309
               

               
Cow position:
               
chr1:2075666-2075379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
6-310
               

               
Cow position:
               
chr1:43380362-43380065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 65
               

               
Conread position:
               
6-312
               

               
Cow position:
               
chr1:3035328-3035029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
60, 12
               

               
Conread position:
               
6-316
               

               
Cow position:
               
chr1:6321865-6322172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
84, 134
               

               
Conread position:
               
6-316
               

               
Cow position:
               
chr1:31934168-31934480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 233
               

               
Conread position:
               
6-318
               

               
Cow position:
               
chr1:54258233-54258532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
6-318
               

               
Cow position:
               
chr1:101634366-101634672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
176, 62
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chr1:22467589-22467903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 231
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chr1:74939866-74940171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
197, 58
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chr1:101822836-101822531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 109
               

               
Conread position:
               
6-322
               

               
Cow position:
               
chr1:11854029-11853711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
184, 242
               

               
Conread position:
               
6-322
               

               
Cow position:
               
chr1:61392132-61391815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 119
               

               
Conread position:
               
6-323
               

               
Cow position:
               
chr1:15050023-15050325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
6-323
               

               
Cow position:
               
chr1:48444517-48444218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
309, 66
               

               
Conread position:
               
6-323
               

               
Cow position:
               
chr1:61725452-61725141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 233
               

               
Conread position:
               
6-323
               

               
Cow position:
               
chr1:63391111-63390796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 117
               

               
Conread position:
               
6-324
               

               
Cow position:
               
chr1:31348771-31348465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 72
               

               
Conread position:
               
6-324
               

               
Cow position:
               
chr1:53308731-53308419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 117
               

               
Conread position:
               
6-324
               

               
Cow position:
               
chr1:60032941-60032623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 131
               

               
Conread position:
               
6-324
               

               
Cow position:
               
chr1:86113752-86113429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 166
               

               
Conread position:
               
6-326
               

               
Cow position:
               
chr1:15311529-15311847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 227
               

               
Conread position:
               
6-326
               

               
Cow position:
               
chr1:79590761-79591084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 233
               

               
Conread position:
               
6-326
               

               
Cow position:
               
chr1:83982714-83982392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 12
               

               
Conread position:
               
6-331
               

               
Cow position:
               
chr1:102647608-102647291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 225
               

               
Conread position:
               
6-332
               

               
Cow position:
               
chr1:31341393-31341065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
6-332
               

               
Cow position:
               
chr1:42053664-42053346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 187
               

               
Conread position:
               
6-334
               

               
Cow position:
               
chr1:72035268-72034938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 143
               

               
Conread position:
               
6-335
               

               
Cow position:
               
chr1:3323515-3323852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 82
               

               
Conread position:
               
6-335
               

               
Cow position:
               
chr1:81228669-81228355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 12
               

               
Conread position:
               
6-337
               

               
Cow position:
               
chr1:4032311-4032618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 60
               

               
Conread position:
               
6-337
               

               
Cow position:
               
chr1:4374677-4374351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 117
               

               
Conread position:
               
6-337
               

               
Cow position:
               
chr1:78783207-78783534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 229
               

               
Conread position:
               
6-343
               

               
Cow position:
               
chr1:41696722-41697050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 90
               

               
Conread position:
               
6-343
               

               
Cow position:
               
chr1:95176596-95176926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 233
               

               
Conread position:
               
6-345
               

               
Cow position:
               
chr1:41181503-41181839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 38
               

               
Conread position:
               
6-345
               

               
Cow position:
               
chr1:76223030-76222694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 228
               

               
Conread position:
               
6-345
               

               
Cow position:
               
chr1:84255415-84255756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 42
               

               
Conread position:
               
7-238
               

               
Cow position:
               
chr1:88911233-88910993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
95, 34
               

               
Conread position:
               
7-245
               

               
Cow position:
               
chr1:8160933-8160693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
185, 34
               

               
Conread position:
               
7-250
               

               
Cow position:
               
chr1:72181503-72181742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
183, 61
               

               
Conread position:
               
7-315
               

               
Cow position:
               
chr1:20125273-20125581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 80
               

               
Conread position:
               
7-319
               

               
Cow position:
               
chr1:11728855-11729152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
175, 102
               

               
Conread position:
               
7-319
               

               
Cow position:
               
chr1:55357618-55357314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 83
               

               
Conread position:
               
7-319
               

               
Cow position:
               
chr1:68951305-68951598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
7-319
               

               
Cow position:
               
chr1:85361517-85361831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 232
               

               
Conread position:
               
7-322
               

               
Cow position:
               
chr1:91066486-91066179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
7-323
               

               
Cow position:
               
chr1:12222943-12222629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 226
               

               
Conread position:
               
7-333
               

               
Cow position:
               
chr1:82884723-82884404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 116
               

               
Conread position:
               
7-334
               

               
Cow position:
               
chr1:72069164-72068852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 24
               

               
Conread position:
               
7-335
               

               
Cow position:
               
chr1:16973189-16972855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
42, 66
               

               
Conread position:
               
7-335
               

               
Cow position:
               
chr1:73995352-73995682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
183, 56
               

               
Conread position:
               
7-339
               

               
Cow position:
               
chr1:20384963-20384627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 233
               

               
Conread position:
               
7-340
               

               
Cow position:
               
chr1:8532552-8532220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 142
               

               
Conread position:
               
7-342
               

               
Cow position:
               
chr1:81913487-81913160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 65
               

               
Conread position:
               
8-235
               

               
Cow position:
               
chr1:90297830-90298061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
182, 41
               

               
Conread position:
               
8-285
               

               
Cow position:
               
chr1:33716883-33717165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
80, 232
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chr1:52753503-52753225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 227
               

               
Conread position:
               
8-295
               

               
Cow position:
               
chr1:52496439-52496730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 241
               

               
Conread position:
               
8-302
               

               
Cow position:
               
chr1:89742349-89742042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
8-316
               

               
Cow position:
               
chr1:98562823-98563130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 118
               

               
Conread position:
               
8-317
               

               
Cow position:
               
chr1:11772418-11772106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 231
               

               
Conread position:
               
8-318
               

               
Cow position:
               
chr1:69264485-69264780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 115
               

               
Conread position:
               
8-319
               

               
Cow position:
               
chr1:10778236-10778536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 116
               

               
Conread position:
               
8-319
               

               
Cow position:
               
chr1:30034212-30034505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
8-319
               

               
Cow position:
               
chr1:83082667-83082973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
11, 95
               

               
Conread position:
               
8-322
               

               
Cow position:
               
chr1:101547374-101547060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
182, 27
               

               
Conread position:
               
8-322
               

               
Cow position:
               
chr1:101915832-101916146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
179, 116
               

               
Conread position:
               
8-324
               

               
Cow position:
               
chr1:23634234-23633935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 64
               

               
Conread position:
               
9-280
               

               
Cow position:
               
chr1:43893592-43893857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 115
               

               
Conread position:
               
9-302
               

               
Cow position:
               
chr1:31646878-31647163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
181, 195
               

               
Conread position:
               
9-315
               

               
Cow position:
               
chr1:53594989-53595287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 0
               

               
Conread position:
               
9-319
               

               
Cow position:
               
chr1:54199716-54199411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 115
               

               
Conread position:
               
9-345
               

               
Cow position:
               
chr1:43352985-43352660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 104
               

               
Conread position:
               
10-232
               

               
Cow position:
               
chr1:8659313-8659542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
10-322
               

               
Cow position:
               
chr1:81356038-81355735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 113
               

               
Conread position:
               
10-344
               

               
Cow position:
               
chr1:12596239-12595908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 144
               

               
Conread position:
               
11-324
               

               
Cow position:
               
chr1:5873307-5872996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 116
               

               
Conread position:
               
11-344
               

               
Cow position:
               
chr1:61564460-61564792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 61
               

               
Conread position:
               
12-317
               

               
Cow position:
               
chr1:7350205-7350511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 192
               

               
Conread position:
               
14-323
               

               
Cow position:
               
chr1:89342320-89342021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
176, 100
               

               
Conread position:
               
16-235
               

               
Cow position:
               
chr1:91051988-91051768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
128, 66
               

               
Conread position:
               
17-345
               

               
Cow position:
               
chr1:57901065-57900747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 72
               

               
Conread position:
               
18-229
               

               
Cow position:
               
chr1:61534696-61534480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
79, 107
               

               
Conread position:
               
18-280
               

               
Cow position:
               
chr1:24202063-24201814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 67
               

               
Conread position:
               
18-317
               

               
Cow position:
               
chr1:4589808-4589505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
158, 206
               

               
Conread position:
               
18-319
               

               
Cow position:
               
chr1:15307712-15308004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
166, 29
               

               
Conread position:
               
18-319
               

               
Cow position:
               
chr1:99642690-99642395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
161, 51
               

               
Conread position:
               
18-322
               

               
Cow position:
               
chr1:39418445-39418147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 107
               

               
Conread position:
               
18-326
               

               
Cow position:
               
chr1:28176687-28176986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
163, 54
               

               
Conread position:
               
18-332
               

               
Cow position:
               
chr1:94876011-94875692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
29, 114
               

               
Conread position:
               
18-335
               

               
Cow position:
               
chr1:76851058-76850743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
31, 114
               

               
Conread position:
               
19-315
               

               
Cow position:
               
chr1:23969361-23969071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 76
               

               
Conread position:
               
19-318
               

               
Cow position:
               
chr1:57639836-57639547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
171, 35
               

               
Conread position:
               
19-319
               

               
Cow position:
               
chr1:732251-731971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 165
               

               
Conread position:
               
19-322
               

               
Cow position:
               
chr1:80973949-80973632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
66, 224
               

               
Conread position:
               
19-323
               

               
Cow position:
               
chr1:81859553-81859253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 104
               

               
Conread position:
               
19-337
               

               
Cow position:
               
chr1:100740961-100741275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
68, 60
               

               
Conread position:
               
20-252
               

               
Cow position:
               
chr1:39718688-39718929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
63, 34
               

               
Conread position:
               
20-315
               

               
Cow position:
               
chr1:102756746-102756462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
82, 105
               

               
Conread position:
               
20-316
               

               
Cow position:
               
chr1:84282736-84283042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 208
               

               
Conread position:
               
20-323
               

               
Cow position:
               
chr1:21934504-21934201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
92, 38
               

               
Conread position:
               
20-333
               

               
Cow position:
               
chr1:84240585-84240876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 44
               

               
Conread position:
               
20-337
               

               
Cow position:
               
chr1:44164755-44165072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 63
               

               
Conread position:
               
20-344
               

               
Cow position:
               
chr1:73960375-73960696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 220
               

               
Conread position:
               
21-318
               

               
Cow position:
               
chr1:19465735-19466026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
66, 178
               

               
Conread position:
               
22-337
               

               
Cow position:
               
chr1:35162081-35162396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 103
               

               
Conread position:
               
22-337
               

               
Cow position:
               
chr1:85596623-85596930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 91
               

               
Conread position:
               
23-326
               

               
Cow position:
               
chr1:63435125-63434828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 101
               

               
Conread position:
               
25-233
               

               
Cow position:
               
chr1:81579439-81579658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
25-233
               

               
Cow position:
               
chr1:99105206-99104992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
72, 102
               

               
Conread position:
               
25-312
               

               
Cow position:
               
chr1:80988029-80988309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 47
               

               
Conread position:
               
26-236
               

               
Cow position:
               
chr1:52564106-52563901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 47
               

               
Conread position:
               
26-343
               

               
Cow position:
               
chr1:12464972-12464672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
164, 70
               

               
Conread position:
               
27-294
               

               
Cow position:
               
chr1:69445056-69445310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
27-344
               

               
Cow position:
               
chr1:41056366-41056671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 126
               

               
Conread position:
               
30-308
               

               
Cow position:
               
chr1:4573218-4573481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
160, 53
               

               
Conread position:
               
30-312
               

               
Cow position:
               
chr1:21577492-21577773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
155, 53
               

               
Conread position:
               
30-322
               

               
Cow position:
               
chr1:53613512-53613222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 78
               

               
Conread position:
               
31-345
               

               
Cow position:
               
chr1:73561963-73561653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 73
               

               
Conread position:
               
31-345
               

               
Cow position:
               
chr1:88652317-88652625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 92
               

               
Conread position:
               
32-326
               

               
Cow position:
               
chr1:79663977-79663691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 65
               

               
Conread position:
               
32-337
               

               
Cow position:
               
chr1:98360727-98360410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 286
               

               
Conread position:
               
33-245
               

               
Cow position:
               
chr1:61304369-61304585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
34-322
               

               
Cow position:
               
chr1:18937144-18936861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 66
               

               
Conread position:
               
36-319
               

               
Cow position:
               
chr1:49795691-49795971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
76, 178
               

               
Conread position:
               
36-324
               

               
Cow position:
               
chr1:68845789-68845511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 48
               

               
Conread position:
               
40-345
               

               
Cow position:
               
chr1:666055-666360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 209
               

               
Conread position:
               
41-319
               

               
Cow position:
               
chr1:22448888-22448616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 83
               

               
Conread position:
               
43-326
               

               
Cow position:
               
chr1:47008730-47009007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
70, 34
               

               
Conread position:
               
43-326
               

               
Cow position:
               
chr1:71748306-71748032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 6
               

               
Conread position:
               
44-324
               

               
Cow position:
               
chr1:33811633-33811903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
47-337
               

               
Cow position:
               
chr1:87888108-87888386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
171, 25
               

               
Conread position:
               
48-340
               

               
Cow position:
               
chr1:68217657-68217372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 180
               

               
Conread position:
               
50-301
               

               
Cow position:
               
chr1:24528892-24528655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
51-319
               

               
Cow position:
               
chr1:81472585-81472844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
54-336
               

               
Cow position:
               
chr1:32341497-32341221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
130, 10
               

               
Conread position:
               
55-338
               

               
Cow position:
               
chr1:91142445-91142169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
43, 70
               

               
Conread position:
               
57-235
               

               
Cow position:
               
chr1:3076677-3076503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
133, 38
               

               
Conread position:
               
57-316
               

               
Cow position:
               
chr1:25383374-25383631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
45, 20
               

               
Conread position:
               
57-316
               

               
Cow position:
               
chr1:29627203-29626944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
143, 181
               

               
Conread position:
               
57-323
               

               
Cow position:
               
chr1:1991718-1991447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 152
               

               
Conread position:
               
57-337
               

               
Cow position:
               
chr1:3752231-3751952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 193
               

               
Conread position:
               
57-340
               

               
Cow position:
               
chr1:26688766-26688487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
59-322
               

               
Cow position:
               
chr1:31871133-31871399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 181
               

               
Conread position:
               
60-247
               

               
Cow position:
               
chr1:48083269-48083462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
66, 141
               

               
Conread position:
               
60-317
               

               
Cow position:
               
chr1:34000620-34000881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 190
               

               
Conread position:
               
60-337
               

               
Cow position:
               
chr1:4027576-4027856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 179
               

               
Conread position:
               
61-245
               

               
Cow position:
               
chr1:86709303-86709111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
61-252
               

               
Cow position:
               
chr1:24225777-24225592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
123, 22
               

               
Conread position:
               
61-315
               

               
Cow position:
               
chr1:1956614-1956367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
28, 176
               

               
Conread position:
               
61-336
               

               
Cow position:
               
chr1:97611934-97611675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
117, 14
               

               
Conread position:
               
62-233
               

               
Cow position:
               
chr1:3872570-3872743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
128, 33
               

               
Conread position:
               
62-299
               

               
Cow position:
               
chr1:72286332-72286106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
62-308
               

               
Cow position:
               
chr1:634908-635153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 173
               

               
Conread position:
               
62-317
               

               
Cow position:
               
chr1:46940142-46939890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 10
               

               
Conread position:
               
63-346
               

               
Cow position:
               
chr1:60907079-60907371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
106, 181
               

               
Conread position:
               
64-318
               

               
Cow position:
               
chr1:95327436-95327181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
15, 211
               

               
Conread position:
               
65-311
               

               
Cow position:
               
chr1:42968594-42968352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
125, 30
               

               
Conread position:
               
66-345
               

               
Cow position:
               
chr1:40599773-40600039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
260, 56
               

               
Conread position:
               
68-337
               

               
Cow position:
               
chr1:33719837-33720108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
122, 55
               

               
Conread position:
               
69-285
               

               
Cow position:
               
chr1:32631193-32631404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
9, 37
               

               
Conread position:
               
69-294
               

               
Cow position:
               
chr1:84786495-84786721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
121, 54
               

               
Conread position:
               
71-322
               

               
Cow position:
               
chr1:29901230-29901001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
72-287
               

               
Cow position:
               
chr1:55686492-55686278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
118, 66
               

               
Conread position:
               
72-319
               

               
Cow position:
               
chr1:89510205-89509953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
118, 51
               

               
Conread position:
               
75-233
               

               
Cow position:
               
chr1:61742238-61742076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
76-323
               

               
Cow position:
               
chr1:49433535-49433286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
24, 53
               

               
Conread position:
               
76-324
               

               
Cow position:
               
chr1:99609098-99609345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
114, 11
               

               
Conread position:
               
76-335
               

               
Cow position:
               
chr1:99095096-99095348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
170, 19
               

               
Conread position:
               
78-324
               

               
Cow position:
               
chr1:102826080-102825842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
112, 48
               

               
Conread position:
               
78-326
               

               
Cow position:
               
chr1:54478056-54478302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
39, 6
               

               
Conread position:
               
79-336
               

               
Cow position:
               
chr1:21835681-21835930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
16, 5
               

               
Conread position:
               
82-318
               

               
Cow position:
               
chr1:37646266-37646032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
9, 104
               

               
Conread position:
               
82-319
               

               
Cow position:
               
chr1:90423351-90423113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 134
               

               
Conread position:
               
83-286
               

               
Cow position:
               
chr1:52488220-52488023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
107, 41
               

               
Conread position:
               
83-322
               

               
Cow position:
               
chr1:52506806-52506581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
83-337
               

               
Cow position:
               
chr1:50679547-50679293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
107, 13
               

               
Conread position:
               
85-333
               

               
Cow position:
               
chr1:3776874-3776634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 161
               

               
Conread position:
               
86-239
               

               
Cow position:
               
chr1:82370492-82370648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
53, 64
               

               
Conread position:
               
86-251
               

               
Cow position:
               
chr1:52510502-52510334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
100, 148
               

               
Conread position:
               
86-276
               

               
Cow position:
               
chr1:52774780-52774584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
86-280
               

               
Cow position:
               
chr1:30882574-30882380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
98, 37
               

               
Conread position:
               
86-286
               

               
Cow position:
               
chr1:13455884-13456083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
106, 162
               

               
Conread position:
               
86-299
               

               
Cow position:
               
chr1:31348167-31347965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
86-308
               

               
Cow position:
               
chr1:60707144-60707363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
96, 150
               

               
Conread position:
               
86-312
               

               
Cow position:
               
chr1:90864559-90864329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
104, 153
               

               
Conread position:
               
86-318
               

               
Cow position:
               
chr1:51628761-51628529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
91, 153
               

               
Conread position:
               
86-318
               

               
Cow position:
               
chr1:56748331-56748564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
100, 37
               

               
Conread position:
               
86-318
               

               
Cow position:
               
chr1:81868986-81868758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
58, 150
               

               
Conread position:
               
86-319
               

               
Cow position:
               
chr1:45535443-45535676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
104, 44
               

               
Conread position:
               
86-319
               

               
Cow position:
               
chr1:76470400-76470626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
86-322
               

               
Cow position:
               
chr1:93110882-93110647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 12
               

               
Conread position:
               
86-323
               

               
Cow position:
               
chr1:6941207-6941438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
104, 37
               

               
Conread position:
               
86-323
               

               
Cow position:
               
chr1:6958620-6958851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
104, 37
               

               
Conread position:
               
86-323
               

               
Cow position:
               
chr1:57264245-57264021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
177, 37
               

               
Conread position:
               
86-326
               

               
Cow position:
               
chr1:63905733-63905495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
104, 82
               

               
Conread position:
               
86-326
               

               
Cow position:
               
chr1:80555438-80555216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
189, 36
               

               
Conread position:
               
86-333
               

               
Cow position:
               
chr1:56408354-56408602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
104, 153
               

               
Conread position:
               
86-334
               

               
Cow position:
               
chr1:70534193-70533957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
91, 149
               

               
Conread position:
               
86-335
               

               
Cow position:
               
chr1:74947376-74947133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
229, 78
               

               
Conread position:
               
86-336
               

               
Cow position:
               
chr1:85783267-85783512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
98, 37
               

               
Conread position:
               
86-337
               

               
Cow position:
               
chr1:34856888-34856642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
171, 100
               

               
Conread position:
               
86-339
               

               
Cow position:
               
chr1:74084448-74084205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
86-340
               

               
Cow position:
               
chr1:6165992-6166232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
38, 96
               

               
Conread position:
               
86-345
               

               
Cow position:
               
chr1:197261-197011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
104, 47
               

               
Conread position:
               
86-345
               

               
Cow position:
               
chr1:37322265-37322004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 153
               

               
Conread position:
               
86-345
               

               
Cow position:
               
chr1:57635208-57635456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
130, 37
               

               
Conread position:
               
87-233
               

               
Cow position:
               
chr1:4619126-4618973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
96, 9
               

               
Conread position:
               
87-240
               

               
Cow position:
               
chr1:39249053-39248896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
79, 123
               

               
Conread position:
               
87-251
               

               
Cow position:
               
chr1:39183073-39182910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
151, 39
               

               
Conread position:
               
87-274
               

               
Cow position:
               
chr1:72803496-72803300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
79, 9
               

               
Conread position:
               
87-279
               

               
Cow position:
               
chr1:13614977-13614782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
103, 75
               

               
Conread position:
               
87-314
               

               
Cow position:
               
chr1:41252661-41252441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
98, 157
               

               
Conread position:
               
87-315
               

               
Cow position:
               
chr1:20799610-20799852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
27, 161
               

               
Conread position:
               
87-315
               

               
Cow position:
               
chr1:56711877-56711652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
6, 36
               

               
Conread position:
               
87-316
               

               
Cow position:
               
chr1:16767343-16767115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
99, 158
               

               
Conread position:
               
87-322
               

               
Cow position:
               
chr1:38544705-38544490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
87-322
               

               
Cow position:
               
chr1:42555012-42555238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
225, 36
               

               
Conread position:
               
87-324
               

               
Cow position:
               
chr1:68619195-68618957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
30, 58
               

               
Conread position:
               
87-337
               

               
Cow position:
               
chr1:79165350-79165096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 154
               

               
Conread position:
               
87-340
               

               
Cow position:
               
chr1:4290900-4291151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
23, 30
               

               
Conread position:
               
87-340
               

               
Cow position:
               
chr1:82338043-82337791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
31, 65
               

               
Conread position:
               
87-345
               

               
Cow position:
               
chr1:56618934-56618656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
99, 15
               

               
Conread position:
               
88-322
               

               
Cow position:
               
chr1:22777810-22777571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 146
               

               
Conread position:
               
89-227
               

               
Cow position:
               
chr1:100761835-100761965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
89-314
               

               
Cow position:
               
chr1:97806536-97806754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
94, 66
               

               
Conread position:
               
89-315
               

               
Cow position:
               
chr1:1165344-1165567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
28, 176
               

               
Conread position:
               
89-322
               

               
Cow position:
               
chr1:53039955-53039727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
95, 52
               

               
Conread position:
               
89-323
               

               
Cow position:
               
chr1:6939895-6939663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
85, 146
               

               
Conread position:
               
89-323
               

               
Cow position:
               
chr1:45555106-45555338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
56, 33
               

               
Conread position:
               
89-323
               

               
Cow position:
               
chr1:68827161-68826930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 34
               

               
Conread position:
               
89-335
               

               
Cow position:
               
chr1:46839338-46839589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
76, 149
               

               
Conread position:
               
90-237
               

               
Cow position:
               
chr1:6240361-6240504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
100, 34
               

               
Conread position:
               
90-318
               

               
Cow position:
               
chr1:98708186-98708410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
8, 144
               

               
Conread position:
               
91-239
               

               
Cow position:
               
chr1:99118131-99118287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
91-299
               

               
Cow position:
               
chr1:72141310-72141514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
91-310
               

               
Cow position:
               
chr1:96713068-96712849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
99, 165
               

               
Conread position:
               
91-319
               

               
Cow position:
               
chr1:55146547-55146773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
99, 113
               

               
Conread position:
               
91-326
               

               
Cow position:
               
chr1:93810189-93810408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
198, 21
               

               
Conread position:
               
91-337
               

               
Cow position:
               
chr1:37707223-37706984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
99, 127
               

               
Conread position:
               
91-338
               

               
Cow position:
               
chr1:75744606-75744849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
99, 141
               

               
Conread position:
               
92-319
               

               
Cow position:
               
chr1:11770546-11770321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
97, 31
               

               
Conread position:
               
92-323
               

               
Cow position:
               
chr1:85411326-85411552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
17, 12
               

               
Conread position:
               
92-337
               

               
Cow position:
               
chr1:89485338-89485565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
50, 30
               

               
Conread position:
               
93-297
               

               
Cow position:
               
chr1:64160089-64160289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
111, 30
               

               
Conread position:
               
93-308
               

               
Cow position:
               
chr1:61246403-61246199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
93-314
               

               
Cow position:
               
chr1:81363742-81363956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
198, 30
               

               
Conread position:
               
93-319
               

               
Cow position:
               
chr1:78810784-78811008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
97, 34
               

               
Conread position:
               
93-324
               

               
Cow position:
               
chr1:56657789-56658008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
97, 31
               

               
Conread position:
               
93-344
               

               
Cow position:
               
chr1:14379782-14379539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
222, 67
               

               
Conread position:
               
94-323
               

               
Cow position:
               
chr1:25793691-25793460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
42, 146
               

               
Conread position:
               
96-234
               

               
Cow position:
               
chr1:95071737-95071878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
94, 27
               

               
Conread position:
               
96-239
               

               
Cow position:
               
chr1:94378783-94378929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
28, 76
               

               
Conread position:
               
96-259
               

               
Cow position:
               
chr1:4679884-4680048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
96-285
               

               
Cow position:
               
chr1:74013516-74013322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
96, 153
               

               
Conread position:
               
96-311
               

               
Cow position:
               
chr1:89729206-89729011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
12, 28
               

               
Conread position:
               
96-314
               

               
Cow position:
               
chr1:89395342-89395567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
22, 144
               

               
Conread position:
               
96-315
               

               
Cow position:
               
chr1:34685946-34686157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
94, 37
               

               
Conread position:
               
96-319
               

               
Cow position:
               
chr1:36931910-36932128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
88, 146
               

               
Conread position:
               
96-323
               

               
Cow position:
               
chr1:7143098-7142873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
90, 139
               

               
Conread position:
               
96-323
               

               
Cow position:
               
chr1:49131371-49131141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
94, 141
               

               
Conread position:
               
96-323
               

               
Cow position:
               
chr1:77657817-77658042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
108, 27
               

               
Conread position:
               
96-323
               

               
Cow position:
               
chr1:78791556-78791331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 138
               

               
Conread position:
               
96-335
               

               
Cow position:
               
chr1:81563484-81563723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
94, 55
               

               
Conread position:
               
96-346
               

               
Cow position:
               
chr1:24655711-24655960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
100, 35
               

               
Conread position:
               
97-312
               

               
Cow position:
               
chr1:70538355-70538571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
82, 149
               

               
Conread position:
               
97-316
               

               
Cow position:
               
chr1:75967188-75967399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
97-317
               

               
Cow position:
               
chr1:1185491-1185706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
91, 139
               

               
Conread position:
               
97-322
               

               
Cow position:
               
chr1:93528442-93528673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
78, 142
               

               
Conread position:
               
97-323
               

               
Cow position:
               
chr1:3924042-3923822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
89, 65
               

               
Conread position:
               
97-323
               

               
Cow position:
               
chr1:57396177-57395956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
25, 108
               

               
Conread position:
               
97-323
               

               
Cow position:
               
chr1:78857570-78857346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
87, 26
               

               
Conread position:
               
97-326
               

               
Cow position:
               
chr1:24534491-24534276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
97-337
               

               
Cow position:
               
chr1:52994776-52995010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
87, 26
               

               
Conread position:
               
97-345
               

               
Cow position:
               
chr1:47233723-47233484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
98-318
               

               
Cow position:
               
chr1:3244603-3244817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
76, 140
               

               
Conread position:
               
98-340
               

               
Cow position:
               
chr1:56477348-56477577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
90, 25
               

               
Conread position:
               
99-233
               

               
Cow position:
               
chr1:26159678-26159536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
99-302
               

               
Cow position:
               
chr1:51531527-51531720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
99-323
               

               
Cow position:
               
chr1:81277447-81277227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
100-253
               

               
Cow position:
               
chr1:32955009-32954853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
100-323
               

               
Cow position:
               
chr1:71119266-71119491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
76, 151
               

               
Conread position:
               
100-324
               

               
Cow position:
               
chr1:4293816-4294031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
19, 93
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr1:44506722-44506956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
6, 43
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr1:84239352-84239128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
100-344
               

               
Cow position:
               
chr1:6077649-6077894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
90, 104
               

               
Conread position:
               
101-323
               

               
Cow position:
               
chr1:56643833-56643615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
64, 136
               

               
Conread position:
               
101-333
               

               
Cow position:
               
chr1:51836327-51836555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
83, 132
               

               
Conread position:
               
102-233
               

               
Cow position:
               
chr1:43649777-43649651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
102-326
               

               
Cow position:
               
chr1:3962927-3962718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
103-233
               

               
Cow position:
               
chr1:62996253-62996386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
87, 20
               

               
Conread position:
               
103-333
               

               
Cow position:
               
chr1:95056813-95057038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
87, 132
               

               
Conread position:
               
104-322
               

               
Cow position:
               
chr1:24597411-24597631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
86, 100
               

               
Conread position:
               
104-322
               

               
Cow position:
               
chr1:64189261-64189471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
48, 127
               

               
Conread position:
               
104-326
               

               
Cow position:
               
chr1:7442744-7442962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
86, 26
               

               
Conread position:
               
104-345
               

               
Cow position:
               
chr1:94403975-94404208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
105-299
               

               
Cow position:
               
chr1:30504231-30504422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
115, 18
               

               
Conread position:
               
105-312
               

               
Cow position:
               
chr1:71079193-71078994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
87, 22
               

               
Conread position:
               
105-319
               

               
Cow position:
               
chr1:20287877-20288089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
84, 18
               

               
Conread position:
               
105-334
               

               
Cow position:
               
chr1:8869904-8869676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
60, 22
               

               
Conread position:
               
105-337
               

               
Cow position:
               
chr1:19885137-19885370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 141
               

               
Conread position:
               
105-340
               

               
Cow position:
               
chr1:51445639-51445873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
85, 128
               

               
Conread position:
               
105-345
               

               
Cow position:
               
chr1:25281916-25281663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
84, 165
               

               
Conread position:
               
105-346
               

               
Cow position:
               
chr1:70434752-70434994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 141
               

               
Conread position:
               
106-276
               

               
Cow position:
               
chr1:77891574-77891745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
18, 80
               

               
Conread position:
               
106-319
               

               
Cow position:
               
chr1:40531348-40531142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
106-319
               

               
Cow position:
               
chr1:52956019-52956224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
17, 87
               

               
Conread position:
               
106-319
               

               
Cow position:
               
chr1:76859833-76859624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 79
               

               
Conread position:
               
106-343
               

               
Cow position:
               
chr1:26729489-26729710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
98, 17
               

               
Conread position:
               
107-268
               

               
Cow position:
               
chr1:65637966-65638134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
72, 131
               

               
Conread position:
               
107-308
               

               
Cow position:
               
chr1:72103608-72103809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
36, 7
               

               
Conread position:
               
107-323
               

               
Cow position:
               
chr1:51769847-51770063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
83, 56
               

               
Conread position:
               
108-322
               

               
Cow position:
               
chr1:71818699-71818484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
95, 105
               

               
Conread position:
               
108-323
               

               
Cow position:
               
chr1:101812513-101812301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
8, 44
               

               
Conread position:
               
108-333
               

               
Cow position:
               
chr1:10655240-10655470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
82, 131
               

               
Conread position:
               
110-337
               

               
Cow position:
               
chr1:43358249-43358024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
69, 13
               

               
Conread position:
               
110-345
               

               
Cow position:
               
chr1:64804343-64804108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
80, 129
               

               
Conread position:
               
111-322
               

               
Cow position:
               
chr1:78809649-78809854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
93, 121
               

               
Conread position:
               
111-323
               

               
Cow position:
               
chr1:69415950-69415738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
51, 12
               

               
Conread position:
               
111-335
               

               
Cow position:
               
chr1:79278676-79278461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
79, 45
               

               
Conread position:
               
113-238
               

               
Cow position:
               
chr1:99543281-99543152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
113-293
               

               
Cow position:
               
chr1:3429741-3429564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 107
               

               
Conread position:
               
113-311
               

               
Cow position:
               
chr1:55229752-55229947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 122
               

               
Conread position:
               
113-323
               

               
Cow position:
               
chr1:51818709-51818915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
77, 120
               

               
Conread position:
               
113-326
               

               
Cow position:
               
chr1:1499932-1499715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
127, 24
               

               
Conread position:
               
113-337
               

               
Cow position:
               
chr1:64962887-64962681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
113-340
               

               
Cow position:
               
chr1:95050332-95050102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
77, 136
               

               
Conread position:
               
114-322
               

               
Cow position:
               
chr1:73761583-73761385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
114-337
               

               
Cow position:
               
chr1:43448055-43447842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
12, 92
               

               
Conread position:
               
115-315
               

               
Cow position:
               
chr1:55194694-55194497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
97, 70
               

               
Conread position:
               
116-312
               

               
Cow position:
               
chr1:89076865-89076665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
74, 41
               

               
Conread position:
               
116-322
               

               
Cow position:
               
chr1:49839278-49839479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
74, 119
               

               
Conread position:
               
116-336
               

               
Cow position:
               
chr1:56634869-56635084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
76, 88
               

               
Conread position:
               
116-337
               

               
Cow position:
               
chr1:31235161-31234945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
76, 123
               

               
Conread position:
               
116-345
               

               
Cow position:
               
chr1:55705483-55705252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
61, 123
               

               
Conread position:
               
117-312
               

               
Cow position:
               
chr1:100512367-100512563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
73, 118
               

               
Conread position:
               
117-340
               

               
Cow position:
               
chr1:57297263-57297467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
118-292
               

               
Cow position:
               
chr1:7186560-7186739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
70, 122
               

               
Conread position:
               
118-309
               

               
Cow position:
               
chr1:7449903-7450091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 116
               

               
Conread position:
               
118-312
               

               
Cow position:
               
chr1:26200993-26201183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
50, 112
               

               
Conread position:
               
118-316
               

               
Cow position:
               
chr1:49753705-49753896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
118-334
               

               
Cow position:
               
chr1:14981346-14981141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
54, 128
               

               
Conread position:
               
118-335
               

               
Cow position:
               
chr1:53540163-53540376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
62, 120
               

               
Conread position:
               
120-324
               

               
Cow position:
               
chr1:87072479-87072671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
123-337
               

               
Cow position:
               
chr1:34771726-34771517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
61, 119
               

               
Conread position:
               
125-323
               

               
Cow position:
               
chr1:7971210-7971390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
125-326
               

               
Cow position:
               
chr1:98461070-98461264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
60, 109
               

               
Conread position:
               
126-322
               

               
Cow position:
               
chr1:6305088-6304889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
51, 113
               

               
Conread position:
               
126-324
               

               
Cow position:
               
chr1:45673492-45673685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
85, 35
               

               
Conread position:
               
126-335
               

               
Cow position:
               
chr1:15333661-15333871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
59, 15
               

               
Conread position:
               
127-315
               

               
Cow position:
               
chr1:86504936-86504740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
47, 184
               

               
Conread position:
               
127-326
               

               
Cow position:
               
chr1:98558002-98557807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
56, 112
               

               
Conread position:
               
128-308
               

               
Cow position:
               
chr1:86484738-86484925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
62, 110
               

               
Conread position:
               
130-337
               

               
Cow position:
               
chr1:74956239-74956031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
60, 107
               

               
Conread position:
               
130-345
               

               
Cow position:
               
chr1:68995956-68996174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
60, 191
               

               
Conread position:
               
132-318
               

               
Cow position:
               
chr1:40482625-40482435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
114, 21
               

               
Conread position:
               
135-322
               

               
Cow position:
               
chr1:43872542-43872357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
136-300
               

               
Cow position:
               
chr1:75382782-75382946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
136-317
               

               
Cow position:
               
chr1:90976292-90976116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
136-319
               

               
Cow position:
               
chr1:95654925-95654743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
67, 140
               

               
Conread position:
               
136-346
               

               
Cow position:
               
chr1:78154934-78154728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
198, 83
               

               
Conread position:
               
138-322
               

               
Cow position:
               
chr1:98310854-98311042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
52, 111
               

               
Conread position:
               
140-308
               

               
Cow position:
               
chr1:32013751-32013916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
50, 94
               

               
Conread position:
               
140-319
               

               
Cow position:
               
chr1:4414413-4414237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 93
               

               
Conread position:
               
140-322
               

               
Cow position:
               
chr1:75141801-75141971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 47
               

               
Conread position:
               
143-286
               

               
Cow position:
               
chr1:9166975-9166831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
143-326
               

               
Cow position:
               
chr1:46030555-46030378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
143-334
               

               
Cow position:
               
chr1:28563771-28563584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
47, 92
               

               
Conread position:
               
144-313
               

               
Cow position:
               
chr1:43340824-43340647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
146-317
               

               
Cow position:
               
chr1:32001520-32001351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
100, 43
               

               
Conread position:
               
146-322
               

               
Cow position:
               
chr1:81470929-81471106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 58
               

               
Conread position:
               
146-345
               

               
Cow position:
               
chr1:82443656-82443460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
44, 97
               

               
Conread position:
               
148-337
               

               
Cow position:
               
chr1:9533977-9534162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
16, 56
               

               
Conread position:
               
150-337
               

               
Cow position:
               
chr1:6788485-6788297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
40, 54
               

               
Conread position:
               
150-342
               

               
Cow position:
               
chr1:51654215-51654404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
40, 93
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr1:83594000-83593838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
26, 85
               

               
Conread position:
               
154-309
               

               
Cow position:
               
chr1:25734662-25734829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
156-324
               

               
Cow position:
               
chr1:71227887-71228063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 98
               

               
Conread position:
               
156-329
               

               
Cow position:
               
chr1:49317683-49317516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
12, 19
               

               
Conread position:
               
157-322
               

               
Cow position:
               
chr1:54156929-54156760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
28, 96
               

               
Conread position:
               
157-345
               

               
Cow position:
               
chr1:43703226-43703403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
159-337
               

               
Cow position:
               
chr1:42398383-42398205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 76
               

               
Conread position:
               
161-326
               

               
Cow position:
               
chr1:68763866-68763706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 74
               

               
Conread position:
               
161-326
               

               
Cow position:
               
chr1:75933088-75933251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
159, 42
               

               
Conread position:
               
163-319
               

               
Cow position:
               
chr1:51684628-51684772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
163-319
               

               
Cow position:
               
chr1:81638224-81638375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 19
               

               
Conread position:
               
163-323
               

               
Cow position:
               
chr1:24778161-24778012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
163-324
               

               
Cow position:
               
chr1:65318399-65318550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
166-337
               

               
Cow position:
               
chr1:20667921-20667756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 76
               

               
Conread position:
               
168-317
               

               
Cow position:
               
chr1:32596276-32596427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 81
               

               
Conread position:
               
175-323
               

               
Cow position:
               
chr1:92926558-92926710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
186-336
               

               
Cow position:
               
chr1:87095386-87095241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
144, 45
               

               
Conread position:
               
189-328
               

               
Cow position:
               
chr1:41115867-41115735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
190-334
               

               
Cow position:
               
chr1:65909375-65909514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
133, 41
               

               
Conread position:
               
215-332
               

               
Cow position:
               
chr1:3352828-3352713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
31, 74
               
Show alignments to all cow chromosomes.