Non-Coding RNA Search

Cow genome map


           Conread name:
           Pig2-13B24
        

               Conread position:
               1-299
               

               Cow position:
               chrX:11581611-11581917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 53
               

               Conread position:
               1-338
               

               Cow position:
               chrX:30543606-30543279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               189, 108
               

               Conread position:
               2-206
               

               Cow position:
               chrX:12096570-12096367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               161
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               2-233
               

               Cow position:
               chrX:29049652-29049876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               2-234
               

               Cow position:
               chrX:8661438-8661675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               190, 133
               

               Conread position:
               2-236
               

               Cow position:
               chrX:3161339-3161099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               179
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               2-236
               

               Cow position:
               chrX:19290449-19290681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               172
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               188, 125
               

               Conread position:
               2-246
               

               Cow position:
               chrX:2300608-2300851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               183
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               96, 202
               

               Conread position:
               2-246
               

               Cow position:
               chrX:34009427-34009675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               125, 134
               

               Conread position:
               2-258
               

               Cow position:
               chrX:25283463-25283213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               2-278
               

               Cow position:
               chrX:42855088-42855365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 77
               

               Conread position:
               2-282
               

               Cow position:
               chrX:7382001-7382288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 39
               

               Conread position:
               2-282
               

               Cow position:
               chrX:45967839-45968114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               206
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               85, 80
               

               Conread position:
               2-292
               

               Cow position:
               chrX:4123512-4123802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-297
               

               Cow position:
               chrX:20801454-20801744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               206
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               29, 96
               

               Conread position:
               2-301
               

               Cow position:
               chrX:36692912-36693209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               217
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               163, 231
               

               Conread position:
               2-308
               

               Cow position:
               chrX:38967328-38967628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 61
               

               Conread position:
               2-309
               

               Cow position:
               chrX:38218395-38218689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               230
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               188, 70
               

               Conread position:
               2-310
               

               Cow position:
               chrX:37843397-37843703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 233
               

               Conread position:
               2-311
               

               Cow position:
               chrX:21063963-21064265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 164
               

               Conread position:
               2-311
               

               Cow position:
               chrX:42733542-42733845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               206
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               228, 0
               

               Conread position:
               2-312
               

               Cow position:
               chrX:40452536-40452225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 237
               

               Conread position:
               2-313
               

               Cow position:
               chrX:38007091-38006779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 237
               

               Conread position:
               2-314
               

               Cow position:
               chrX:33855563-33855248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 40
               

               Conread position:
               2-316
               

               Cow position:
               chrX:8899701-8900016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 303
               

               Conread position:
               2-316
               

               Cow position:
               chrX:13177780-13177480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               224
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               188, 52
               

               Conread position:
               2-316
               

               Cow position:
               chrX:26626008-26625688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 274
               

               Conread position:
               2-318
               

               Cow position:
               chrX:38094848-38094531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 121
               

               Conread position:
               2-319
               

               Cow position:
               chrX:11561820-11562148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               230
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               66, 139
               

               Conread position:
               2-319
               

               Cow position:
               chrX:11655755-11656083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 212
               

               Conread position:
               2-319
               

               Cow position:
               chrX:11674735-11675054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               79, 253
               

               Conread position:
               2-319
               

               Cow position:
               chrX:17964838-17964527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               183, 82
               

               Conread position:
               2-319
               

               Cow position:
               chrX:18695244-18694935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 202
               

               Conread position:
               2-319
               

               Cow position:
               chrX:34238397-34238706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 122
               

               Conread position:
               2-319
               

               Cow position:
               chrX:35388230-35387911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 238
               

               Conread position:
               2-319
               

               Cow position:
               chrX:40557999-40557690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 0
               

               Conread position:
               2-319
               

               Cow position:
               chrX:41403638-41403970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 248
               

               Conread position:
               2-319
               

               Cow position:
               chrX:41410186-41410518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 248
               

               Conread position:
               2-319
               

               Cow position:
               chrX:47054839-47054536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               224
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               124, 70
               

               Conread position:
               2-322
               

               Cow position:
               chrX:7645935-7646247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 231
               

               Conread position:
               2-322
               

               Cow position:
               chrX:14599213-14599526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 18
               

               Conread position:
               2-322
               

               Cow position:
               chrX:25232263-25232585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               229
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               80, 237
               

               Conread position:
               2-322
               

               Cow position:
               chrX:42462071-42461750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 237
               

               Conread position:
               2-322
               

               Cow position:
               chrX:47481477-47481796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 37
               

               Conread position:
               2-323
               

               Cow position:
               chrX:917693-917370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 123
               

               Conread position:
               2-323
               

               Cow position:
               chrX:2786869-2786563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               223
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               91, 112
               

               Conread position:
               2-323
               

               Cow position:
               chrX:4044181-4043865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 129
               

               Conread position:
               2-323
               

               Cow position:
               chrX:5017729-5017419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               2-323
               

               Cow position:
               chrX:10437974-10437673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 71
               

               Conread position:
               2-323
               

               Cow position:
               chrX:14974051-14973745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 49
               

               Conread position:
               2-323
               

               Cow position:
               chrX:31260954-31260627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 238
               

               Conread position:
               2-323
               

               Cow position:
               chrX:31443143-31442836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 42
               

               Conread position:
               2-323
               

               Cow position:
               chrX:34401675-34401993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 47
               

               Conread position:
               2-323
               

               Cow position:
               chrX:34502600-34502917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               196, 70
               

               Conread position:
               2-323
               

               Cow position:
               chrX:37489395-37489718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 241
               

               Conread position:
               2-323
               

               Cow position:
               chrX:38936376-38936692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 125
               

               Conread position:
               2-323
               

               Cow position:
               chrX:41743590-41743907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               194, 121
               

               Conread position:
               2-323
               

               Cow position:
               chrX:45113313-45113614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               2-324
               

               Cow position:
               chrX:7718533-7718850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 70
               

               Conread position:
               2-324
               

               Cow position:
               chrX:20340214-20339895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 174
               

               Conread position:
               2-324
               

               Cow position:
               chrX:35609663-35609985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 235
               

               Conread position:
               2-324
               

               Cow position:
               chrX:41198763-41199101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 249
               

               Conread position:
               2-324
               

               Cow position:
               chrX:42994291-42994609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 163
               

               Conread position:
               2-325
               

               Cow position:
               chrX:45501825-45502142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 237
               

               Conread position:
               2-326
               

               Cow position:
               chrX:5638491-5638170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 67
               

               Conread position:
               2-326
               

               Cow position:
               chrX:11082937-11082625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 122
               

               Conread position:
               2-326
               

               Cow position:
               chrX:11806339-11806015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               234
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               169, 39
               

               Conread position:
               2-326
               

               Cow position:
               chrX:37232088-37232411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 71
               

               Conread position:
               2-326
               

               Cow position:
               chrX:42470260-42469948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               252, 0
               

               Conread position:
               2-326
               

               Cow position:
               chrX:42492853-42492520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 247
               

               Conread position:
               2-331
               

               Cow position:
               chrX:33803338-33803003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               239
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               85, 37
               

               Conread position:
               2-331
               

               Cow position:
               chrX:43527180-43527512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 323
               

               Conread position:
               2-332
               

               Cow position:
               chrX:7277605-7277917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               242
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               54, 72
               

               Conread position:
               2-335
               

               Cow position:
               chrX:160355-160024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               235
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               188, 73
               

               Conread position:
               2-335
               

               Cow position:
               chrX:1978173-1978519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               241
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               25, 16
               

               Conread position:
               2-335
               

               Cow position:
               chrX:25337854-25338193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 239
               

               Conread position:
               2-336
               

               Cow position:
               chrX:15545574-15545898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 122
               

               Conread position:
               2-337
               

               Cow position:
               chrX:161105-161419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 133
               

               Conread position:
               2-337
               

               Cow position:
               chrX:6234757-6234443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               2-337
               

               Cow position:
               chrX:10412309-10411979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 128
               

               Conread position:
               2-337
               

               Cow position:
               chrX:38963788-38964115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 78
               

               Conread position:
               2-337
               

               Cow position:
               chrX:41122749-41123069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               186, 121
               

               Conread position:
               2-337
               

               Cow position:
               chrX:41879253-41878924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               186, 43
               

               Conread position:
               2-337
               

               Cow position:
               chrX:47343969-47344303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 236
               

               Conread position:
               2-337
               

               Cow position:
               chrX:47379790-47379460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               258, 179
               

               Conread position:
               2-340
               

               Cow position:
               chrX:11718103-11717777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 122
               

               Conread position:
               2-340
               

               Cow position:
               chrX:38439151-38439491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 20
               

               Conread position:
               2-341
               

               Cow position:
               chrX:1616374-1616034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 205
               

               Conread position:
               2-341
               

               Cow position:
               chrX:17271612-17271274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 237
               

               Conread position:
               2-344
               

               Cow position:
               chrX:41192367-41192718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               253
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               180, 103
               

               Conread position:
               2-345
               

               Cow position:
               chrX:7571583-7571920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 231
               

               Conread position:
               2-345
               

               Cow position:
               chrX:11073528-11073176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 235
               

               Conread position:
               2-345
               

               Cow position:
               chrX:13785701-13785345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               260
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               83, 201
               

               Conread position:
               2-345
               

               Cow position:
               chrX:14884285-14883941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 13
               

               Conread position:
               2-345
               

               Cow position:
               chrX:20582707-20583037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 211
               

               Conread position:
               2-345
               

               Cow position:
               chrX:31489189-31489535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 135
               

               Conread position:
               2-345
               

               Cow position:
               chrX:35223979-35224311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 81
               

               Conread position:
               2-345
               

               Cow position:
               chrX:35409345-35409675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 122
               

               Conread position:
               2-345
               

               Cow position:
               chrX:40269153-40269506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 210
               

               Conread position:
               3-240
               

               Cow position:
               chrX:25848593-25848839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               90, 125
               

               Conread position:
               3-317
               

               Cow position:
               chrX:9252496-9252173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 82
               

               Conread position:
               3-322
               

               Cow position:
               chrX:25419482-25419163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 81
               

               Conread position:
               3-337
               

               Cow position:
               chrX:151579-151912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 165
               

               Conread position:
               3-337
               

               Cow position:
               chrX:14924678-14925012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 142
               

               Conread position:
               3-337
               

               Cow position:
               chrX:28157165-28157507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 21
               

               Conread position:
               4-345
               

               Cow position:
               chrX:47873662-47873321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               194, 150
               

               Conread position:
               5-239
               

               Cow position:
               chrX:26619681-26619443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               185, 20
               

               Conread position:
               5-314
               

               Cow position:
               chrX:12249481-12249786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 232
               

               Conread position:
               5-322
               

               Cow position:
               chrX:15007471-15007155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 231
               

               Conread position:
               5-323
               

               Cow position:
               chrX:878689-878388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 68
               

               Conread position:
               5-323
               

               Cow position:
               chrX:9161268-9161580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 118
               

               Conread position:
               5-323
               

               Cow position:
               chrX:38227410-38227098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 0
               

               Conread position:
               5-326
               

               Cow position:
               chrX:48243772-48243467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               227
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               165, 0
               

               Conread position:
               6-232
               

               Cow position:
               chrX:40365114-40364878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               74, 41
               

               Conread position:
               6-234
               

               Cow position:
               chrX:10916435-10916661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 0
               

               Conread position:
               6-234
               

               Cow position:
               chrX:13069057-13068824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               165, 139
               

               Conread position:
               6-239
               

               Cow position:
               chrX:23696731-23696491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               91, 26
               

               Conread position:
               6-239
               

               Cow position:
               chrX:25302071-25301833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               41, 70
               

               Conread position:
               6-242
               

               Cow position:
               chrX:36840548-36840797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               86, 123
               

               Conread position:
               6-257
               

               Cow position:
               chrX:48160795-48160546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               12, 7
               

               Conread position:
               6-260
               

               Cow position:
               chrX:6659056-6659319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               17, 29
               

               Conread position:
               6-278
               

               Cow position:
               chrX:35268571-35268832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 0
               

               Conread position:
               6-302
               

               Cow position:
               chrX:36778086-36778385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               221
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               72, 236
               

               Conread position:
               6-306
               

               Cow position:
               chrX:16289881-16289579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               184, 198
               

               Conread position:
               6-308
               

               Cow position:
               chrX:24105307-24105604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 229
               

               Conread position:
               6-309
               

               Cow position:
               chrX:36250181-36249880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 229
               

               Conread position:
               6-312
               

               Cow position:
               chrX:12290418-12290706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               221
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               6-312
               

               Cow position:
               chrX:24288232-24287944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               205
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               163, 73
               

               Conread position:
               6-313
               

               Cow position:
               chrX:12309707-12309401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 66
               

               Conread position:
               6-316
               

               Cow position:
               chrX:11844557-11844260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 66
               

               Conread position:
               6-319
               

               Cow position:
               chrX:7054054-7053739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               131, 75
               

               Conread position:
               6-319
               

               Cow position:
               chrX:20887963-20887654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               186, 117
               

               Conread position:
               6-319
               

               Cow position:
               chrX:21665910-21665603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 56
               

               Conread position:
               6-319
               

               Cow position:
               chrX:42587748-42587437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               219
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               169, 232
               

               Conread position:
               6-319
               

               Cow position:
               chrX:46532839-46532510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 132
               

               Conread position:
               6-322
               

               Cow position:
               chrX:15147502-15147193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 12
               

               Conread position:
               6-322
               

               Cow position:
               chrX:35681016-35681335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 174
               

               Conread position:
               6-323
               

               Cow position:
               chrX:27446372-27446691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 66
               

               Conread position:
               6-323
               

               Cow position:
               chrX:29289257-29289575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 233
               

               Conread position:
               6-324
               

               Cow position:
               chrX:5871994-5872315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 73
               

               Conread position:
               6-324
               

               Cow position:
               chrX:42247495-42247190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 66
               

               Conread position:
               6-325
               

               Cow position:
               chrX:34454355-34454662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               6-326
               

               Cow position:
               chrX:4996296-4996593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               6-326
               

               Cow position:
               chrX:19019411-19019107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 45
               

               Conread position:
               6-326
               

               Cow position:
               chrX:23583239-23583560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 233
               

               Conread position:
               6-326
               

               Cow position:
               chrX:25035705-25035381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 64
               

               Conread position:
               6-326
               

               Cow position:
               chrX:27442871-27442556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 66
               

               Conread position:
               6-326
               

               Cow position:
               chrX:40481190-40480870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 14
               

               Conread position:
               6-329
               

               Cow position:
               chrX:27705274-27705587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               6-331
               

               Cow position:
               chrX:12115722-12116051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 80
               

               Conread position:
               6-332
               

               Cow position:
               chrX:15139867-15139541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               41, 72
               

               Conread position:
               6-335
               

               Cow position:
               chrX:47743758-47744097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               136, 64
               

               Conread position:
               6-336
               

               Cow position:
               chrX:23299635-23299964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               234
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               184, 233
               

               Conread position:
               6-337
               

               Cow position:
               chrX:13868378-13868711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 66
               

               Conread position:
               6-337
               

               Cow position:
               chrX:17497777-17498092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               327, 190
               

               Conread position:
               6-337
               

               Cow position:
               chrX:34441766-34441441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 66
               

               Conread position:
               6-339
               

               Cow position:
               chrX:40827066-40826741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               213, 160
               

               Conread position:
               6-342
               

               Cow position:
               chrX:34990722-34991048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               322, 127
               

               Conread position:
               6-345
               

               Cow position:
               chrX:31250073-31250403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 24
               

               Conread position:
               6-345
               

               Cow position:
               chrX:38072086-38071751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               237
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               184, 62
               

               Conread position:
               6-345
               

               Cow position:
               chrX:44873860-44873542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               227
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               126, 57
               

               Conread position:
               7-323
               

               Cow position:
               chrX:32128312-32127995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               91, 130
               

               Conread position:
               7-323
               

               Cow position:
               chrX:33639650-33639968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 34
               

               Conread position:
               7-324
               

               Cow position:
               chrX:7695446-7695745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 29
               

               Conread position:
               7-337
               

               Cow position:
               chrX:8796933-8797263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 29
               

               Conread position:
               7-346
               

               Cow position:
               chrX:33827350-33826998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               90, 242
               

               Conread position:
               8-252
               

               Cow position:
               chrX:35633070-35632821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               148, 76
               

               Conread position:
               8-275
               

               Cow position:
               chrX:15596728-15596991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               182, 48
               

               Conread position:
               8-311
               

               Cow position:
               chrX:41790757-41790462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               182, 104
               

               Conread position:
               8-314
               

               Cow position:
               chrX:3654291-3654594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               219
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               182, 61
               

               Conread position:
               8-316
               

               Cow position:
               chrX:42171613-42171308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 64
               

               Conread position:
               8-323
               

               Cow position:
               chrX:19689898-19690213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 15
               

               Conread position:
               8-323
               

               Cow position:
               chrX:28111178-28111502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               72, 232
               

               Conread position:
               8-323
               

               Cow position:
               chrX:28787050-28787350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               217
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               8-323
               

               Cow position:
               chrX:42507961-42507648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 64
               

               Conread position:
               8-335
               

               Cow position:
               chrX:30162680-30163005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               262, 115
               

               Conread position:
               8-337
               

               Cow position:
               chrX:44192758-44192440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 31
               

               Conread position:
               8-345
               

               Cow position:
               chrX:34554418-34554746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               310, 33
               

               Conread position:
               9-240
               

               Cow position:
               chrX:33822788-33823022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               157, 31
               

               Conread position:
               9-251
               

               Cow position:
               chrX:40515587-40515823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               175, 63
               

               Conread position:
               9-312
               

               Cow position:
               chrX:27516217-27516513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               9-319
               

               Cow position:
               chrX:13323335-13323006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               230
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               61, 248
               

               Conread position:
               9-336
               

               Cow position:
               chrX:10302028-10302346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               107, 47
               

               Conread position:
               9-337
               

               Cow position:
               chrX:28845528-28845840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 115
               

               Conread position:
               10-235
               

               Cow position:
               chrX:28516149-28515937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               10-335
               

               Cow position:
               chrX:32743223-32743543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               313, 211
               

               Conread position:
               11-302
               

               Cow position:
               chrX:34663173-34662873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               219
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               75, 185
               

               Conread position:
               11-319
               

               Cow position:
               chrX:19188622-19188929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 225
               

               Conread position:
               12-312
               

               Cow position:
               chrX:23564110-23563806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 227
               

               Conread position:
               17-235
               

               Cow position:
               chrX:38794417-38794643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               18-252
               

               Cow position:
               chrX:25618225-25617977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               18-301
               

               Cow position:
               chrX:25713502-25713767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               155, 33
               

               Conread position:
               18-312
               

               Cow position:
               chrX:630603-630324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               170, 41
               

               Conread position:
               18-319
               

               Cow position:
               chrX:28134042-28134337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 66
               

               Conread position:
               18-322
               

               Cow position:
               chrX:7350995-7351295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 54
               

               Conread position:
               18-323
               

               Cow position:
               chrX:20709768-20710068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               226
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               159, 61
               

               Conread position:
               19-308
               

               Cow position:
               chrX:24200892-24201167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               171, 61
               

               Conread position:
               19-312
               

               Cow position:
               chrX:33466311-33466594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 83
               

               Conread position:
               19-323
               

               Cow position:
               chrX:11314084-11313788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               147, 105
               

               Conread position:
               19-340
               

               Cow position:
               chrX:34564994-34565291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               20-334
               

               Cow position:
               chrX:20376665-20376977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               223
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               164, 58
               

               Conread position:
               20-336
               

               Cow position:
               chrX:3653458-3653767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 205
               

               Conread position:
               20-336
               

               Cow position:
               chrX:10831817-10831484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 213
               

               Conread position:
               22-242
               

               Cow position:
               chrX:4629994-4629764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               26-241
               

               Cow position:
               chrX:4483845-4484065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               153
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               26-300
               

               Cow position:
               chrX:1176273-1176007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               164, 90
               

               Conread position:
               26-312
               

               Cow position:
               chrX:35273045-35273339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               221
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               87, 221
               

               Conread position:
               27-333
               

               Cow position:
               chrX:41238661-41238349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 97
               

               Conread position:
               27-345
               

               Cow position:
               chrX:19015144-19015452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 152
               

               Conread position:
               29-241
               

               Cow position:
               chrX:45976574-45976797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               64, 169
               

               Conread position:
               29-345
               

               Cow position:
               chrX:30133620-30133303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 122
               

               Conread position:
               32-323
               

               Cow position:
               chrX:25237885-25238165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 68
               

               Conread position:
               33-242
               

               Cow position:
               chrX:37102333-37102134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               34-322
               

               Cow position:
               chrX:35041931-35042219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               212
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               156, 38
               

               Conread position:
               35-292
               

               Cow position:
               chrX:44835106-44834845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               158, 197
               

               Conread position:
               37-334
               

               Cow position:
               chrX:31294828-31294557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               222
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               38-345
               

               Cow position:
               chrX:48195328-48195020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 190
               

               Conread position:
               41-302
               

               Cow position:
               chrX:4269351-4269087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 26
               

               Conread position:
               41-324
               

               Cow position:
               chrX:46033002-46032725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               157, 75
               

               Conread position:
               41-345
               

               Cow position:
               chrX:46723025-46722719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 198
               

               Conread position:
               42-337
               

               Cow position:
               chrX:2467597-2467891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 48
               

               Conread position:
               43-337
               

               Cow position:
               chrX:16762490-16762778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 40
               

               Conread position:
               44-326
               

               Cow position:
               chrX:42874697-42874982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 79
               

               Conread position:
               45-316
               

               Cow position:
               chrX:8730799-8731075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               206
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               145, 197
               

               Conread position:
               45-335
               

               Cow position:
               chrX:28097845-28098120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               210
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               119, 78
               

               Conread position:
               45-337
               

               Cow position:
               chrX:9997611-9997327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 25
               

               Conread position:
               47-272
               

               Cow position:
               chrX:40774746-40774515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               137, 36
               

               Conread position:
               47-319
               

               Cow position:
               chrX:8925428-8925692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 25
               

               Conread position:
               48-242
               

               Cow position:
               chrX:29925853-29925659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               129, 47
               

               Conread position:
               48-312
               

               Cow position:
               chrX:30921908-30922170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               126, 118
               

               Conread position:
               50-318
               

               Cow position:
               chrX:47191670-47191421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               197
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               50-332
               

               Cow position:
               chrX:7496974-7497245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               204
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               135, 13
               

               Conread position:
               54-323
               

               Cow position:
               chrX:488219-488487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               202
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               130, 69
               

               Conread position:
               54-337
               

               Cow position:
               chrX:34270145-34270409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               55-345
               

               Cow position:
               chrX:17725708-17725990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               219
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               135, 66
               

               Conread position:
               57-222
               

               Cow position:
               chrX:5856591-5856422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               133, 55
               

               Conread position:
               57-319
               

               Cow position:
               chrX:45404102-45403836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               133, 182
               

               Conread position:
               57-322
               

               Cow position:
               chrX:17541696-17541952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               196
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               134, 66
               

               Conread position:
               57-345
               

               Cow position:
               chrX:10095758-10096047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               168, 162
               

               Conread position:
               57-345
               

               Cow position:
               chrX:12018007-12018307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 270
               

               Conread position:
               58-312
               

               Cow position:
               chrX:40183617-40183359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               194
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               132, 181
               

               Conread position:
               59-253
               

               Cow position:
               chrX:16531733-16531926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               127, 64
               

               Conread position:
               59-326
               

               Cow position:
               chrX:40647712-40647984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 64
               

               Conread position:
               62-252
               

               Cow position:
               chrX:7362116-7361921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               36, 22
               

               Conread position:
               63-246
               

               Cow position:
               chrX:31473260-31473452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               63-313
               

               Cow position:
               chrX:27432180-27431929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               184
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               125, 11
               

               Conread position:
               66-312
               

               Cow position:
               chrX:27509279-27509039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               124, 169
               

               Conread position:
               66-319
               

               Cow position:
               chrX:20151591-20151841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 0
               

               Conread position:
               67-253
               

               Cow position:
               chrX:30763677-30763491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               95, 13
               

               Conread position:
               67-312
               

               Cow position:
               chrX:32020380-32020135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 168
               

               Conread position:
               72-246
               

               Cow position:
               chrX:48536919-48536738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               20, 62
               

               Conread position:
               72-328
               

               Cow position:
               chrX:28878415-28878168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               198
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               51, 117
               

               Conread position:
               72-337
               

               Cow position:
               chrX:25816149-25815900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               200
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               159, 0
               

               Conread position:
               72-344
               

               Cow position:
               chrX:41673850-41674126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               32, 6
               

               Conread position:
               72-345
               

               Cow position:
               chrX:24366082-24365806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               146, 33
               

               Conread position:
               73-326
               

               Cow position:
               chrX:23497915-23497669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 50
               

               Conread position:
               78-323
               

               Cow position:
               chrX:24259824-24259588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               176
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               112, 6
               

               Conread position:
               79-325
               

               Cow position:
               chrX:9416938-9416696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               105, 5
               

               Conread position:
               81-345
               

               Cow position:
               chrX:39938761-39938508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               121, 35
               

               Conread position:
               82-340
               

               Cow position:
               chrX:35284374-35284631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 156
               

               Conread position:
               84-316
               

               Cow position:
               chrX:30963113-30962885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               106, 149
               

               Conread position:
               85-253
               

               Cow position:
               chrX:4942989-4942819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               149, 11
               

               Conread position:
               85-326
               

               Cow position:
               chrX:45598844-45598604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               109, 119
               

               Conread position:
               86-233
               

               Cow position:
               chrX:38642021-38642173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               120
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               104, 38
               

               Conread position:
               86-237
               

               Cow position:
               chrX:42530690-42530539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               104, 58
               

               Conread position:
               86-250
               

               Cow position:
               chrX:8517637-8517804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               104, 63
               

               Conread position:
               86-257
               

               Cow position:
               chrX:17122242-17122072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               17, 83
               

               Conread position:
               86-259
               

               Cow position:
               chrX:42499268-42499095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               118, 130
               

               Conread position:
               86-286
               

               Cow position:
               chrX:34543548-34543746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               104, 74
               

               Conread position:
               86-310
               

               Cow position:
               chrX:10107214-10106978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               91, 55
               

               Conread position:
               86-314
               

               Cow position:
               chrX:9855061-9855283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               104, 118
               

               Conread position:
               86-317
               

               Cow position:
               chrX:2029151-2029381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               104, 37
               

               Conread position:
               86-318
               

               Cow position:
               chrX:27394251-27394032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               183
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               119, 9
               

               Conread position:
               86-319
               

               Cow position:
               chrX:9953902-9954129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               104, 118
               

               Conread position:
               86-319
               

               Cow position:
               chrX:10373068-10373306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               32, 127
               

               Conread position:
               86-319
               

               Cow position:
               chrX:16416269-16416499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               183
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               91, 48
               

               Conread position:
               86-319
               

               Cow position:
               chrX:23970150-23970367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               177
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               86-319
               

               Cow position:
               chrX:33493536-33493768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               104, 45
               

               Conread position:
               86-319
               

               Cow position:
               chrX:43567700-43567913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               86-322
               

               Cow position:
               chrX:7425225-7425464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               22, 178
               

               Conread position:
               86-322
               

               Cow position:
               chrX:17631041-17630812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               181
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               116, 39
               

               Conread position:
               86-322
               

               Cow position:
               chrX:24132390-24132156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               100, 49
               

               Conread position:
               86-322
               

               Cow position:
               chrX:44053019-44053252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               97, 149
               

               Conread position:
               86-323
               

               Cow position:
               chrX:1514643-1514415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               186
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               28, 109
               

               Conread position:
               86-323
               

               Cow position:
               chrX:23514257-23514021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               192
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               79, 56
               

               Conread position:
               86-323
               

               Cow position:
               chrX:29032178-29032405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               98, 38
               

               Conread position:
               86-324
               

               Cow position:
               chrX:21004445-21004677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               106, 30
               

               Conread position:
               86-324
               

               Cow position:
               chrX:21672312-21672551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               104, 153
               

               Conread position:
               86-324
               

               Cow position:
               chrX:26876120-26875889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               182
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               104, 37
               

               Conread position:
               86-326
               

               Cow position:
               chrX:40692977-40692755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               86-333
               

               Cow position:
               chrX:8682169-8681921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               80, 151
               

               Conread position:
               86-337
               

               Cow position:
               chrX:37119360-37119603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               86-337
               

               Cow position:
               chrX:44961508-44961758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               104, 130
               

               Conread position:
               86-345
               

               Cow position:
               chrX:619247-618987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               190
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               104, 118
               

               Conread position:
               86-345
               

               Cow position:
               chrX:41884657-41884397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               104, 118
               

               Conread position:
               86-345
               

               Cow position:
               chrX:42011041-42011297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               145, 40
               

               Conread position:
               86-346
               

               Cow position:
               chrX:11939163-11938919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               104, 47
               

               Conread position:
               87-250
               

               Cow position:
               chrX:9041468-9041301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               10, 37
               

               Conread position:
               87-302
               

               Cow position:
               chrX:9635419-9635211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               109, 148
               

               Conread position:
               87-323
               

               Cow position:
               chrX:19930419-19930646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               102, 6
               

               Conread position:
               87-323
               

               Cow position:
               chrX:27680165-27680390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               185
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               103, 34
               

               Conread position:
               87-331
               

               Cow position:
               chrX:21663071-21663308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               98, 51
               

               Conread position:
               87-337
               

               Cow position:
               chrX:41167202-41166955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 36
               

               Conread position:
               87-339
               

               Cow position:
               chrX:40788967-40789217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               188
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               105, 9
               

               Conread position:
               88-245
               

               Cow position:
               chrX:28856740-28856899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               96, 37
               

               Conread position:
               88-247
               

               Cow position:
               chrX:9837901-9838068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               88-322
               

               Cow position:
               chrX:6690485-6690264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               88-337
               

               Cow position:
               chrX:40116188-40116424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               97, 39
               

               Conread position:
               88-345
               

               Cow position:
               chrX:27772193-27771950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               89, 35
               

               Conread position:
               89-322
               

               Cow position:
               chrX:20752027-20752249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               89-326
               

               Cow position:
               chrX:15814861-15815083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               89-334
               

               Cow position:
               chrX:11589828-11589582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               46, 36
               

               Conread position:
               91-280
               

               Cow position:
               chrX:6639890-6640082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               162
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 144
               

               Conread position:
               91-287
               

               Cow position:
               chrX:7513282-7513473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               94, 40
               

               Conread position:
               91-318
               

               Cow position:
               chrX:38549214-38549437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               172
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               107, 154
               

               Conread position:
               91-323
               

               Cow position:
               chrX:2383255-2383484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               119, 31
               

               Conread position:
               91-337
               

               Cow position:
               chrX:39558582-39558341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               189
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               26, 122
               

               Conread position:
               91-337
               

               Cow position:
               chrX:47757163-47756921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               182
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               101, 154
               

               Conread position:
               92-345
               

               Cow position:
               chrX:17231501-17231750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               98, 115
               

               Conread position:
               92-345
               

               Cow position:
               chrX:36975716-36975967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               189
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               98, 153
               

               Conread position:
               92-346
               

               Cow position:
               chrX:9201314-9201570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               126, 31
               

               Conread position:
               93-319
               

               Cow position:
               chrX:42339168-42338955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               111, 134
               

               Conread position:
               93-337
               

               Cow position:
               chrX:6278738-6278491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 154
               

               Conread position:
               95-312
               

               Cow position:
               chrX:11746612-11746831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               71, 28
               

               Conread position:
               95-323
               

               Cow position:
               chrX:1728647-1728433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               94, 29
               

               Conread position:
               95-323
               

               Cow position:
               chrX:10959632-10959401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               25, 8
               

               Conread position:
               96-240
               

               Cow position:
               chrX:18812029-18812173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               94, 14
               

               Conread position:
               96-312
               

               Cow position:
               chrX:22821818-22822033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               94, 144
               

               Conread position:
               96-322
               

               Cow position:
               chrX:18456163-18456395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               69, 169
               

               Conread position:
               96-322
               

               Cow position:
               chrX:37048810-37048583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               31, 119
               

               Conread position:
               96-323
               

               Cow position:
               chrX:17662826-17662598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               178
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               92, 85
               

               Conread position:
               96-324
               

               Cow position:
               chrX:11455281-11455051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               171
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               147, 27
               

               Conread position:
               96-326
               

               Cow position:
               chrX:5900228-5900467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               178
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               96-337
               

               Cow position:
               chrX:7721755-7721999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               188
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               94, 144
               

               Conread position:
               96-341
               

               Cow position:
               chrX:2648579-2648343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               88, 27
               

               Conread position:
               96-345
               

               Cow position:
               chrX:35542662-35542910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               94, 143
               

               Conread position:
               97-301
               

               Cow position:
               chrX:4482734-4482941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               42, 69
               

               Conread position:
               97-308
               

               Cow position:
               chrX:25411612-25411821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               74, 25
               

               Conread position:
               97-326
               

               Cow position:
               chrX:14900949-14900731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               97, 26
               

               Conread position:
               98-313
               

               Cow position:
               chrX:48684450-48684239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               170
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               203, 133
               

               Conread position:
               98-337
               

               Cow position:
               chrX:11856202-11856437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 40
               

               Conread position:
               99-323
               

               Cow position:
               chrX:44396789-44397013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               73, 17
               

               Conread position:
               99-337
               

               Cow position:
               chrX:13382098-13382338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               27, 141
               

               Conread position:
               99-345
               

               Cow position:
               chrX:22074574-22074810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               187
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               91, 136
               

               Conread position:
               99-346
               

               Cow position:
               chrX:30862076-30862333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               177
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               126, 104
               

               Conread position:
               100-308
               

               Cow position:
               chrX:21642703-21642498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               85, 23
               

               Conread position:
               100-322
               

               Cow position:
               chrX:43049117-43049343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               17, 149
               

               Conread position:
               100-339
               

               Cow position:
               chrX:29509669-29509429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               186
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               85, 135
               

               Conread position:
               100-344
               

               Cow position:
               chrX:4750523-4750289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               85, 26
               

               Conread position:
               100-345
               

               Cow position:
               chrX:20792043-20791800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               90, 153
               

               Conread position:
               101-318
               

               Cow position:
               chrX:17042466-17042683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               89, 136
               

               Conread position:
               102-301
               

               Cow position:
               chrX:16541899-16541698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               88, 21
               

               Conread position:
               102-317
               

               Cow position:
               chrX:6265809-6265610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               102-322
               

               Cow position:
               chrX:6488363-6488574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               181, 82
               

               Conread position:
               102-345
               

               Cow position:
               chrX:40035670-40035426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               5, 138
               

               Conread position:
               103-322
               

               Cow position:
               chrX:36961414-36961637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               13, 25
               

               Conread position:
               105-233
               

               Cow position:
               chrX:23091661-23091793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               105-319
               

               Cow position:
               chrX:46073042-46072829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               19, 98
               

               Conread position:
               105-326
               

               Cow position:
               chrX:1503119-1503334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               69, 18
               

               Conread position:
               105-337
               

               Cow position:
               chrX:36283125-36283363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               72, 134
               

               Conread position:
               107-337
               

               Cow position:
               chrX:11633460-11633689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               177
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               83, 139
               

               Conread position:
               108-326
               

               Cow position:
               chrX:29120841-29121044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               167
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               113-240
               

               Cow position:
               chrX:41560451-41560325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               97
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               113-281
               

               Cow position:
               chrX:12980043-12979874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               66, 126
               

               Conread position:
               113-308
               

               Cow position:
               chrX:27174782-27174977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               14, 123
               

               Conread position:
               113-318
               

               Cow position:
               chrX:40567387-40567592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               72, 126
               

               Conread position:
               114-245
               

               Cow position:
               chrX:18248100-18248231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               98
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               114-319
               

               Cow position:
               chrX:29542430-29542228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               71, 121
               

               Conread position:
               115-232
               

               Cow position:
               chrX:46430068-46429947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               98
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               116-312
               

               Cow position:
               chrX:47046729-47046522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               116-322
               

               Cow position:
               chrX:29602040-29601836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               161
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               74, 15
               

               Conread position:
               116-336
               

               Cow position:
               chrX:28836110-28835896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               76, 21
               

               Conread position:
               116-345
               

               Cow position:
               chrX:45015377-45015591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               118-319
               

               Cow position:
               chrX:26285772-26285970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               72, 118
               

               Conread position:
               118-322
               

               Cow position:
               chrX:45993013-45993221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               70, 14
               

               Conread position:
               118-322
               

               Cow position:
               chrX:46315588-46315383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               72, 119
               

               Conread position:
               118-345
               

               Cow position:
               chrX:3579737-3579959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               72, 117
               

               Conread position:
               119-337
               

               Cow position:
               chrX:46587611-46587829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               171
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               71, 116
               

               Conread position:
               120-335
               

               Cow position:
               chrX:33000697-33000909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               5, 85
               

               Conread position:
               121-323
               

               Cow position:
               chrX:30833049-30832854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               69, 5
               

               Conread position:
               123-340
               

               Cow position:
               chrX:18216074-18216298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               67, 129
               

               Conread position:
               124-324
               

               Cow position:
               chrX:1499468-1499661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               159
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               125-318
               

               Cow position:
               chrX:43780053-43779856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               79, 64
               

               Conread position:
               126-317
               

               Cow position:
               chrX:4091448-4091637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               72, 107
               

               Conread position:
               127-317
               

               Cow position:
               chrX:12405575-12405394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               140
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               127-345
               

               Cow position:
               chrX:29545078-29544862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               49, 110
               

               Conread position:
               135-300
               

               Cow position:
               chrX:23785463-23785635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               55, 103
               

               Conread position:
               135-323
               

               Cow position:
               chrX:43730405-43730227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               68, 76
               

               Conread position:
               135-329
               

               Cow position:
               chrX:37540934-37541125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               55, 98
               

               Conread position:
               136-339
               

               Cow position:
               chrX:1505523-1505720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               149
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               54, 24
               

               Conread position:
               137-323
               

               Cow position:
               chrX:42235722-42235533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               43, 67
               

               Conread position:
               138-326
               

               Cow position:
               chrX:41992228-41992047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               65, 20
               

               Conread position:
               139-337
               

               Cow position:
               chrX:31256681-31256874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               63, 95
               

               Conread position:
               143-337
               

               Cow position:
               chrX:32820847-32821036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               42, 11
               

               Conread position:
               144-337
               

               Cow position:
               chrX:7336645-7336834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               23, 91
               

               Conread position:
               149-324
               

               Cow position:
               chrX:47186497-47186325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               41, 103
               

               Conread position:
               152-322
               

               Cow position:
               chrX:22387421-22387248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               28, 88
               

               Conread position:
               153-337
               

               Cow position:
               chrX:6407376-6407553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               154-322
               

               Cow position:
               chrX:37955666-37955825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               124
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               168-324
               

               Cow position:
               chrX:27227966-27228124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               26, 67
               

               Conread position:
               181-332
               

               Cow position:
               chrX:29680400-29680255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               143, 50
               

               Conread position:
               190-324
               

               Cow position:
               chrX:31986998-31986865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               106
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               54, 26
               

               Conread position:
               190-337
               

               Cow position:
               chrX:9365806-9365669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               192-322
               

               Cow position:
               chrX:7710672-7710544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               99
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               192-325
               

               Cow position:
               chrX:38728608-38728735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               106
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               39, 0
               
Show alignments to all cow chromosomes.
Conread position:	1-299
Cow position:	chrX:11581611-11581917 (view UCSC Genome Browser custom track)
Alignm length:	311
Alignm identity:	242
Alignm E-value:	0
Alignm gaps (pig, cow):	170, 53
Conread position:	1-338
Cow position:	chrX:30543606-30543279 (view UCSC Genome Browser custom track)
Alignm length:	341
Alignm identity:	246
Alignm E-value:	0
Alignm gaps (pig, cow):	189, 108
Conread position:	2-206
Cow position:	chrX:12096570-12096367 (view UCSC Genome Browser custom track)
Alignm length:	205
Alignm identity:	161
Alignm E-value:	0
Alignm gaps (pig, cow):	121, 0
Conread position:	2-233
Cow position:	chrX:29049652-29049876 (view UCSC Genome Browser custom track)
Alignm length:	232
Alignm identity:	183
Alignm E-value:	0
Alignm gaps (pig, cow):	82, 0
Conread position:	2-234
Cow position:	chrX:8661438-8661675 (view UCSC Genome Browser custom track)
Alignm length:	241
Alignm identity:	161
Alignm E-value:	4e-21
Alignm gaps (pig, cow):	190, 133
Conread position:	2-236
Cow position:	chrX:3161339-3161099 (view UCSC Genome Browser custom track)
Alignm length:	241
Alignm identity:	179
Alignm E-value:	3.99931e-42
Alignm gaps (pig, cow):	125, 0
Conread position:	2-246
Cow position:	chrX:2300608-2300851 (view UCSC Genome Browser custom track)
Alignm length:	247
Alignm identity:	183
Alignm E-value:	2.00386e-43
Alignm gaps (pig, cow):	96, 202
Conread position:	2-258
Cow position:	chrX:25283463-25283213 (view UCSC Genome Browser custom track)
Alignm length:	257
Alignm identity:	199
Alignm E-value:	0
Alignm gaps (pig, cow):	63, 0
Conread position:	2-278
Cow position:	chrX:42855088-42855365 (view UCSC Genome Browser custom track)
Alignm length:	285
Alignm identity:	220
Alignm E-value:	0
Alignm gaps (pig, cow):	188, 77
Conread position:	2-282
Cow position:	chrX:7382001-7382288 (view UCSC Genome Browser custom track)
Alignm length:	289
Alignm identity:	226
Alignm E-value:	0
Alignm gaps (pig, cow):	188, 39
Conread position:	2-292
Cow position:	chrX:4123512-4123802 (view UCSC Genome Browser custom track)
Alignm length:	291
Alignm identity:	229
Alignm E-value:	0
Alignm gaps (pig, cow):	0, 0
Conread position:	2-297
Cow position:	chrX:20801454-20801744 (view UCSC Genome Browser custom track)
Alignm length:	302
Alignm identity:	206
Alignm E-value:	4e-31
Alignm gaps (pig, cow):	29, 96
Conread position:	2-301
Cow position:	chrX:36692912-36693209 (view UCSC Genome Browser custom track)
Alignm length:	304
Alignm identity:	217
Alignm E-value:	1.96182e-44
Alignm gaps (pig, cow):	163, 231
Conread position:	2-308
Cow position:	chrX:38967328-38967628 (view UCSC Genome Browser custom track)
Alignm length:	312
Alignm identity:	240
Alignm E-value:	0
Alignm gaps (pig, cow):	25, 61
Conread position:	2-309
Cow position:	chrX:38218395-38218689 (view UCSC Genome Browser custom track)
Alignm length:	316
Alignm identity:	230
Alignm E-value:	4.00001e-41
Alignm gaps (pig, cow):	188, 70
Conread position:	2-310
Cow position:	chrX:37843397-37843703 (view UCSC Genome Browser custom track)
Alignm length:	313
Alignm identity:	232
Alignm E-value:	0
Alignm gaps (pig, cow):	183, 233
Conread position:	2-311
Cow position:	chrX:21063963-21064265 (view UCSC Genome Browser custom track)
Alignm length:	313
Alignm identity:	227
Alignm E-value:	0
Alignm gaps (pig, cow):	184, 164
Conread position:	2-312
Cow position:	chrX:40452536-40452225 (view UCSC Genome Browser custom track)
Alignm length:	319
Alignm identity:	239
Alignm E-value:	0
Alignm gaps (pig, cow):	188, 237
Conread position:	2-313
Cow position:	chrX:38007091-38006779 (view UCSC Genome Browser custom track)
Alignm length:	320
Alignm identity:	236
Alignm E-value:	0
Alignm gaps (pig, cow):	181, 237
Conread position:	2-314
Cow position:	chrX:33855563-33855248 (view UCSC Genome Browser custom track)
Alignm length:	325
Alignm identity:	239
Alignm E-value:	0
Alignm gaps (pig, cow):	84, 40