Cow genome map
| Conread name: | Pig2-33D08 | 
| Conread position: | 2-374 | 
| Cow position: | chr6:27534306-27534693 (view UCSC Genome Browser custom track) | 
| Alignm length: | 388 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 0 | 
| Conread position: | 3-356 | 
| Cow position: | chr6:3893154-3893509 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 251 | 
| Conread position: | 3-358 | 
| Cow position: | chr6:43187590-43187239 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 67 | 
| Conread position: | 3-371 | 
| Cow position: | chr6:65874807-65875168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 41 | 
| Conread position: | 3-373 | 
| Cow position: | chr6:50120446-50120815 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 82 | 
| Conread position: | 4-371 | 
| Cow position: | chr6:35724863-35724497 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 25, 6 | 
| Conread position: | 7-307 | 
| Cow position: | chr6:54358048-54358339 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 37 | 
| Conread position: | 7-357 | 
| Cow position: | chr6:62961373-62961030 (view UCSC Genome Browser custom track) | 
| Alignm length: | 354 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 165, 37 | 
| Conread position: | 7-367 | 
| Cow position: | chr6:14290037-14290385 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 62 | 
| Conread position: | 7-369 | 
| Cow position: | chr6:29689336-29688980 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 200 | 
| Conread position: | 7-371 | 
| Cow position: | chr6:33984273-33983929 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 168, 19 | 
| Conread position: | 7-373 | 
| Cow position: | chr6:21588461-21588095 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 238 | 
| Conread position: | 7-374 | 
| Cow position: | chr6:63406266-63405920 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 176, 19 | 
| Conread position: | 8-304 | 
| Cow position: | chr6:6601434-6601713 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 7e-32 | 
| Alignm gaps (pig, cow): | 16, 35 | 
| Conread position: | 8-310 | 
| Cow position: | chr6:9322479-9322179 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 51 | 
| Conread position: | 8-310 | 
| Cow position: | chr6:51674242-51673948 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 176 | 
| Conread position: | 8-328 | 
| Cow position: | chr6:57383892-57383572 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 8.00141e-43 | 
| Alignm gaps (pig, cow): | 15, 85 | 
| Conread position: | 8-331 | 
| Cow position: | chr6:17344675-17344353 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 54 | 
| Conread position: | 8-335 | 
| Cow position: | chr6:44510566-44510239 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 144 | 
| Conread position: | 8-338 | 
| Cow position: | chr6:51877231-51876911 (view UCSC Genome Browser custom track) | 
| Alignm length: | 338 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 91 | 
| Conread position: | 8-349 | 
| Cow position: | chr6:10695197-10694857 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 141 | 
| Conread position: | 8-360 | 
| Cow position: | chr6:53811054-53810714 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 35 | 
| Conread position: | 8-365 | 
| Cow position: | chr6:14897658-14897299 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 208 | 
| Conread position: | 8-367 | 
| Cow position: | chr6:32018628-32018995 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 39 | 
| Conread position: | 8-367 | 
| Cow position: | chr6:38439087-38438723 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 240 | 
| Conread position: | 8-367 | 
| Cow position: | chr6:41677405-41677051 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 146 | 
| Conread position: | 8-367 | 
| Cow position: | chr6:47381160-47380783 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 0 | 
| Conread position: | 8-369 | 
| Cow position: | chr6:34030733-34030396 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 14, 125 | 
| Conread position: | 8-369 | 
| Cow position: | chr6:47574264-47573913 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 163, 59 | 
| Conread position: | 8-369 | 
| Cow position: | chr6:59507682-59507353 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 8.00141e-43 | 
| Alignm gaps (pig, cow): | 105, 20 | 
| Conread position: | 8-371 | 
| Cow position: | chr6:727164-727514 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 166, 28 | 
| Conread position: | 8-371 | 
| Cow position: | chr6:9737788-9738141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 60, 14 | 
| Conread position: | 8-371 | 
| Cow position: | chr6:21832184-21832547 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 240 | 
| Conread position: | 8-371 | 
| Cow position: | chr6:29484450-29484094 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 35 | 
| Conread position: | 8-371 | 
| Cow position: | chr6:33466433-33466071 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 186 | 
| Conread position: | 8-371 | 
| Cow position: | chr6:34075345-34074981 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 144, 23 | 
| Conread position: | 8-371 | 
| Cow position: | chr6:42267193-42266852 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 166, 18 | 
| Conread position: | 8-371 | 
| Cow position: | chr6:55593546-55593183 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 141 | 
| Conread position: | 8-372 | 
| Cow position: | chr6:3928610-3928254 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 9, 121 | 
| Conread position: | 8-372 | 
| Cow position: | chr6:11193105-11193474 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 183 | 
| Conread position: | 8-372 | 
| Cow position: | chr6:11638730-11639087 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 155 | 
| Conread position: | 8-372 | 
| Cow position: | chr6:35416500-35416861 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 28 | 
| Conread position: | 8-373 | 
| Cow position: | chr6:2618089-2618455 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 83 | 
| Conread position: | 8-373 | 
| Cow position: | chr6:17149699-17150063 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 36 | 
| Conread position: | 8-374 | 
| Cow position: | chr6:1274378-1274735 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 81 | 
| Conread position: | 8-374 | 
| Cow position: | chr6:10236664-10236306 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 21 | 
| Conread position: | 8-374 | 
| Cow position: | chr6:14851277-14851636 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 40, 14 | 
| Conread position: | 8-374 | 
| Cow position: | chr6:24623666-24624028 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 207 | 
| Conread position: | 8-374 | 
| Cow position: | chr6:57857246-57856879 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 152 | 
| Conread position: | 8-375 | 
| Cow position: | chr6:33896172-33896531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 181, 21 | 
| Conread position: | 8-375 | 
| Cow position: | chr6:46283629-46283990 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 28 | 
| Conread position: | 8-379 | 
| Cow position: | chr6:4903525-4903891 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 188 | 
| Conread position: | 9-367 | 
| Cow position: | chr6:32287029-32286671 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 232 | 
| Conread position: | 9-371 | 
| Cow position: | chr6:44017354-44017715 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 55, 60 | 
| Conread position: | 9-374 | 
| Cow position: | chr6:62326748-62326384 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 20, 125 | 
| Conread position: | 10-359 | 
| Cow position: | chr6:55386927-55386591 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 305, 18 | 
| Conread position: | 10-367 | 
| Cow position: | chr6:31270852-31270500 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 8e-23 | 
| Alignm gaps (pig, cow): | 22, 82 | 
| Conread position: | 10-371 | 
| Cow position: | chr6:43797423-43797788 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 239 | 
| Conread position: | 11-315 | 
| Cow position: | chr6:45901520-45901821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 9, 41 | 
| Conread position: | 11-348 | 
| Cow position: | chr6:40251327-40251661 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 7, 72 | 
| Conread position: | 11-360 | 
| Cow position: | chr6:1402091-1402433 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 161, 84 | 
| Conread position: | 11-360 | 
| Cow position: | chr6:1406679-1407021 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 161, 84 | 
| Conread position: | 11-374 | 
| Cow position: | chr6:6034328-6034687 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 161, 36 | 
| Conread position: | 11-374 | 
| Cow position: | chr6:16645356-16645006 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 301, 168 | 
| Conread position: | 11-374 | 
| Cow position: | chr6:19712772-19713124 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 210 | 
| Conread position: | 11-374 | 
| Cow position: | chr6:19719041-19718695 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 54, 111 | 
| Conread position: | 11-374 | 
| Cow position: | chr6:28184848-28185209 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 53, 58 | 
| Conread position: | 11-374 | 
| Cow position: | chr6:44146476-44146837 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 163, 118 | 
| Conread position: | 11-374 | 
| Cow position: | chr6:46763933-46764292 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 6, 35 | 
| Conread position: | 11-374 | 
| Cow position: | chr6:53543010-53543373 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 236 | 
| Conread position: | 11-374 | 
| Cow position: | chr6:65819109-65819470 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 236 | 
| Conread position: | 12-371 | 
| Cow position: | chr6:6182254-6182595 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 76 | 
| Conread position: | 12-371 | 
| Cow position: | chr6:20552771-20553128 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 171 | 
| Conread position: | 12-371 | 
| Cow position: | chr6:34494144-34493788 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 20 | 
| Conread position: | 12-371 | 
| Cow position: | chr6:34504052-34504408 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 20 | 
| Conread position: | 14-359 | 
| Cow position: | chr6:60876765-60876421 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 160, 232 | 
| Conread position: | 14-367 | 
| Cow position: | chr6:58594937-58595289 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 6, 179 | 
| Conread position: | 14-369 | 
| Cow position: | chr6:35601147-35600794 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 160, 197 | 
| Conread position: | 14-372 | 
| Cow position: | chr6:3272013-3272369 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 160, 232 | 
| Conread position: | 14-372 | 
| Cow position: | chr6:33949693-33950048 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 22 | 
| Conread position: | 15-336 | 
| Cow position: | chr6:27887379-27887062 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 159, 132 | 
| Conread position: | 15-374 | 
| Cow position: | chr6:6595886-6595533 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 55, 38 | 
| Conread position: | 15-374 | 
| Cow position: | chr6:14928919-14928569 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 33 | 
| Conread position: | 15-374 | 
| Cow position: | chr6:22043541-22043898 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 159, 202 | 
| Conread position: | 16-306 | 
| Cow position: | chr6:11389147-11389434 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 6.99949e-42 | 
| Alignm gaps (pig, cow): | 151, 143 | 
| Conread position: | 16-308 | 
| Cow position: | chr6:32664634-32664924 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 27, 231 | 
| Conread position: | 16-310 | 
| Cow position: | chr6:20581309-20581600 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 6e-40 | 
| Alignm gaps (pig, cow): | 156, 230 | 
| Conread position: | 16-311 | 
| Cow position: | chr6:48882210-48881922 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 5e-39 | 
| Alignm gaps (pig, cow): | 156, 72 | 
| Conread position: | 16-315 | 
| Cow position: | chr6:7448962-7448666 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 158, 227 | 
| Conread position: | 16-315 | 
| Cow position: | chr6:18912268-18912563 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 159, 84 | 
| Conread position: | 16-315 | 
| Cow position: | chr6:55361328-55361624 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 156, 230 | 
| Conread position: | 16-323 | 
| Cow position: | chr6:20267849-20268147 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 158, 128 | 
| Conread position: | 16-331 | 
| Cow position: | chr6:46225498-46225809 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 158, 95 | 
| Conread position: | 16-346 | 
| Cow position: | chr6:2089736-2089414 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 6.99949e-42 | 
| Alignm gaps (pig, cow): | 132, 35 | 
| Conread position: | 16-350 | 
| Cow position: | chr6:508054-508388 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 148, 231 | 
| Conread position: | 16-350 | 
| Cow position: | chr6:45975966-45975633 (view UCSC Genome Browser custom track) | 
| Alignm length: | 338 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 230 | 
| Conread position: | 16-359 | 
| Cow position: | chr6:11721741-11722083 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 230 | 
| Conread position: | 16-359 | 
| Cow position: | chr6:55239157-55238815 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 227 | 
| Conread position: | 16-361 | 
| Cow position: | chr6:13591776-13591436 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 26 | 
| Conread position: | 16-367 | 
| Cow position: | chr6:10681451-10681113 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 80 | 
| Conread position: | 16-367 | 
| Cow position: | chr6:26667558-26667907 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 53 | 
| Conread position: | 16-369 | 
| Cow position: | chr6:43779158-43778821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 214, 51 | 
| Conread position: | 16-370 | 
| Cow position: | chr6:28065457-28065105 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 197 | 
| Conread position: | 16-370 | 
| Cow position: | chr6:39136965-39136617 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 144, 114 | 
| Conread position: | 16-370 | 
| Cow position: | chr6:45666467-45666813 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 26 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:479013-478663 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 23 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:706465-706111 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 230 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:1537172-1536818 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 230 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:1834462-1834108 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 230 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:2186315-2186669 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 155, 230 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:3886038-3886391 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 159, 230 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:5946308-5946662 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 30 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:8205654-8205301 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 159, 230 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:11289000-11289353 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 117 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:15275773-15276127 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 230 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:17049840-17049486 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 115 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:17121856-17121499 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 52 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:20451426-20451073 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 126, 136 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:24242754-24242402 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 230 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:25374641-25374995 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 217 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:25790250-25790586 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 158, 122 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:27475883-27475524 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 5.99994e-41 | 
| Alignm gaps (pig, cow): | 55, 237 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:28481791-28481445 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 164, 12 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:35873265-35873616 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 127 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:36531741-36531386 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 230 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:39331066-39331418 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 117 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:40813828-40813478 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 304, 164 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:40863565-40863916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 141, 146 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:47039744-47040096 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 117, 105 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:50571658-50571304 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 230 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:51718024-51717668 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 200 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:51733548-51733195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 32 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:55903555-55903202 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 18 | 
| Conread position: | 16-371 | 
| Cow position: | chr6:60332812-60332456 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 232 | 
| Conread position: | 16-372 | 
| Cow position: | chr6:3484952-3485307 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 153, 230 | 
| Conread position: | 16-372 | 
| Cow position: | chr6:7105067-7105416 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 157, 111 | 
| Conread position: | 16-372 | 
| Cow position: | chr6:12927035-12926685 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 160, 22 | 
| Conread position: | 16-372 | 
| Cow position: | chr6:33301135-33300777 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 153, 233 | 
| Conread position: | 16-372 | 
| Cow position: | chr6:47149504-47149858 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 15 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:126668-127022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 187 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:327896-328253 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 126, 84 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:451796-452153 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 226 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:843360-843718 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 157, 231 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:889024-888667 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:1797092-1796737 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:2875567-2875921 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:3152682-3152328 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 187 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:6568767-6569117 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 57 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:7137875-7138230 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 159, 225 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:7467184-7467540 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 30 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:9234978-9234622 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 232 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:10044673-10044325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 69 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:11020125-11019767 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:11401787-11401430 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:11453400-11453758 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 219 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:11869469-11869824 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 101 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:12662855-12663205 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 158, 69 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:12997886-12997531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 186 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:13307931-13308287 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:16049826-16050182 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 80 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:17111699-17112055 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 52 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:17386990-17386633 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:18803592-18803948 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:19103441-19103798 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:21163770-21163413 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:21712173-21711816 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:22737239-22737596 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:23879592-23879946 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 155, 63 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:26324733-26325089 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 232 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:26771655-26772011 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 53 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:27094120-27094476 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 225 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:27173308-27172939 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 0 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:28000929-28001281 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:28160876-28160519 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 30 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:31912708-31913065 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:31941334-31940977 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:33808967-33809324 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:37388033-37387688 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 158, 228 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:39912789-39912434 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:43087136-43087486 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 18, 165 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:45479621-45479978 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:46948282-46947929 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 151, 63 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:51150409-51150052 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:53537543-53537185 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 206 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:55538804-55539161 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:56926200-56925842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 160, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:57521642-57521285 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:58031243-58030889 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 28 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:60379630-60379273 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:62665242-62664885 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:63177510-63177153 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 230 | 
| Conread position: | 16-374 | 
| Cow position: | chr6:67553699-67553342 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 206 | 
| Conread position: | 16-375 | 
| Cow position: | chr6:23568126-23568484 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 219 | 
| Conread position: | 16-375 | 
| Cow position: | chr6:40278518-40278168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 66 | 
| Conread position: | 17-370 | 
| Cow position: | chr6:8753989-8754340 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 157, 230 | 
| Conread position: | 17-374 | 
| Cow position: | chr6:56451629-56451985 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 155, 229 | 
| Conread position: | 18-371 | 
| Cow position: | chr6:15137708-15138060 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 228 | 
| Conread position: | 18-371 | 
| Cow position: | chr6:64719780-64719431 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 157, 9 | 
| Conread position: | 18-373 | 
| Cow position: | chr6:52249048-52249397 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 75 | 
| Conread position: | 18-374 | 
| Cow position: | chr6:40550235-40550590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 204 | 
| Conread position: | 18-374 | 
| Cow position: | chr6:53672798-53672446 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 155, 226 | 
| Conread position: | 18-374 | 
| Cow position: | chr6:64426248-64425902 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 47 | 
| Conread position: | 18-377 | 
| Cow position: | chr6:6471472-6471826 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 26 | 
| Conread position: | 22-359 | 
| Cow position: | chr6:1263617-1263287 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 290, 158 | 
| Conread position: | 22-374 | 
| Cow position: | chr6:6557422-6557071 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 150, 224 | 
| Conread position: | 22-374 | 
| Cow position: | chr6:6721432-6721080 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 91, 24 | 
| Conread position: | 23-312 | 
| Cow position: | chr6:5096348-5096632 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 133, 184 | 
| Conread position: | 23-328 | 
| Cow position: | chr6:7216255-7215951 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 151, 223 | 
| Conread position: | 23-360 | 
| Cow position: | chr6:59596704-59596367 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 19 | 
| Conread position: | 23-371 | 
| Cow position: | chr6:917518-917156 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 116, 238 | 
| Conread position: | 23-371 | 
| Cow position: | chr6:9733533-9733857 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 279, 12 | 
| Conread position: | 23-371 | 
| Cow position: | chr6:16410512-16410171 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 151, 12 | 
| Conread position: | 23-371 | 
| Cow position: | chr6:28172364-28172024 (view UCSC Genome Browser custom track) | 
| Alignm length: | 354 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 12, 63 | 
| Conread position: | 23-371 | 
| Cow position: | chr6:41231947-41231601 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 151, 138 | 
| Conread position: | 23-371 | 
| Cow position: | chr6:50114133-50113797 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 151, 42 | 
| Conread position: | 23-374 | 
| Cow position: | chr6:55474767-55474416 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 215 | 
| Conread position: | 24-371 | 
| Cow position: | chr6:16766381-16766727 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 216 | 
| Conread position: | 24-372 | 
| Cow position: | chr6:59619531-59619188 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 18 | 
| Conread position: | 26-372 | 
| Cow position: | chr6:3574241-3573905 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 20 | 
| Conread position: | 27-357 | 
| Cow position: | chr6:60167107-60167431 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 69, 57 | 
| Conread position: | 27-371 | 
| Cow position: | chr6:10650338-10650679 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 217 | 
| Conread position: | 28-315 | 
| Cow position: | chr6:28136205-28135923 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 17, 0 | 
| Conread position: | 28-365 | 
| Cow position: | chr6:32420404-32420068 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 8, 104 | 
| Conread position: | 28-366 | 
| Cow position: | chr6:24631797-24632132 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 21 | 
| Conread position: | 28-367 | 
| Cow position: | chr6:16625235-16624893 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 150, 251 | 
| Conread position: | 28-371 | 
| Cow position: | chr6:14950201-14950539 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 281, 51 | 
| Conread position: | 28-374 | 
| Cow position: | chr6:224054-224394 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 15 | 
| Conread position: | 29-367 | 
| Cow position: | chr6:6459572-6459231 (view UCSC Genome Browser custom track) | 
| Alignm length: | 354 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 34, 39 | 
| Conread position: | 30-374 | 
| Cow position: | chr6:15481012-15480684 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 145, 12 | 
| Conread position: | 31-371 | 
| Cow position: | chr6:6119544-6119874 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 11 | 
| Conread position: | 31-371 | 
| Cow position: | chr6:16703293-16703630 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 143, 106 | 
| Conread position: | 31-371 | 
| Cow position: | chr6:19243491-19243149 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 7e-32 | 
| Alignm gaps (pig, cow): | 7, 185 | 
| Conread position: | 31-371 | 
| Cow position: | chr6:35704066-35704408 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 143, 11 | 
| Conread position: | 31-376 | 
| Cow position: | chr6:618864-618523 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 143, 213 | 
| Conread position: | 32-367 | 
| Cow position: | chr6:29084934-29085258 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 142, 10 | 
| Conread position: | 32-372 | 
| Cow position: | chr6:27526515-27526851 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 78 | 
| Conread position: | 32-374 | 
| Cow position: | chr6:67448476-67448816 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 140, 15 | 
| Conread position: | 35-370 | 
| Cow position: | chr6:16220707-16221014 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 8e-33 | 
| Alignm gaps (pig, cow): | 79, 0 | 
| Conread position: | 35-373 | 
| Cow position: | chr6:18987574-18987251 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 8.00141e-43 | 
| Alignm gaps (pig, cow): | 139, 28 | 
| Conread position: | 35-374 | 
| Cow position: | chr6:15181605-15181265 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 150, 215 | 
| Conread position: | 36-352 | 
| Cow position: | chr6:66839830-66839520 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 8e-23 | 
| Alignm gaps (pig, cow): | 39, 62 | 
| Conread position: | 37-367 | 
| Cow position: | chr6:8633878-8634187 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 137, 104 | 
| Conread position: | 37-371 | 
| Cow position: | chr6:10612276-10611940 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 134, 110 | 
| Conread position: | 43-367 | 
| Cow position: | chr6:41556764-41556449 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 55, 172 | 
| Conread position: | 44-333 | 
| Cow position: | chr6:2110961-2111248 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 130, 167 | 
| Conread position: | 44-371 | 
| Cow position: | chr6:17556234-17556559 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 130, 201 | 
| Conread position: | 45-374 | 
| Cow position: | chr6:7176129-7176455 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 154 | 
| Conread position: | 47-372 | 
| Cow position: | chr6:13314594-13314917 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 74, 155 | 
| Conread position: | 47-374 | 
| Cow position: | chr6:6944511-6944829 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 134 | 
| Conread position: | 47-374 | 
| Cow position: | chr6:61829665-61829339 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 125, 188 | 
| Conread position: | 48-374 | 
| Cow position: | chr6:52065687-52066011 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 124, 7 | 
| Conread position: | 49-304 | 
| Cow position: | chr6:1109442-1109189 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 125, 198 | 
| Conread position: | 49-315 | 
| Cow position: | chr6:26959196-26958927 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 123, 112 | 
| Conread position: | 50-374 | 
| Cow position: | chr6:2366833-2367151 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 85 | 
| Conread position: | 53-370 | 
| Cow position: | chr6:529463-529776 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 121, 108 | 
| Conread position: | 53-371 | 
| Cow position: | chr6:34843283-34843600 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 121, 193 | 
| Conread position: | 56-374 | 
| Cow position: | chr6:16418255-16418572 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 118, 190 | 
| Conread position: | 56-374 | 
| Cow position: | chr6:67173983-67173665 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 113, 149 | 
| Conread position: | 56-375 | 
| Cow position: | chr6:10598428-10598112 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 118, 147 | 
| Conread position: | 58-355 | 
| Cow position: | chr6:44098130-44097836 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 193, 117 | 
| Conread position: | 58-374 | 
| Cow position: | chr6:43621156-43620841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 116, 188 | 
| Conread position: | 67-358 | 
| Cow position: | chr6:52557235-52557510 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 107, 126 | 
| Conread position: | 67-371 | 
| Cow position: | chr6:14263841-14264141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 94 | 
| Conread position: | 67-374 | 
| Cow position: | chr6:36230110-36230416 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 179 | 
| Conread position: | 69-370 | 
| Cow position: | chr6:49761877-49761582 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 105, 19 | 
| Conread position: | 72-371 | 
| Cow position: | chr6:41192736-41192439 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 240, 170 | 
| Conread position: | 82-371 | 
| Cow position: | chr6:25179784-25180069 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 120 | 
| Conread position: | 94-367 | 
| Cow position: | chr6:3119150-3119425 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 80, 47 | 
| Conread position: | 98-360 | 
| Cow position: | chr6:53935253-53935509 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 103 | 
| Conread position: | 99-373 | 
| Cow position: | chr6:65868168-65867895 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 80, 133 | 
| Conread position: | 102-317 | 
| Cow position: | chr6:19336000-19336211 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 72, 19 | 
| Conread position: | 102-359 | 
| Cow position: | chr6:51868368-51868114 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 31, 46 | 
| Conread position: | 102-371 | 
| Cow position: | chr6:30269521-30269790 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 141 | 
| Conread position: | 102-371 | 
| Cow position: | chr6:34405683-34405414 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 16, 142 | 
| Conread position: | 102-371 | 
| Cow position: | chr6:46633499-46633232 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 2.8026e-45 | 
| Alignm gaps (pig, cow): | 72, 96 | 
| Conread position: | 102-374 | 
| Cow position: | chr6:27939414-27939144 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 70, 15 | 
| Conread position: | 102-379 | 
| Cow position: | chr6:50485403-50485678 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 144 | 
| Conread position: | 103-366 | 
| Cow position: | chr6:4274449-4274188 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 77, 110 | 
| Conread position: | 104-369 | 
| Cow position: | chr6:64252487-64252230 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 72, 86 | 
| Conread position: | 105-374 | 
| Cow position: | chr6:43038693-43038957 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 66, 141 | 
| Conread position: | 112-371 | 
| Cow position: | chr6:11353802-11354065 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 62, 175 | 
| Conread position: | 113-374 | 
| Cow position: | chr6:45723779-45724035 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 199, 62 | 
| Conread position: | 113-374 | 
| Cow position: | chr6:68030549-68030289 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 133 | 
| Conread position: | 117-360 | 
| Cow position: | chr6:41531959-41531714 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 55, 80 | 
| Conread position: | 117-374 | 
| Cow position: | chr6:27151075-27151331 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 8.00141e-43 | 
| Alignm gaps (pig, cow): | 55, 116 | 
| Conread position: | 129-374 | 
| Cow position: | chr6:1507156-1507400 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 43, 117 | 
| Conread position: | 129-374 | 
| Cow position: | chr6:49963598-49963843 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 8.00141e-43 | 
| Alignm gaps (pig, cow): | 43, 117 | 
| Conread position: | 129-374 | 
| Cow position: | chr6:66188446-66188690 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 43, 117 | 
| Conread position: | 130-371 | 
| Cow position: | chr6:11168859-11168620 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 42, 34 | 
| Conread position: | 132-371 | 
| Cow position: | chr6:25357516-25357748 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 6e-40 | 
| Alignm gaps (pig, cow): | 42, 80 | 
| Conread position: | 138-345 | 
| Cow position: | chr6:58016694-58016487 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 5e-39 | 
| Alignm gaps (pig, cow): | 36, 106 | 
| Conread position: | 139-367 | 
| Cow position: | chr6:46293107-46293318 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 35, 49 | 
| Conread position: | 149-374 | 
| Cow position: | chr6:33489720-33489944 (view UCSC Genome Browser custom track) | 
| Alignm length: | 229 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 23, 97 | 
| Conread position: | 164-374 | 
| Cow position: | chr6:28399454-28399662 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 8, 82 | 
| Conread position: | 165-374 | 
| Cow position: | chr6:2453164-2452956 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 7, 81 | 
| Conread position: | 171-374 | 
| Cow position: | chr6:9587846-9587645 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 146, 74 | 
| Conread position: | 171-374 | 
| Cow position: | chr6:50113374-50113162 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 38, 0 | 
| Conread position: | 175-371 | 
| Cow position: | chr6:55041820-55042010 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 9, 29 | 
| Conread position: | 176-371 | 
| Cow position: | chr6:18970136-18970322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 176-371 | 
| Cow position: | chr6:41408710-41408518 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 8e-33 | 
| Alignm gaps (pig, cow): | 136, 66 | 
| Conread position: | 177-374 | 
| Cow position: | chr6:43048890-43049085 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 140, 68 | 
| Conread position: | 178-374 | 
| Cow position: | chr6:20350785-20350979 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 8e-33 | 
| Alignm gaps (pig, cow): | 139, 67 | 
| Conread position: | 179-374 | 
| Cow position: | chr6:57228895-57228703 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 133, 42 | 
| Conread position: | 181-371 | 
| Cow position: | chr6:4389042-4388853 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 25, 20 | 
| Conread position: | 185-361 | 
| Cow position: | chr6:42616392-42616220 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 130, 48 | 
| Conread position: | 186-371 | 
| Cow position: | chr6:366186-365998 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 108, 55 | 
| Conread position: | 192-371 | 
| Cow position: | chr6:65930548-65930371 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 120, 50 | 
| Conread position: | 192-374 | 
| Cow position: | chr6:28488288-28488468 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 125, 46 | 
| Conread position: | 195-371 | 
| Cow position: | chr6:57182101-57181931 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 122, 50 | 
| Conread position: | 198-371 | 
| Cow position: | chr6:38873377-38873548 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 114, 47 | 
| Conread position: | 246-371 | 
| Cow position: | chr6:2581641-2581511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 131 | 
| Alignm identity: | 103 | 
| Alignm E-value: | 8e-23 | 
| Alignm gaps (pig, cow): | 66, 0 | 
| Conread position: | 253-374 | 
| Cow position: | chr6:8536062-8536186 (view UCSC Genome Browser custom track) | 
| Alignm length: | 125 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 62, 0 | 
| Conread position: | 264-371 | 
| Cow position: | chr6:48350-48459 (view UCSC Genome Browser custom track) | 
| Alignm length: | 110 | 
| Alignm identity: | 89 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 48, 0 | 
| Conread position: | 264-374 | 
| Cow position: | chr6:13850960-13850848 (view UCSC Genome Browser custom track) | 
| Alignm length: | 113 | 
| Alignm identity: | 92 | 
| Alignm E-value: | 8e-23 | 
| Alignm gaps (pig, cow): | 53, 0 | 
| Conread position: | 264-374 | 
| Cow position: | chr6:17595063-17595175 (view UCSC Genome Browser custom track) | 
| Alignm length: | 113 | 
| Alignm identity: | 92 | 
| Alignm E-value: | 8e-23 | 
| Alignm gaps (pig, cow): | 53, 0 | 
| Conread position: | 264-374 | 
| Cow position: | chr6:28178442-28178330 (view UCSC Genome Browser custom track) | 
| Alignm length: | 113 | 
| Alignm identity: | 92 | 
| Alignm E-value: | 8e-23 | 
| Alignm gaps (pig, cow): | 53, 0 | 
| Conread position: | 264-374 | 
| Cow position: | chr6:33996969-33996857 (view UCSC Genome Browser custom track) | 
| Alignm length: | 113 | 
| Alignm identity: | 91 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 53, 0 | 
| Conread position: | 264-374 | 
| Cow position: | chr6:38932032-38932144 (view UCSC Genome Browser custom track) | 
| Alignm length: | 113 | 
| Alignm identity: | 90 | 
| Alignm E-value: | 7e-21 | 
| Alignm gaps (pig, cow): | 53, 0 | 
| Conread position: | 264-374 | 
| Cow position: | chr6:39898172-39898060 (view UCSC Genome Browser custom track) | 
| Alignm length: | 113 | 
| Alignm identity: | 90 | 
| Alignm E-value: | 7e-21 | 
| Alignm gaps (pig, cow): | 53, 0 | 
| Conread position: | 264-374 | 
| Cow position: | chr6:49826030-49826142 (view UCSC Genome Browser custom track) | 
| Alignm length: | 113 | 
| Alignm identity: | 91 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 53, 0 | 
Show alignments to all cow chromosomes.
