Cow genome map
| Conread name: | Pig2-34G17 |
| Conread position: | 99-354 |
| Cow position: | chr3:364245-364509 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 125-280 |
| Cow position: | chr3:70609565-70609407 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 45 |
| Conread position: | 125-312 |
| Cow position: | chr3:43233446-43233256 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 82, 5 |
| Conread position: | 126-345 |
| Cow position: | chr3:56437-56650 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 23, 71 |
| Conread position: | 128-356 |
| Cow position: | chr3:81277761-81277996 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 128-364 |
| Cow position: | chr3:55189819-55190050 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 64 |
| Conread position: | 136-315 |
| Cow position: | chr3:55947512-55947325 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 136-319 |
| Cow position: | chr3:41328376-41328201 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 136-366 |
| Cow position: | chr3:53221943-53221717 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 146-363 |
| Cow position: | chr3:79220773-79220550 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 146-364 |
| Cow position: | chr3:25690711-25690488 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 59, 194 |
| Conread position: | 146-364 |
| Cow position: | chr3:33698648-33698421 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 146-364 |
| Cow position: | chr3:54903494-54903273 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 57, 191 |
| Conread position: | 146-364 |
| Cow position: | chr3:61361325-61361114 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 110 |
| Conread position: | 146-366 |
| Cow position: | chr3:4160681-4160906 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 146-366 |
| Cow position: | chr3:52017687-52017458 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 51, 189 |
| Conread position: | 147-322 |
| Cow position: | chr3:4087246-4087423 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 61, 93 |
| Conread position: | 147-334 |
| Cow position: | chr3:13301930-13302126 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 50, 96 |
| Conread position: | 147-343 |
| Cow position: | chr3:49731723-49731916 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 147-365 |
| Cow position: | chr3:10958325-10958529 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 147-366 |
| Cow position: | chr3:5100849-5101062 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 147-366 |
| Cow position: | chr3:61678612-61678389 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 173 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 61, 91 |
| Conread position: | 147-366 |
| Cow position: | chr3:80072044-80071815 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 148-279 |
| Cow position: | chr3:74878672-74878804 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 60, 87 |
| Conread position: | 148-303 |
| Cow position: | chr3:34937760-34937602 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 148-311 |
| Cow position: | chr3:11711878-11711707 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 54, 148 |
| Conread position: | 148-317 |
| Cow position: | chr3:13507381-13507209 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 103, 21 |
| Conread position: | 148-322 |
| Cow position: | chr3:73395038-73394859 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 148-329 |
| Cow position: | chr3:55971143-55970960 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 148-336 |
| Cow position: | chr3:44932429-44932244 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 157 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 99, 170 |
| Conread position: | 148-340 |
| Cow position: | chr3:5899738-5899550 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 148-342 |
| Cow position: | chr3:32585069-32584880 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 172, 17 |
| Conread position: | 148-344 |
| Cow position: | chr3:38691490-38691685 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 54, 83 |
| Conread position: | 148-344 |
| Cow position: | chr3:38864032-38863833 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 160 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 154, 99 |
| Conread position: | 148-345 |
| Cow position: | chr3:9641482-9641283 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 158 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 148-345 |
| Cow position: | chr3:52863267-52863464 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 58, 126 |
| Conread position: | 148-354 |
| Cow position: | chr3:56704627-56704827 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 172, 104 |
| Conread position: | 148-355 |
| Cow position: | chr3:33252960-33253169 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 60, 180 |
| Conread position: | 148-355 |
| Cow position: | chr3:56059724-56059516 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 111 |
| Conread position: | 148-355 |
| Cow position: | chr3:75711228-75711028 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 148-361 |
| Cow position: | chr3:3985244-3985034 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 172, 85 |
| Conread position: | 148-364 |
| Cow position: | chr3:2630711-2630498 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 144, 99 |
| Conread position: | 148-364 |
| Cow position: | chr3:13353278-13353060 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 97, 170 |
| Conread position: | 148-364 |
| Cow position: | chr3:45648049-45647835 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 179, 73 |
| Conread position: | 148-365 |
| Cow position: | chr3:72019034-72018822 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 55, 101 |
| Conread position: | 148-366 |
| Cow position: | chr3:2506559-2506781 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 59, 188 |
| Conread position: | 148-366 |
| Cow position: | chr3:2903381-2903600 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 172, 46 |
| Conread position: | 148-366 |
| Cow position: | chr3:21341045-21341265 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 72, 137 |
| Conread position: | 148-366 |
| Cow position: | chr3:22872130-22872354 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 148-366 |
| Cow position: | chr3:28675906-28675687 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 148-366 |
| Cow position: | chr3:31206792-31206570 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 148-366 |
| Cow position: | chr3:42178075-42177858 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 85, 97 |
| Conread position: | 148-366 |
| Cow position: | chr3:49327858-49327644 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 101, 171 |
| Conread position: | 148-366 |
| Cow position: | chr3:54782100-54782313 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 171 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 173, 95 |
| Conread position: | 148-366 |
| Cow position: | chr3:68648082-68647858 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 148-366 |
| Cow position: | chr3:69961797-69962011 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 178, 77 |
| Conread position: | 148-366 |
| Cow position: | chr3:70401818-70401601 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 149-348 |
| Cow position: | chr3:68708088-68708285 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 164 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 98, 143 |
| Conread position: | 149-355 |
| Cow position: | chr3:68881196-68881400 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 166 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 100, 143 |
| Conread position: | 149-364 |
| Cow position: | chr3:8556869-8557081 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 171, 102 |
| Conread position: | 150-364 |
| Cow position: | chr3:48852046-48852266 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 53, 176 |
| Conread position: | 151-361 |
| Cow position: | chr3:71430293-71430508 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 46, 199 |
| Conread position: | 151-366 |
| Cow position: | chr3:82461092-82460881 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 52, 82 |
| Conread position: | 152-364 |
| Cow position: | chr3:65969074-65968855 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 152-366 |
| Cow position: | chr3:5365590-5365383 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 171, 49 |
| Conread position: | 152-366 |
| Cow position: | chr3:8147755-8147965 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 49, 96 |
| Conread position: | 153-304 |
| Cow position: | chr3:80922481-80922329 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 153-366 |
| Cow position: | chr3:18067047-18066832 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 166 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 155-311 |
| Cow position: | chr3:23444983-23445136 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 50, 99 |
| Conread position: | 155-366 |
| Cow position: | chr3:29887512-29887726 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 112 |
| Conread position: | 156-301 |
| Cow position: | chr3:79196471-79196614 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 156-366 |
| Cow position: | chr3:77496730-77496515 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 161-344 |
| Cow position: | chr3:63860987-63861181 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 161-362 |
| Cow position: | chr3:35975203-35975403 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 161, 71 |
| Conread position: | 161-366 |
| Cow position: | chr3:5851019-5851229 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 166 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 164-366 |
| Cow position: | chr3:48362985-48362781 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 85, 50 |
| Conread position: | 165-297 |
| Cow position: | chr3:22734375-22734508 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 69, 65 |
| Conread position: | 170-331 |
| Cow position: | chr3:22716385-22716548 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 180-364 |
| Cow position: | chr3:53429011-53429191 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 145, 69 |
Show alignments to all cow chromosomes.