Cow genome map
| Conread name: | Pig2-34G17 |
| Conread position: | 138-364 |
| Cow position: | chr5:62678641-62678407 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 146-302 |
| Cow position: | chr5:1678363-1678211 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 52, 93 |
| Conread position: | 146-326 |
| Cow position: | chr5:44049669-44049490 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 110 |
| Conread position: | 146-342 |
| Cow position: | chr5:28926213-28926414 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 56, 172 |
| Conread position: | 146-344 |
| Cow position: | chr5:13908645-13908842 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 173, 65 |
| Conread position: | 146-353 |
| Cow position: | chr5:46103972-46104176 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 176, 77 |
| Conread position: | 146-363 |
| Cow position: | chr5:4710179-4710394 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 206, 14 |
| Conread position: | 146-364 |
| Cow position: | chr5:27403268-27403495 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 146-365 |
| Cow position: | chr5:28330365-28330584 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 57, 104 |
| Conread position: | 146-365 |
| Cow position: | chr5:47313444-47313221 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 57, 126 |
| Conread position: | 146-366 |
| Cow position: | chr5:39094523-39094300 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 57, 124 |
| Conread position: | 147-345 |
| Cow position: | chr5:15426496-15426296 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 103, 168 |
| Conread position: | 147-354 |
| Cow position: | chr5:53835680-53835474 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 174, 57 |
| Conread position: | 147-364 |
| Cow position: | chr5:16185054-16184838 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 169 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 173, 108 |
| Conread position: | 147-365 |
| Cow position: | chr5:3204804-3204583 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 50, 118 |
| Conread position: | 147-366 |
| Cow position: | chr5:6130320-6130103 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 57, 177 |
| Conread position: | 147-366 |
| Cow position: | chr5:31731160-31730933 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 147-366 |
| Cow position: | chr5:50821749-50821535 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 173, 122 |
| Conread position: | 147-366 |
| Cow position: | chr5:55942429-55942651 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 209 |
| Conread position: | 148-248 |
| Cow position: | chr5:991432-991332 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 148-259 |
| Cow position: | chr5:63865761-63865650 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 148-280 |
| Cow position: | chr5:30629193-30629324 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 148-284 |
| Cow position: | chr5:6286458-6286598 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 148-303 |
| Cow position: | chr5:7755596-7755742 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 148-303 |
| Cow position: | chr5:48009883-48010036 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 148-304 |
| Cow position: | chr5:4220950-4220790 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 148-304 |
| Cow position: | chr5:7140142-7140295 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 98 |
| Conread position: | 148-307 |
| Cow position: | chr5:50215589-50215752 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 54, 145 |
| Conread position: | 148-309 |
| Cow position: | chr5:34561978-34561813 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 148-312 |
| Cow position: | chr5:57575735-57575567 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 148-338 |
| Cow position: | chr5:5257327-5257522 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 105, 62 |
| Conread position: | 148-342 |
| Cow position: | chr5:27154989-27154793 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 35, 57 |
| Conread position: | 148-345 |
| Cow position: | chr5:17063124-17063326 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 148-345 |
| Cow position: | chr5:65776416-65776618 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 148-345 |
| Cow position: | chr5:72006888-72007085 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 85, 101 |
| Conread position: | 148-352 |
| Cow position: | chr5:25035277-25035466 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 172, 91 |
| Conread position: | 148-355 |
| Cow position: | chr5:41532199-41532413 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 93 |
| Conread position: | 148-356 |
| Cow position: | chr5:8024229-8024434 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 172, 112 |
| Conread position: | 148-361 |
| Cow position: | chr5:21828832-21828615 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 148-361 |
| Cow position: | chr5:48178711-48178923 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 99, 12 |
| Conread position: | 148-364 |
| Cow position: | chr5:5035547-5035762 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 171, 104 |
| Conread position: | 148-364 |
| Cow position: | chr5:24349074-24348860 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 58, 100 |
| Conread position: | 148-364 |
| Cow position: | chr5:34288505-34288721 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 93, 65 |
| Conread position: | 148-365 |
| Cow position: | chr5:5111109-5111329 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 73 |
| Conread position: | 148-365 |
| Cow position: | chr5:34441825-34442045 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 27, 41 |
| Conread position: | 148-365 |
| Cow position: | chr5:34916105-34915890 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 148-366 |
| Cow position: | chr5:3492161-3491948 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 54, 80 |
| Conread position: | 148-366 |
| Cow position: | chr5:4797350-4797566 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 109, 82 |
| Conread position: | 148-366 |
| Cow position: | chr5:6045257-6045033 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 148-366 |
| Cow position: | chr5:9090054-9090275 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 101, 219 |
| Conread position: | 148-366 |
| Cow position: | chr5:14314491-14314269 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 148-366 |
| Cow position: | chr5:14550615-14550839 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 148-366 |
| Cow position: | chr5:16509062-16508843 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 54, 139 |
| Conread position: | 148-366 |
| Cow position: | chr5:30276663-30276442 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 104, 182 |
| Conread position: | 148-366 |
| Cow position: | chr5:33414443-33414658 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 173 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 55, 97 |
| Conread position: | 148-366 |
| Cow position: | chr5:34463618-34463842 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 148-366 |
| Cow position: | chr5:35763241-35763037 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 172, 82 |
| Conread position: | 148-366 |
| Cow position: | chr5:47601785-47601558 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 148-366 |
| Cow position: | chr5:57935143-57935366 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 216 |
| Conread position: | 148-366 |
| Cow position: | chr5:61840158-61839935 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 66, 169 |
| Conread position: | 148-366 |
| Cow position: | chr5:62107525-62107748 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 148-366 |
| Cow position: | chr5:64321718-64321495 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 101, 45 |
| Conread position: | 148-366 |
| Cow position: | chr5:64393124-64392901 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 148-366 |
| Cow position: | chr5:65752823-65752606 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 54, 185 |
| Conread position: | 149-342 |
| Cow position: | chr5:56070821-56070624 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 157 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 100, 166 |
| Conread position: | 149-352 |
| Cow position: | chr5:38833086-38832878 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 101, 9 |
| Conread position: | 149-366 |
| Cow position: | chr5:15598268-15598487 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 81 |
| Conread position: | 149-366 |
| Cow position: | chr5:34638849-34638632 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 95 |
| Conread position: | 149-366 |
| Cow position: | chr5:62826789-62827008 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 150-364 |
| Cow position: | chr5:50533423-50533635 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 172, 103 |
| Conread position: | 150-366 |
| Cow position: | chr5:64139530-64139310 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 151-344 |
| Cow position: | chr5:16938044-16938239 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 75, 120 |
| Conread position: | 151-366 |
| Cow position: | chr5:65941287-65941506 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 187 |
| Conread position: | 152-333 |
| Cow position: | chr5:2309594-2309785 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 152-343 |
| Cow position: | chr5:49685308-49685511 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 49, 78 |
| Conread position: | 152-345 |
| Cow position: | chr5:4032030-4032221 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 50, 83 |
| Conread position: | 153-364 |
| Cow position: | chr5:56443247-56443027 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 69, 180 |
| Conread position: | 155-365 |
| Cow position: | chr5:43858474-43858680 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 165, 48 |
| Conread position: | 156-366 |
| Cow position: | chr5:20407709-20407916 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 157-366 |
| Cow position: | chr5:14415736-14415516 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 45, 122 |
| Conread position: | 161-322 |
| Cow position: | chr5:71494773-71494608 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 161-353 |
| Cow position: | chr5:30845066-30844872 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 156 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 95, 178 |
| Conread position: | 175-354 |
| Cow position: | chr5:57626745-57626568 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 139, 0 |
Show alignments to all cow chromosomes.