Cow genome map
| Conread name: | Pig2-34G17 |
| Conread position: | 74-277 |
| Cow position: | chr6:22253931-22254136 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 129, 72 |
| Conread position: | 103-366 |
| Cow position: | chr6:50445735-50445998 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 52, 27 |
| Conread position: | 127-364 |
| Cow position: | chr6:3978660-3978900 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 20, 187 |
| Conread position: | 130-332 |
| Cow position: | chr6:445320-445106 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 131-350 |
| Cow position: | chr6:41733623-41733404 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 71, 20 |
| Conread position: | 133-357 |
| Cow position: | chr6:49002739-49002954 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 70, 18 |
| Conread position: | 138-345 |
| Cow position: | chr6:10636164-10635959 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 31, 10 |
| Conread position: | 146-296 |
| Cow position: | chr6:58364029-58364180 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 146-303 |
| Cow position: | chr6:9839152-9838987 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 146-322 |
| Cow position: | chr6:12092011-12092178 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 146-330 |
| Cow position: | chr6:66131288-66131105 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 62, 118 |
| Conread position: | 146-332 |
| Cow position: | chr6:20157313-20157120 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 57, 71 |
| Conread position: | 146-361 |
| Cow position: | chr6:54430808-54430584 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 146-366 |
| Cow position: | chr6:50746969-50746738 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 57, 149 |
| Conread position: | 146-366 |
| Cow position: | chr6:54365348-54365562 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 59, 88 |
| Conread position: | 147-290 |
| Cow position: | chr6:48112179-48112042 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 147-355 |
| Cow position: | chr6:60350314-60350527 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 147-361 |
| Cow position: | chr6:25407409-25407630 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 148-277 |
| Cow position: | chr6:9219253-9219124 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 148-284 |
| Cow position: | chr6:60739996-60739859 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 148-287 |
| Cow position: | chr6:31847240-31847379 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 56, 63 |
| Conread position: | 148-302 |
| Cow position: | chr6:18904361-18904517 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 101, 82 |
| Conread position: | 148-302 |
| Cow position: | chr6:60819496-60819341 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 148-312 |
| Cow position: | chr6:50577504-50577336 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 148-322 |
| Cow position: | chr6:21456708-21456884 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 101, 84 |
| Conread position: | 148-322 |
| Cow position: | chr6:63720175-63720005 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 148-338 |
| Cow position: | chr6:46400431-46400616 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 59, 85 |
| Conread position: | 148-340 |
| Cow position: | chr6:37149168-37148985 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 54, 82 |
| Conread position: | 148-342 |
| Cow position: | chr6:61130497-61130697 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 148-343 |
| Cow position: | chr6:899310-899500 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 159 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 172, 146 |
| Conread position: | 148-343 |
| Cow position: | chr6:29485066-29484878 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 148-343 |
| Cow position: | chr6:53460592-53460787 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 159 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 148-344 |
| Cow position: | chr6:6460523-6460325 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 162 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 99, 170 |
| Conread position: | 148-344 |
| Cow position: | chr6:8966071-8965873 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 48 |
| Conread position: | 148-345 |
| Cow position: | chr6:55282307-55282507 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 103, 73 |
| Conread position: | 148-352 |
| Cow position: | chr6:51674893-51674693 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 55, 83 |
| Conread position: | 148-355 |
| Cow position: | chr6:389150-388943 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 172, 142 |
| Conread position: | 148-355 |
| Cow position: | chr6:9008631-9008840 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 148-355 |
| Cow position: | chr6:57164407-57164202 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 118 |
| Conread position: | 148-361 |
| Cow position: | chr6:4383466-4383260 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 148-361 |
| Cow position: | chr6:8804550-8804762 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 203, 104 |
| Conread position: | 148-363 |
| Cow position: | chr6:54132791-54132582 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 26 |
| Conread position: | 148-364 |
| Cow position: | chr6:54867494-54867274 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 59, 144 |
| Conread position: | 148-365 |
| Cow position: | chr6:2012999-2012781 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 148-366 |
| Cow position: | chr6:6614418-6614196 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 93, 199 |
| Conread position: | 148-366 |
| Cow position: | chr6:8637255-8637036 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 148-366 |
| Cow position: | chr6:36196192-36195975 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 21 |
| Conread position: | 148-366 |
| Cow position: | chr6:40138736-40138944 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 173 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 172, 41 |
| Conread position: | 148-366 |
| Cow position: | chr6:46205995-46205779 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 49, 104 |
| Conread position: | 148-366 |
| Cow position: | chr6:47520030-47519812 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 101, 180 |
| Conread position: | 148-366 |
| Cow position: | chr6:52478434-52478664 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 65, 224 |
| Conread position: | 148-366 |
| Cow position: | chr6:62925017-62925232 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 166, 84 |
| Conread position: | 148-366 |
| Cow position: | chr6:65871010-65870785 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 149-283 |
| Cow position: | chr6:61608490-61608352 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 149-364 |
| Cow position: | chr6:36652398-36652188 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 149-366 |
| Cow position: | chr6:20097985-20098203 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 149-366 |
| Cow position: | chr6:26915309-26915091 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 77, 89 |
| Conread position: | 150-364 |
| Cow position: | chr6:32210650-32210865 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 111 |
| Conread position: | 150-366 |
| Cow position: | chr6:29210475-29210263 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 113, 73 |
| Conread position: | 151-286 |
| Cow position: | chr6:19264519-19264658 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 151-366 |
| Cow position: | chr6:11192490-11192691 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 169, 48 |
| Conread position: | 152-366 |
| Cow position: | chr6:42565665-42565447 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 50, 77 |
| Conread position: | 155-353 |
| Cow position: | chr6:49410720-49410906 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 164-334 |
| Cow position: | chr6:47989149-47988983 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 85, 49 |
| Conread position: | 165-323 |
| Cow position: | chr6:14850751-14850909 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 69 |
| Conread position: | 165-366 |
| Cow position: | chr6:24031342-24031136 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 84, 0 |
Show alignments to all cow chromosomes.