Cow genome map
| Conread name: | Pig2-34G17 |
| Conread position: | 102-355 |
| Cow position: | chrX:30832838-30833079 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 37, 13 |
| Conread position: | 126-344 |
| Cow position: | chrX:42381112-42381330 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 173 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 23, 55 |
| Conread position: | 136-322 |
| Cow position: | chrX:9425762-9425949 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 61, 11 |
| Conread position: | 136-345 |
| Cow position: | chrX:33493757-33493544 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 61 |
| Conread position: | 146-312 |
| Cow position: | chrX:33000872-33000706 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 103, 73 |
| Conread position: | 146-313 |
| Cow position: | chrX:40809658-40809488 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 146-365 |
| Cow position: | chrX:40826782-40826998 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 57, 96 |
| Conread position: | 146-366 |
| Cow position: | chrX:7053761-7053987 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 221 |
| Conread position: | 146-366 |
| Cow position: | chrX:14924970-14924748 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 153 |
| Conread position: | 146-366 |
| Cow position: | chrX:20030226-20029995 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 146-366 |
| Cow position: | chrX:23563821-23564049 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 146-366 |
| Cow position: | chrX:35609958-35609734 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 146-366 |
| Cow position: | chrX:40269457-40269224 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 183 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 146-366 |
| Cow position: | chrX:45089418-45089185 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 57, 155 |
| Conread position: | 147-307 |
| Cow position: | chrX:8869436-8869601 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 102, 54 |
| Conread position: | 147-321 |
| Cow position: | chrX:46587788-46587611 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 50, 88 |
| Conread position: | 147-328 |
| Cow position: | chrX:34411810-34411625 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 102, 63 |
| Conread position: | 147-354 |
| Cow position: | chrX:7509110-7508899 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 100, 142 |
| Conread position: | 147-364 |
| Cow position: | chrX:7718822-7718603 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 104, 13 |
| Conread position: | 147-364 |
| Cow position: | chrX:20945533-20945318 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 100, 137 |
| Conread position: | 147-366 |
| Cow position: | chrX:25035411-25035639 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 173 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 147-366 |
| Cow position: | chrX:35387934-35388159 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 148-286 |
| Cow position: | chrX:27145590-27145452 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 148-287 |
| Cow position: | chrX:31252385-31252245 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 148-294 |
| Cow position: | chrX:13785396-13785537 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 148-299 |
| Cow position: | chrX:36067980-36067835 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 148-322 |
| Cow position: | chrX:29542252-29542426 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 141 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 148-324 |
| Cow position: | chrX:10252214-10252391 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 102, 87 |
| Conread position: | 148-339 |
| Cow position: | chrX:4750337-4750523 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 154 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 148-339 |
| Cow position: | chrX:46315410-46315604 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 99, 170 |
| Conread position: | 148-343 |
| Cow position: | chrX:19019139-19019339 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 60, 93 |
| Conread position: | 148-345 |
| Cow position: | chrX:38549414-38549217 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 101, 48 |
| Conread position: | 148-345 |
| Cow position: | chrX:44961716-44961516 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 49, 82 |
| Conread position: | 148-350 |
| Cow position: | chrX:11589620-11589828 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 148-350 |
| Cow position: | chrX:37119561-37119363 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 92, 55 |
| Conread position: | 148-351 |
| Cow position: | chrX:40116388-40116188 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 148-354 |
| Cow position: | chrX:2300890-2300693 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 172, 48 |
| Conread position: | 148-354 |
| Cow position: | chrX:17662626-17662837 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 148-354 |
| Cow position: | chrX:39558383-39558588 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 162 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 172, 81 |
| Conread position: | 148-355 |
| Cow position: | chrX:27771994-27772197 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 148-363 |
| Cow position: | chrX:40647953-40647729 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 148-364 |
| Cow position: | chrX:9997368-9997583 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 148-364 |
| Cow position: | chrX:10306641-10306420 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 59, 8 |
| Conread position: | 148-364 |
| Cow position: | chrX:14599500-14599283 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 101, 190 |
| Conread position: | 148-364 |
| Cow position: | chrX:24365858-24366079 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 167 |
| Conread position: | 148-364 |
| Cow position: | chrX:42171329-42171549 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 148-366 |
| Cow position: | chrX:6544222-6544004 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 9 |
| Conread position: | 148-366 |
| Cow position: | chrX:7571870-7571654 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 171, 56 |
| Conread position: | 148-366 |
| Cow position: | chrX:15147220-15147438 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 60, 99 |
| Conread position: | 148-366 |
| Cow position: | chrX:18694957-18695173 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 55 |
| Conread position: | 148-366 |
| Cow position: | chrX:28632516-28632730 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 164, 96 |
| Conread position: | 148-366 |
| Cow position: | chrX:31250354-31250140 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 105, 54 |
| Conread position: | 148-366 |
| Cow position: | chrX:34401965-34401745 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 148-366 |
| Cow position: | chrX:38006797-38007020 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 142 |
| Conread position: | 148-366 |
| Cow position: | chrX:38094554-38094777 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 138 |
| Conread position: | 148-366 |
| Cow position: | chrX:38967615-38967398 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 77 |
| Conread position: | 148-366 |
| Cow position: | chrX:40557714-40557928 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 113 |
| Conread position: | 148-366 |
| Cow position: | chrX:42874951-42874726 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 148-366 |
| Cow position: | chrX:46032753-46032970 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 78, 162 |
| Conread position: | 148-366 |
| Cow position: | chrX:47481769-47481546 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 149-331 |
| Cow position: | chrX:37781145-37781330 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 84, 174 |
| Conread position: | 149-365 |
| Cow position: | chrX:13647819-13648035 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 171, 112 |
| Conread position: | 150-297 |
| Cow position: | chrX:45759357-45759215 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 150-353 |
| Cow position: | chrX:44731563-44731355 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 151-321 |
| Cow position: | chrX:36961607-36961428 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 151-366 |
| Cow position: | chrX:27516493-27516281 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 56, 87 |
| Conread position: | 152-345 |
| Cow position: | chrX:23514052-23514249 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 157 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 126, 152 |
| Conread position: | 152-364 |
| Cow position: | chrX:34502885-34502670 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 166 |
| Conread position: | 153-345 |
| Cow position: | chrX:2206588-2206775 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 55, 68 |
| Conread position: | 153-366 |
| Cow position: | chrX:11806051-11806269 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 153-366 |
| Cow position: | chrX:42338980-42339188 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 167, 50 |
| Conread position: | 154-322 |
| Cow position: | chrX:16324003-16324171 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 48, 84 |
| Conread position: | 158-366 |
| Cow position: | chrX:45430059-45430270 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 161-352 |
| Cow position: | chrX:11938973-11939162 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 153 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 161-366 |
| Cow position: | chrX:22482732-22482941 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 164-354 |
| Cow position: | chrX:17794934-17794745 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 49 |
| Conread position: | 165-364 |
| Cow position: | chrX:35268832-35268640 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 155, 64 |
| Conread position: | 165-364 |
| Cow position: | chrX:37072358-37072156 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 80, 107 |
Show alignments to all cow chromosomes.