Cow genome map
| Conread name: | Pig2-40K14 |
| Conread position: | 315-542 |
| Cow position: | chr10:66874643-66874866 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 126, 34 |
| Conread position: | 321-541 |
| Cow position: | chr10:16683632-16683853 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 129, 18 |
| Conread position: | 324-527 |
| Cow position: | chr10:3115661-3115449 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 55 |
| Conread position: | 325-511 |
| Cow position: | chr10:37884619-37884814 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 325-521 |
| Cow position: | chr10:11317132-11316928 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 91 |
| Conread position: | 325-530 |
| Cow position: | chr10:45606257-45606460 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 53, 73 |
| Conread position: | 326-527 |
| Cow position: | chr10:48255048-48255257 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 25, 35 |
| Conread position: | 326-529 |
| Cow position: | chr10:52244471-52244680 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 51, 95 |
| Conread position: | 326-541 |
| Cow position: | chr10:19590588-19590809 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 59, 94 |
| Conread position: | 328-517 |
| Cow position: | chr10:9341563-9341754 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 15 |
| Conread position: | 329-540 |
| Cow position: | chr10:23948747-23948964 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 28, 14 |
| Conread position: | 331-530 |
| Cow position: | chr10:11403969-11404171 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 62, 47 |
| Conread position: | 332-497 |
| Cow position: | chr10:61113355-61113187 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 11 |
| Conread position: | 332-524 |
| Cow position: | chr10:17553350-17553153 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 105 |
| Conread position: | 332-542 |
| Cow position: | chr10:6038171-6038381 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 13, 79 |
| Conread position: | 332-542 |
| Cow position: | chr10:49624937-49624720 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 45, 86 |
| Conread position: | 332-542 |
| Cow position: | chr10:65071948-65072163 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 43, 68 |
| Conread position: | 332-542 |
| Cow position: | chr10:69226098-69225880 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 40, 92 |
| Conread position: | 333-438 |
| Cow position: | chr10:11086352-11086249 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 333-493 |
| Cow position: | chr10:20952299-20952137 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 44, 87 |
| Conread position: | 333-526 |
| Cow position: | chr10:68251981-68251786 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 78 |
| Conread position: | 333-527 |
| Cow position: | chr10:22479558-22479754 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 45, 78 |
| Conread position: | 336-541 |
| Cow position: | chr10:24786274-24786062 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 45, 86 |
| Conread position: | 339-492 |
| Cow position: | chr10:42454282-42454123 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 71 |
| Conread position: | 339-526 |
| Cow position: | chr10:15391653-15391460 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 15, 81 |
| Conread position: | 339-527 |
| Cow position: | chr10:10124506-10124312 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 39, 82 |
| Conread position: | 339-527 |
| Cow position: | chr10:37707251-37707054 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 39, 83 |
| Conread position: | 339-530 |
| Cow position: | chr10:6568388-6568202 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 70 |
| Conread position: | 339-530 |
| Cow position: | chr10:8412891-8413086 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 339-530 |
| Cow position: | chr10:48741001-48741195 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 38, 69 |
| Conread position: | 340-448 |
| Cow position: | chr10:42005434-42005544 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 30, 72 |
| Conread position: | 340-521 |
| Cow position: | chr10:38518475-38518654 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 110, 73 |
| Conread position: | 341-524 |
| Cow position: | chr10:23096620-23096809 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 109, 67 |
| Conread position: | 343-477 |
| Cow position: | chr10:11497380-11497239 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 70 |
| Conread position: | 343-493 |
| Cow position: | chr10:16386055-16386203 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 343-495 |
| Cow position: | chr10:52889079-52889235 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 33, 65 |
| Conread position: | 343-502 |
| Cow position: | chr10:61426576-61426742 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 343-514 |
| Cow position: | chr10:52069816-52069993 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 35, 75 |
| Conread position: | 343-515 |
| Cow position: | chr10:32560861-32560681 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 11, 71 |
| Conread position: | 343-516 |
| Cow position: | chr10:68566331-68566162 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 107, 35 |
| Conread position: | 343-526 |
| Cow position: | chr10:23404357-23404171 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 35, 76 |
| Conread position: | 343-530 |
| Cow position: | chr10:1108304-1108499 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 33, 78 |
| Conread position: | 343-530 |
| Cow position: | chr10:9794506-9794695 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 343-532 |
| Cow position: | chr10:38429393-38429582 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 35, 65 |
| Conread position: | 343-542 |
| Cow position: | chr10:11032351-11032538 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 343-542 |
| Cow position: | chr10:19704353-19704560 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 35, 76 |
| Conread position: | 343-542 |
| Cow position: | chr10:31368576-31368779 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 57 |
| Conread position: | 343-542 |
| Cow position: | chr10:45728783-45729001 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 344-512 |
| Cow position: | chr10:26145253-26145427 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 28, 60 |
| Conread position: | 344-512 |
| Cow position: | chr10:33240524-33240697 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 32, 77 |
| Conread position: | 344-518 |
| Cow position: | chr10:30741532-30741357 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 146 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 99, 64 |
| Conread position: | 344-542 |
| Cow position: | chr10:41984729-41984934 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 28, 77 |
| Conread position: | 345-529 |
| Cow position: | chr10:46067253-46067071 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 105, 30 |
| Conread position: | 345-530 |
| Cow position: | chr10:19126759-19126939 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 73 |
| Conread position: | 346-526 |
| Cow position: | chr10:29689177-29689362 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 346-531 |
| Cow position: | chr10:2406977-2407167 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 41, 75 |
| Conread position: | 349-527 |
| Cow position: | chr10:62517035-62516850 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 28, 62 |
| Conread position: | 351-530 |
| Cow position: | chr10:20109800-20109976 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 23, 57 |
| Conread position: | 353-524 |
| Cow position: | chr10:56705437-56705614 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 24, 60 |
| Conread position: | 353-530 |
| Cow position: | chr10:60388614-60388800 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 353-542 |
| Cow position: | chr10:28038789-28038981 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 97, 64 |
| Conread position: | 355-497 |
| Cow position: | chr10:49586319-49586469 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 55 |
| Conread position: | 355-530 |
| Cow position: | chr10:16649787-16649961 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 95, 53 |
| Conread position: | 357-516 |
| Cow position: | chr10:36498347-36498191 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 93, 15 |
| Conread position: | 360-517 |
| Cow position: | chr10:58746109-58746274 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 47 |
| Conread position: | 360-530 |
| Cow position: | chr10:8330755-8330582 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 53, 133 |
| Conread position: | 364-526 |
| Cow position: | chr10:65130351-65130514 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 13, 53 |
| Conread position: | 365-530 |
| Cow position: | chr10:6490631-6490799 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 13, 50 |
| Conread position: | 367-530 |
| Cow position: | chr10:28492337-28492503 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 82, 36 |
| Conread position: | 367-542 |
| Cow position: | chr10:52589551-52589736 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 86, 49 |
| Conread position: | 372-478 |
| Cow position: | chr10:64364342-64364233 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 78, 36 |
| Conread position: | 372-530 |
| Cow position: | chr10:27538624-27538466 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 78, 63 |
| Conread position: | 372-530 |
| Cow position: | chr10:38449188-38449346 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 78, 36 |
| Conread position: | 372-542 |
| Cow position: | chr10:15873952-15874121 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 78, 23 |
| Conread position: | 372-542 |
| Cow position: | chr10:26620436-26620609 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 373-527 |
| Cow position: | chr10:40646790-40646648 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 373-540 |
| Cow position: | chr10:58608226-58608059 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 78, 43 |
| Conread position: | 376-530 |
| Cow position: | chr10:6921839-6921689 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 74, 29 |
| Conread position: | 386-526 |
| Cow position: | chr10:1478321-1478464 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 387-542 |
| Cow position: | chr10:30449953-30450111 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 29 |
| Conread position: | 405-537 |
| Cow position: | chr10:31855429-31855291 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 419-542 |
| Cow position: | chr10:25293867-25293740 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
Show alignments to all cow chromosomes.