Cow genome map
| Conread name: | Pig2-40K14 |
| Conread position: | 301-527 |
| Cow position: | chr12:32413695-32413467 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 46, 69 |
| Conread position: | 318-518 |
| Cow position: | chr12:43671872-43671670 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 318-542 |
| Cow position: | chr12:34161590-34161352 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 31 |
| Conread position: | 320-527 |
| Cow position: | chr12:25312207-25312415 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 24, 79 |
| Conread position: | 322-542 |
| Cow position: | chr12:33458304-33458087 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 127, 21 |
| Conread position: | 324-520 |
| Cow position: | chr12:39781177-39781379 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 48, 88 |
| Conread position: | 324-527 |
| Cow position: | chr12:29448807-29448600 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 325-462 |
| Cow position: | chr12:9780113-9780252 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 118, 80 |
| Conread position: | 326-530 |
| Cow position: | chr12:10763426-10763207 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 327-530 |
| Cow position: | chr12:44908175-44907967 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 25 |
| Conread position: | 328-524 |
| Cow position: | chr12:10846502-10846691 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 121, 40 |
| Conread position: | 328-527 |
| Cow position: | chr12:4583100-4582899 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 50, 21 |
| Conread position: | 328-527 |
| Cow position: | chr12:34465840-34466050 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 50, 201 |
| Conread position: | 328-542 |
| Cow position: | chr12:18768913-18769132 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 51, 92 |
| Conread position: | 329-526 |
| Cow position: | chr12:40931457-40931658 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 53, 92 |
| Conread position: | 331-513 |
| Cow position: | chr12:34090280-34090096 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 9, 81 |
| Conread position: | 331-542 |
| Cow position: | chr12:47804309-47804095 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 332-448 |
| Cow position: | chr12:38096279-38096159 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 78 |
| Conread position: | 332-481 |
| Cow position: | chr12:24681976-24681818 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 83 |
| Conread position: | 332-537 |
| Cow position: | chr12:31198922-31198710 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 14, 88 |
| Conread position: | 334-521 |
| Cow position: | chr12:15230667-15230857 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 71 |
| Conread position: | 335-516 |
| Cow position: | chr12:16205876-16205692 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 73 |
| Conread position: | 336-498 |
| Cow position: | chr12:7274553-7274717 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 18, 69 |
| Conread position: | 336-518 |
| Cow position: | chr12:9229346-9229538 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 339-518 |
| Cow position: | chr12:7996559-7996375 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 70 |
| Conread position: | 339-526 |
| Cow position: | chr12:1883390-1883574 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 110, 69 |
| Conread position: | 339-526 |
| Cow position: | chr12:42918612-42918431 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 40, 74 |
| Conread position: | 339-530 |
| Cow position: | chr12:5497681-5497871 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 37, 69 |
| Conread position: | 339-542 |
| Cow position: | chr12:24559508-24559296 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 15, 83 |
| Conread position: | 340-526 |
| Cow position: | chr12:45225841-45226034 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 17, 80 |
| Conread position: | 340-542 |
| Cow position: | chr12:5680831-5680621 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 36, 81 |
| Conread position: | 340-542 |
| Cow position: | chr12:31429426-31429630 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 37 |
| Conread position: | 343-518 |
| Cow position: | chr12:42478154-42477974 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 74 |
| Conread position: | 343-521 |
| Cow position: | chr12:16850771-16850954 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 67 |
| Conread position: | 343-525 |
| Cow position: | chr12:5538829-5539010 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 106, 49 |
| Conread position: | 343-525 |
| Cow position: | chr12:34849715-34849895 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 73 |
| Conread position: | 343-525 |
| Cow position: | chr12:34852352-34852532 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 36, 73 |
| Conread position: | 343-527 |
| Cow position: | chr12:11080955-11081145 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 31, 79 |
| Conread position: | 343-530 |
| Cow position: | chr12:25606851-25606655 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 70 |
| Conread position: | 343-537 |
| Cow position: | chr12:27055747-27055551 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 33, 67 |
| Conread position: | 343-542 |
| Cow position: | chr12:7645666-7645863 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 76 |
| Conread position: | 344-517 |
| Cow position: | chr12:25933824-25933648 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 344-526 |
| Cow position: | chr12:5658603-5658792 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 28, 66 |
| Conread position: | 344-528 |
| Cow position: | chr12:3816630-3816439 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 33, 69 |
| Conread position: | 344-541 |
| Cow position: | chr12:30065076-30064879 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 65 |
| Conread position: | 346-527 |
| Cow position: | chr12:13657607-13657790 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 105, 70 |
| Conread position: | 348-542 |
| Cow position: | chr12:3616141-3615940 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 160 |
| Conread position: | 349-524 |
| Cow position: | chr12:16543440-16543625 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 350-526 |
| Cow position: | chr12:43104638-43104468 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 99, 58 |
| Conread position: | 351-532 |
| Cow position: | chr12:41642568-41642380 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 19, 70 |
| Conread position: | 354-526 |
| Cow position: | chr12:31258140-31257974 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 356-533 |
| Cow position: | chr12:48425841-48425662 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 22, 54 |
| Conread position: | 372-529 |
| Cow position: | chr12:30596579-30596419 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 79, 44 |
| Conread position: | 372-530 |
| Cow position: | chr12:34242215-34242375 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 80, 44 |
| Conread position: | 373-537 |
| Cow position: | chr12:31528746-31528912 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 77, 43 |
| Conread position: | 374-524 |
| Cow position: | chr12:12331401-12331552 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 76, 42 |
Show alignments to all cow chromosomes.