Cow genome map
| Conread name: | Pig2-40K14 |
| Conread position: | 299-542 |
| Cow position: | chr13:38631813-38631569 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 38, 74 |
| Conread position: | 302-537 |
| Cow position: | chr13:9664823-9665063 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 52, 96 |
| Conread position: | 307-527 |
| Cow position: | chr13:6079655-6079418 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 310-542 |
| Cow position: | chr13:32718092-32717856 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 68, 14 |
| Conread position: | 311-530 |
| Cow position: | chr13:6621815-6621595 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 136, 47 |
| Conread position: | 323-528 |
| Cow position: | chr13:32773146-32773352 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 55, 73 |
| Conread position: | 324-532 |
| Cow position: | chr13:22227967-22227762 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 89 |
| Conread position: | 325-537 |
| Cow position: | chr13:17796152-17796371 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 53, 86 |
| Conread position: | 325-542 |
| Cow position: | chr13:11794236-11794448 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 125, 52 |
| Conread position: | 327-519 |
| Cow position: | chr13:18665525-18665721 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 51, 94 |
| Conread position: | 332-490 |
| Cow position: | chr13:25206910-25207070 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 118, 84 |
| Conread position: | 332-525 |
| Cow position: | chr13:1958798-1958999 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 17, 91 |
| Conread position: | 332-526 |
| Cow position: | chr13:11768253-11768051 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 39, 81 |
| Conread position: | 332-530 |
| Cow position: | chr13:34761476-34761673 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 47, 85 |
| Conread position: | 332-542 |
| Cow position: | chr13:25537411-25537632 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 43, 84 |
| Conread position: | 332-542 |
| Cow position: | chr13:33161203-33160989 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 90 |
| Conread position: | 333-532 |
| Cow position: | chr13:18550797-18550999 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 45, 88 |
| Conread position: | 333-542 |
| Cow position: | chr13:49200430-49200642 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 19, 78 |
| Conread position: | 334-496 |
| Cow position: | chr13:57341496-57341330 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 38, 9 |
| Conread position: | 334-518 |
| Cow position: | chr13:1558720-1558530 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 87 |
| Conread position: | 334-527 |
| Cow position: | chr13:54094604-54094804 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 44, 15 |
| Conread position: | 334-530 |
| Cow position: | chr13:13578240-13578036 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 42, 9 |
| Conread position: | 334-537 |
| Cow position: | chr13:33281803-33282008 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 10, 25 |
| Conread position: | 335-521 |
| Cow position: | chr13:47188237-47188424 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 19, 74 |
| Conread position: | 336-541 |
| Cow position: | chr13:29820411-29820199 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 42, 85 |
| Conread position: | 337-537 |
| Cow position: | chr13:12521982-12521775 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 41, 84 |
| Conread position: | 337-541 |
| Cow position: | chr13:34995533-34995319 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 41, 85 |
| Conread position: | 339-504 |
| Cow position: | chr13:49457483-49457655 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 36, 73 |
| Conread position: | 339-523 |
| Cow position: | chr13:2803267-2803462 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 72 |
| Conread position: | 339-524 |
| Cow position: | chr13:47502910-47502724 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 33, 72 |
| Conread position: | 339-527 |
| Cow position: | chr13:20839366-20839560 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 19 |
| Conread position: | 339-530 |
| Cow position: | chr13:22075469-22075666 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 38, 82 |
| Conread position: | 340-524 |
| Cow position: | chr13:10932355-10932541 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 33, 90 |
| Conread position: | 340-527 |
| Cow position: | chr13:7010275-7010461 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 38, 78 |
| Conread position: | 340-540 |
| Cow position: | chr13:661837-661638 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 81 |
| Conread position: | 343-526 |
| Cow position: | chr13:20180218-20180406 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 35, 70 |
| Conread position: | 343-527 |
| Cow position: | chr13:12745475-12745665 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 343-530 |
| Cow position: | chr13:32657185-32657376 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 107, 27 |
| Conread position: | 343-533 |
| Cow position: | chr13:8822672-8822862 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 35, 59 |
| Conread position: | 343-538 |
| Cow position: | chr13:31852570-31852767 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 34, 65 |
| Conread position: | 343-542 |
| Cow position: | chr13:15091106-15090902 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 14, 78 |
| Conread position: | 343-542 |
| Cow position: | chr13:47322607-47322401 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 35, 21 |
| Conread position: | 344-505 |
| Cow position: | chr13:26523133-26522965 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 34, 24 |
| Conread position: | 344-527 |
| Cow position: | chr13:15945279-15945475 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 344-530 |
| Cow position: | chr13:46430490-46430312 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 106, 34 |
| Conread position: | 344-537 |
| Cow position: | chr13:29034621-29034804 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 344-542 |
| Cow position: | chr13:9161720-9161931 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 33, 78 |
| Conread position: | 345-542 |
| Cow position: | chr13:20466481-20466277 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 33, 76 |
| Conread position: | 346-498 |
| Cow position: | chr13:58762795-58762636 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 28, 67 |
| Conread position: | 353-521 |
| Cow position: | chr13:25435311-25435135 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 24, 68 |
| Conread position: | 353-526 |
| Cow position: | chr13:43156043-43155863 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 26, 68 |
| Conread position: | 353-527 |
| Cow position: | chr13:43167219-43167039 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 25, 58 |
| Conread position: | 353-542 |
| Cow position: | chr13:32904592-32904787 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 44 |
| Conread position: | 355-497 |
| Cow position: | chr13:21403587-21403446 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 95, 16 |
| Conread position: | 361-530 |
| Cow position: | chr13:60651081-60650908 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 91, 46 |
| Conread position: | 365-542 |
| Cow position: | chr13:46312182-46312009 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 42 |
| Conread position: | 367-527 |
| Cow position: | chr13:20825863-20826019 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 82, 50 |
| Conread position: | 368-518 |
| Cow position: | chr13:24280090-24280241 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 82, 5 |
| Conread position: | 372-528 |
| Cow position: | chr13:32535492-32535652 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 47 |
| Conread position: | 372-537 |
| Cow position: | chr13:12233617-12233446 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 77, 36 |
| Conread position: | 372-537 |
| Cow position: | chr13:32167474-32167312 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 372-542 |
| Cow position: | chr13:21628044-21627876 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 149, 44 |
| Conread position: | 372-542 |
| Cow position: | chr13:49847762-49847931 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 78, 38 |
| Conread position: | 372-542 |
| Cow position: | chr13:52569167-52568994 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 373-525 |
| Cow position: | chr13:58621107-58620956 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 77, 43 |
| Conread position: | 374-526 |
| Cow position: | chr13:52748956-52748806 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 73, 43 |
| Conread position: | 376-530 |
| Cow position: | chr13:53788268-53788111 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 40 |
| Conread position: | 377-529 |
| Cow position: | chr13:14717497-14717344 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 75, 39 |
| Conread position: | 390-527 |
| Cow position: | chr13:3016319-3016182 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 26 |
Show alignments to all cow chromosomes.