Cow genome map
| Conread name: | Pig2-40K14 |
| Conread position: | 300-537 |
| Cow position: | chr21:8671676-8671442 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 50, 22 |
| Conread position: | 306-530 |
| Cow position: | chr21:31662750-31662519 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 325-542 |
| Cow position: | chr21:18135605-18135832 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 45, 101 |
| Conread position: | 327-537 |
| Cow position: | chr21:7483091-7483304 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 43 |
| Conread position: | 327-542 |
| Cow position: | chr21:44754526-44754740 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 23, 85 |
| Conread position: | 329-495 |
| Cow position: | chr21:12972741-12972916 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 14 |
| Conread position: | 329-530 |
| Cow position: | chr21:45356095-45355885 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 25, 93 |
| Conread position: | 331-448 |
| Cow position: | chr21:36469911-36469796 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 18 |
| Conread position: | 332-521 |
| Cow position: | chr21:25286771-25286578 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 54, 89 |
| Conread position: | 332-540 |
| Cow position: | chr21:8207033-8206814 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 332-542 |
| Cow position: | chr21:38901041-38900814 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 101 |
| Conread position: | 334-530 |
| Cow position: | chr21:47715290-47715494 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 44, 77 |
| Conread position: | 335-518 |
| Cow position: | chr21:23800878-23801064 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 10, 74 |
| Conread position: | 335-527 |
| Cow position: | chr21:33947001-33947194 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 46, 84 |
| Conread position: | 336-498 |
| Cow position: | chr21:49661588-49661751 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 42, 7 |
| Conread position: | 337-527 |
| Cow position: | chr21:37235635-37235440 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 17, 82 |
| Conread position: | 337-542 |
| Cow position: | chr21:13395851-13395631 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 41, 6 |
| Conread position: | 339-516 |
| Cow position: | chr21:2413299-2413119 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 111, 69 |
| Conread position: | 339-517 |
| Cow position: | chr21:17428747-17428561 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 15, 75 |
| Conread position: | 339-518 |
| Cow position: | chr21:17806888-17807069 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 8, 81 |
| Conread position: | 339-521 |
| Cow position: | chr21:9939939-9940127 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 39, 82 |
| Conread position: | 339-526 |
| Cow position: | chr21:15741833-15742033 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 11, 83 |
| Conread position: | 339-532 |
| Cow position: | chr21:4099116-4098923 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 40, 67 |
| Conread position: | 340-530 |
| Cow position: | chr21:25800644-25800452 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 110, 68 |
| Conread position: | 340-541 |
| Cow position: | chr21:31662248-31662045 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 110, 76 |
| Conread position: | 341-532 |
| Cow position: | chr21:21181425-21181230 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 33, 80 |
| Conread position: | 342-526 |
| Cow position: | chr21:24674963-24674776 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 66 |
| Conread position: | 343-484 |
| Cow position: | chr21:6012667-6012815 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 343-507 |
| Cow position: | chr21:41197806-41197970 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 31, 70 |
| Conread position: | 343-509 |
| Cow position: | chr21:26147324-26147151 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 35, 70 |
| Conread position: | 343-524 |
| Cow position: | chr21:6388235-6388057 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 98, 56 |
| Conread position: | 343-542 |
| Cow position: | chr21:13755027-13754826 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 74 |
| Conread position: | 343-542 |
| Cow position: | chr21:46241994-46242194 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 35, 78 |
| Conread position: | 344-508 |
| Cow position: | chr21:22398393-22398236 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 99, 55 |
| Conread position: | 344-521 |
| Cow position: | chr21:23397607-23397785 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 60 |
| Conread position: | 344-528 |
| Cow position: | chr21:12301266-12301457 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 68 |
| Conread position: | 345-496 |
| Cow position: | chr21:44220610-44220449 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 9, 69 |
| Conread position: | 345-517 |
| Cow position: | chr21:46607349-46607522 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 31, 76 |
| Conread position: | 345-528 |
| Cow position: | chr21:4276359-4276548 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 43, 76 |
| Conread position: | 345-542 |
| Cow position: | chr21:39509145-39509346 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 33, 76 |
| Conread position: | 347-528 |
| Cow position: | chr21:36371723-36371542 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 31, 69 |
| Conread position: | 347-530 |
| Cow position: | chr21:15239519-15239335 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 62 |
| Conread position: | 348-518 |
| Cow position: | chr21:23397424-23397598 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 24, 60 |
| Conread position: | 351-526 |
| Cow position: | chr21:23768102-23767927 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 96, 13 |
| Conread position: | 351-526 |
| Cow position: | chr21:23786263-23786088 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 96, 13 |
| Conread position: | 353-527 |
| Cow position: | chr21:13418003-13418175 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 97, 55 |
| Conread position: | 353-530 |
| Cow position: | chr21:34740081-34739896 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 25, 68 |
| Conread position: | 355-530 |
| Cow position: | chr21:34564985-34565157 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 95, 53 |
| Conread position: | 355-542 |
| Cow position: | chr21:31576722-31576537 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 62 |
| Conread position: | 356-530 |
| Cow position: | chr21:4723714-4723533 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 22, 55 |
| Conread position: | 356-542 |
| Cow position: | chr21:12087829-12087629 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 65 |
| Conread position: | 357-530 |
| Cow position: | chr21:34160175-34160002 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 93, 59 |
| Conread position: | 367-503 |
| Cow position: | chr21:47823053-47823189 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 32 |
| Conread position: | 367-542 |
| Cow position: | chr21:18941617-18941794 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 76, 46 |
| Conread position: | 372-512 |
| Cow position: | chr21:32574933-32574800 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 372-517 |
| Cow position: | chr21:22353025-22353172 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 71, 36 |
| Conread position: | 372-521 |
| Cow position: | chr21:26753703-26753552 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 78, 24 |
| Conread position: | 372-524 |
| Cow position: | chr21:35997384-35997235 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 372-530 |
| Cow position: | chr21:9353660-9353499 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 381-527 |
| Cow position: | chr21:24698683-24698536 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 9 |
| Conread position: | 385-506 |
| Cow position: | chr21:16836750-16836876 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 385-506 |
| Cow position: | chr21:44789155-44789278 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 57, 21 |
Show alignments to all cow chromosomes.