Cow genome map
| Conread name: | Pig2-41K08 |
| Conread position: | 1-230 |
| Cow position: | chr21:45845471-45845239 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 101, 29 |
| Conread position: | 1-409 |
| Cow position: | chr21:4717636-4718043 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 111, 14 |
| Conread position: | 1-431 |
| Cow position: | chr21:3922956-3923401 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-431 |
| Cow position: | chr21:4899273-4898826 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-431 |
| Cow position: | chr21:42916486-42916929 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-432 |
| Cow position: | chr21:1195232-1195675 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 288 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-432 |
| Cow position: | chr21:13112698-13112254 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 292 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 33, 11 |
| Conread position: | 1-433 |
| Cow position: | chr21:10852960-10853402 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-433 |
| Cow position: | chr21:44763267-44762824 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-433 |
| Cow position: | chr21:47648030-47648477 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 34, 14 |
| Conread position: | 1-434 |
| Cow position: | chr21:47976702-47977148 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-440 |
| Cow position: | chr21:148842-149294 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 2-431 |
| Cow position: | chr21:15398284-15397838 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 9, 76 |
| Conread position: | 2-440 |
| Cow position: | chr21:3109628-3109194 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 34, 9 |
| Conread position: | 4-430 |
| Cow position: | chr21:4138358-4137925 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 284 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 67, 21 |
| Conread position: | 4-434 |
| Cow position: | chr21:4078744-4079181 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 279 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 27, 77 |
| Conread position: | 5-318 |
| Cow position: | chr21:21051426-21051749 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 5-430 |
| Cow position: | chr21:40082255-40082671 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 128, 14 |
| Conread position: | 5-433 |
| Cow position: | chr21:1285554-1285118 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 279 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 28, 53 |
| Conread position: | 5-434 |
| Cow position: | chr21:27126028-27125579 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 30, 73 |
| Conread position: | 6-414 |
| Cow position: | chr21:33662989-33663403 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 9 |
| Conread position: | 9-256 |
| Cow position: | chr21:35781162-35780910 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 16, 27 |
| Conread position: | 9-424 |
| Cow position: | chr21:21786371-21786778 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 9-431 |
| Cow position: | chr21:13285623-13286038 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 286 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 18, 66 |
| Conread position: | 9-433 |
| Cow position: | chr21:35390445-35390011 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 274 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 28, 286 |
| Conread position: | 12-431 |
| Cow position: | chr21:27148849-27148416 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 23, 63 |
| Conread position: | 12-433 |
| Cow position: | chr21:5019849-5020283 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 11, 63 |
| Conread position: | 18-395 |
| Cow position: | chr21:42861444-42861070 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 259 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 20, 159 |
| Conread position: | 19-438 |
| Cow position: | chr21:11328186-11327769 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 16, 60 |
| Conread position: | 24-446 |
| Cow position: | chr21:38945959-38945538 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 11, 50 |
| Conread position: | 26-429 |
| Cow position: | chr21:46291100-46291515 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 272 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 69, 49 |
| Conread position: | 33-431 |
| Cow position: | chr21:4864600-4864210 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 73, 40 |
| Conread position: | 33-431 |
| Cow position: | chr21:6966745-6966337 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 256 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 73, 40 |
| Conread position: | 33-434 |
| Cow position: | chr21:44531922-44532322 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 280 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 68, 40 |
| Conread position: | 34-432 |
| Cow position: | chr21:25189370-25189784 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 73, 38 |
| Conread position: | 34-433 |
| Cow position: | chr21:26401038-26400627 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 73, 38 |
| Conread position: | 34-433 |
| Cow position: | chr21:30564479-30564891 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 71, 38 |
| Conread position: | 34-440 |
| Cow position: | chr21:33256283-33256700 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 73, 38 |
| Conread position: | 35-256 |
| Cow position: | chr21:3116268-3116485 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 60, 30 |
| Conread position: | 35-322 |
| Cow position: | chr21:219192-219495 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 71, 36 |
| Conread position: | 35-431 |
| Cow position: | chr21:34593083-34592667 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 278 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 71, 37 |
| Conread position: | 35-433 |
| Cow position: | chr21:29726912-29727318 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 276 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 36-434 |
| Cow position: | chr21:5010744-5010333 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 77, 36 |
| Conread position: | 39-437 |
| Cow position: | chr21:28056048-28056455 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 61, 36 |
| Conread position: | 41-450 |
| Cow position: | chr21:30555354-30554943 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 98, 32 |
| Conread position: | 44-363 |
| Cow position: | chr21:39079509-39079190 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 62, 32 |
| Conread position: | 50-431 |
| Cow position: | chr21:22197593-22197232 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 63, 12 |
| Conread position: | 51-433 |
| Cow position: | chr21:28916227-28915833 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 245 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 56, 21 |
| Conread position: | 52-440 |
| Cow position: | chr21:30596347-30595944 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 165 |
| Conread position: | 54-444 |
| Cow position: | chr21:24886399-24886804 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 296 |
| Conread position: | 59-350 |
| Cow position: | chr21:34551126-34550831 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 45, 16 |
| Conread position: | 108-444 |
| Cow position: | chr21:33317566-33317216 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 105 |
| Conread position: | 109-413 |
| Cow position: | chr21:15924986-15925294 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 11 |
Show alignments to all cow chromosomes.