Cow genome map
| Conread name: | Pig2-41K08 |
| Conread position: | 1-431 |
| Cow position: | chr5:4435151-4434712 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-431 |
| Cow position: | chr5:4964023-4963586 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-431 |
| Cow position: | chr5:6586111-6585668 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 283 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-431 |
| Cow position: | chr5:37379443-37379881 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-432 |
| Cow position: | chr5:49222145-49221699 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 15 |
| Conread position: | 1-433 |
| Cow position: | chr5:1339571-1339128 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-433 |
| Cow position: | chr5:2916815-2917258 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-433 |
| Cow position: | chr5:3788577-3789022 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-433 |
| Cow position: | chr5:8177458-8177903 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 283 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-433 |
| Cow position: | chr5:18559053-18558608 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-433 |
| Cow position: | chr5:25929337-25928903 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 34, 10 |
| Conread position: | 1-433 |
| Cow position: | chr5:48806100-48805656 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-433 |
| Cow position: | chr5:64779654-64779213 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-434 |
| Cow position: | chr5:24644510-24644073 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 10 |
| Conread position: | 1-436 |
| Cow position: | chr5:37734723-37735172 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 2-284 |
| Cow position: | chr5:39392714-39392430 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 73 |
| Conread position: | 2-429 |
| Cow position: | chr5:29673599-29674029 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 76 |
| Conread position: | 2-433 |
| Cow position: | chr5:49521067-49521504 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 279 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 21, 73 |
| Conread position: | 2-434 |
| Cow position: | chr5:46003293-46002854 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 275 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 9, 75 |
| Conread position: | 2-440 |
| Cow position: | chr5:3501777-3501325 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 2-440 |
| Cow position: | chr5:12920749-12921200 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 285 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 33, 10 |
| Conread position: | 3-433 |
| Cow position: | chr5:40347925-40347486 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 292 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 104, 22 |
| Conread position: | 4-395 |
| Cow position: | chr5:63778062-63778462 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 102, 11 |
| Conread position: | 5-270 |
| Cow position: | chr5:72397525-72397792 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 5-360 |
| Cow position: | chr5:32365122-32365483 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 27, 69 |
| Conread position: | 5-433 |
| Cow position: | chr5:26057486-26057923 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 277 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 28, 75 |
| Conread position: | 5-433 |
| Cow position: | chr5:48226220-48225778 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 14, 72 |
| Conread position: | 5-433 |
| Cow position: | chr5:57929015-57928578 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 283 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 5-433 |
| Cow position: | chr5:59278498-59278935 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 30, 73 |
| Conread position: | 8-201 |
| Cow position: | chr5:21221414-21221220 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 123, 11 |
| Conread position: | 8-440 |
| Cow position: | chr5:51166947-51166505 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 281 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 6, 20 |
| Conread position: | 9-433 |
| Cow position: | chr5:24101007-24101444 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 26, 65 |
| Conread position: | 9-433 |
| Cow position: | chr5:46735923-46735482 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 281 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 26, 65 |
| Conread position: | 9-434 |
| Cow position: | chr5:55833487-55833046 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 291 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 96, 58 |
| Conread position: | 11-390 |
| Cow position: | chr5:54327055-54327448 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 257 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 95, 19 |
| Conread position: | 12-431 |
| Cow position: | chr5:26076841-26076409 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 11, 64 |
| Conread position: | 12-431 |
| Cow position: | chr5:29633788-29634221 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 275 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 23, 63 |
| Conread position: | 12-431 |
| Cow position: | chr5:30156718-30157152 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 23, 63 |
| Conread position: | 12-431 |
| Cow position: | chr5:50688172-50688605 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 63 |
| Conread position: | 12-431 |
| Cow position: | chr5:52823848-52823414 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 64 |
| Conread position: | 20-440 |
| Cow position: | chr5:18884211-18883789 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 293 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 69, 56 |
| Conread position: | 20-440 |
| Cow position: | chr5:57364394-57363980 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 286 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 118, 56 |
| Conread position: | 21-433 |
| Cow position: | chr5:3200723-3201146 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 33-199 |
| Cow position: | chr5:58342491-58342661 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 73, 37 |
| Conread position: | 33-324 |
| Cow position: | chr5:4016499-4016201 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 40 |
| Conread position: | 33-369 |
| Cow position: | chr5:21786311-21785967 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 66, 17 |
| Conread position: | 33-427 |
| Cow position: | chr5:25902086-25901679 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 74, 39 |
| Conread position: | 33-431 |
| Cow position: | chr5:443928-443517 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 73, 40 |
| Conread position: | 33-431 |
| Cow position: | chr5:10513891-10513481 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 260 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 64, 40 |
| Conread position: | 33-431 |
| Cow position: | chr5:46778900-46779308 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 68, 40 |
| Conread position: | 33-431 |
| Cow position: | chr5:51745604-51746015 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 29, 41 |
| Conread position: | 33-431 |
| Cow position: | chr5:58198393-58198802 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 262 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 81, 40 |
| Conread position: | 33-432 |
| Cow position: | chr5:42043289-42043687 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 74, 37 |
| Conread position: | 33-432 |
| Cow position: | chr5:42507141-42507553 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 74, 37 |
| Conread position: | 33-433 |
| Cow position: | chr5:27178030-27178442 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 265 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 74, 43 |
| Conread position: | 33-433 |
| Cow position: | chr5:48534266-48534650 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 64, 44 |
| Conread position: | 33-433 |
| Cow position: | chr5:57614788-57614397 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 73, 40 |
| Conread position: | 34-433 |
| Cow position: | chr5:30581722-30582129 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 34-433 |
| Cow position: | chr5:47342099-47342508 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 264 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 73, 38 |
| Conread position: | 34-440 |
| Cow position: | chr5:18704045-18704461 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 73, 42 |
| Conread position: | 35-298 |
| Cow position: | chr5:47080662-47080929 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 67, 19 |
| Conread position: | 35-433 |
| Cow position: | chr5:10097666-10097261 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 72, 18 |
| Conread position: | 35-433 |
| Cow position: | chr5:15361550-15361959 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 72, 27 |
| Conread position: | 35-434 |
| Cow position: | chr5:49755937-49755530 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 65, 37 |
| Conread position: | 36-434 |
| Cow position: | chr5:68256147-68255737 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 95, 29 |
| Conread position: | 39-433 |
| Cow position: | chr5:28948353-28947946 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 39-433 |
| Cow position: | chr5:29743168-29742762 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 56, 31 |
| Conread position: | 41-440 |
| Cow position: | chr5:40791242-40791642 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 65, 28 |
| Conread position: | 54-355 |
| Cow position: | chr5:14523401-14523090 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 17, 8 |
| Conread position: | 56-433 |
| Cow position: | chr5:5716644-5716259 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 57-426 |
| Cow position: | chr5:74475659-74476035 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 261 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 57-439 |
| Cow position: | chr5:54622034-54622420 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 112-359 |
| Cow position: | chr5:40772731-40772491 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 150, 7 |
| Conread position: | 142-434 |
| Cow position: | chr5:38285793-38286080 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 133, 148 |
Show alignments to all cow chromosomes.