Cow genome map
| Conread name: | Pig2-41K08 |
| Conread position: | 1-424 |
| Cow position: | chr6:28845641-28845211 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 285 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 72, 24 |
| Conread position: | 1-427 |
| Cow position: | chr6:2876543-2876104 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-431 |
| Cow position: | chr6:2377192-2377635 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-431 |
| Cow position: | chr6:13308897-13308454 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 278 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 10, 25 |
| Conread position: | 1-431 |
| Cow position: | chr6:51149429-51149873 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-431 |
| Cow position: | chr6:65820094-65819649 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-432 |
| Cow position: | chr6:36530775-36531213 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 11 |
| Conread position: | 1-433 |
| Cow position: | chr6:49084-48639 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-433 |
| Cow position: | chr6:8756328-8755884 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 288 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-433 |
| Cow position: | chr6:16592461-16592898 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 33, 11 |
| Conread position: | 1-433 |
| Cow position: | chr6:24241779-24242224 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 290 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-433 |
| Cow position: | chr6:25791210-25790766 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-433 |
| Cow position: | chr6:39435433-39434983 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 292 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-433 |
| Cow position: | chr6:40159011-40158581 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 1-433 |
| Cow position: | chr6:43791084-43790645 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-433 |
| Cow position: | chr6:55539781-55539337 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-433 |
| Cow position: | chr6:68029665-68030112 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 1-436 |
| Cow position: | chr6:60875786-60876235 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 1-440 |
| Cow position: | chr6:5947287-5946836 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 286 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 2-432 |
| Cow position: | chr6:67212287-67211848 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 275 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 9, 74 |
| Conread position: | 2-433 |
| Cow position: | chr6:39999971-39999524 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 9, 75 |
| Conread position: | 2-433 |
| Cow position: | chr6:63405294-63405744 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 77 |
| Conread position: | 2-434 |
| Cow position: | chr6:39332043-39331597 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 73 |
| Conread position: | 2-440 |
| Cow position: | chr6:328874-328418 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 76 |
| Conread position: | 3-308 |
| Cow position: | chr6:66746876-66747182 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 3-430 |
| Cow position: | chr6:67266767-67267197 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 4-433 |
| Cow position: | chr6:28171394-28171837 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 73 |
| Conread position: | 5-277 |
| Cow position: | chr6:47615411-47615139 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 8, 26 |
| Conread position: | 5-431 |
| Cow position: | chr6:2580911-2581344 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 30, 69 |
| Conread position: | 5-431 |
| Cow position: | chr6:37387073-37387509 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 30, 70 |
| Conread position: | 5-433 |
| Cow position: | chr6:1536199-1536638 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 278 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 30, 351 |
| Conread position: | 5-434 |
| Cow position: | chr6:28159910-28160343 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 32, 70 |
| Conread position: | 5-437 |
| Cow position: | chr6:17170466-17170903 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 6-431 |
| Cow position: | chr6:11870440-11870003 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 275 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 17, 70 |
| Conread position: | 6-433 |
| Cow position: | chr6:35723897-35724328 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 98, 31 |
| Conread position: | 8-360 |
| Cow position: | chr6:30318257-30317909 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 82, 19 |
| Conread position: | 8-431 |
| Cow position: | chr6:19104411-19103977 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 99, 19 |
| Conread position: | 8-434 |
| Cow position: | chr6:9757119-9756682 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 283 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 98, 74 |
| Conread position: | 9-431 |
| Cow position: | chr6:44018334-44017897 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 65 |
| Conread position: | 9-431 |
| Cow position: | chr6:56452600-56452164 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 9-433 |
| Cow position: | chr6:3272984-3272547 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 26, 65 |
| Conread position: | 10-174 |
| Cow position: | chr6:7047548-7047711 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 79, 9 |
| Conread position: | 11-359 |
| Cow position: | chr6:10678332-10678678 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 95, 19 |
| Conread position: | 12-331 |
| Cow position: | chr6:13979261-13979591 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 63 |
| Conread position: | 12-331 |
| Cow position: | chr6:28186335-28186005 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 63 |
| Conread position: | 12-348 |
| Cow position: | chr6:9264832-9264490 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 90, 21 |
| Conread position: | 12-427 |
| Cow position: | chr6:7468153-7467723 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 24, 63 |
| Conread position: | 12-431 |
| Cow position: | chr6:20351591-20351158 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 23, 63 |
| Conread position: | 12-431 |
| Cow position: | chr6:60378660-60379094 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 274 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 11, 64 |
| Conread position: | 13-431 |
| Cow position: | chr6:26668525-26668092 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 275 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 22, 62 |
| Conread position: | 13-431 |
| Cow position: | chr6:55238194-55238627 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 62 |
| Conread position: | 18-332 |
| Cow position: | chr6:3263193-3262874 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 84, 52 |
| Conread position: | 19-273 |
| Cow position: | chr6:31010310-31010057 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 44 |
| Conread position: | 19-430 |
| Cow position: | chr6:32488410-32487992 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 16, 40 |
| Conread position: | 21-356 |
| Cow position: | chr6:28108775-28108440 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 83, 13 |
| Conread position: | 23-318 |
| Cow position: | chr6:5130806-5130509 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 77, 50 |
| Conread position: | 33-298 |
| Cow position: | chr6:58750513-58750240 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 74, 39 |
| Conread position: | 33-431 |
| Cow position: | chr6:1507986-1507579 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 40 |
| Conread position: | 33-431 |
| Cow position: | chr6:7138814-7138409 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 75, 40 |
| Conread position: | 33-431 |
| Cow position: | chr6:10043736-10044146 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 80, 40 |
| Conread position: | 33-431 |
| Cow position: | chr6:11019178-11019588 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 74, 40 |
| Conread position: | 33-431 |
| Cow position: | chr6:27151919-27151510 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 74, 40 |
| Conread position: | 33-431 |
| Cow position: | chr6:34128978-34129389 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 74, 40 |
| Conread position: | 33-433 |
| Cow position: | chr6:51867516-51867928 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 74, 40 |
| Conread position: | 33-434 |
| Cow position: | chr6:9734431-9734029 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 263 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 13, 42 |
| Conread position: | 33-434 |
| Cow position: | chr6:43620252-43620665 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 74, 46 |
| Conread position: | 35-433 |
| Cow position: | chr6:41676462-41676867 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 69, 41 |
| Conread position: | 35-455 |
| Cow position: | chr6:60168026-60167598 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 72, 37 |
| Conread position: | 37-431 |
| Cow position: | chr6:62852132-62852514 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 38-431 |
| Cow position: | chr6:19713704-19713303 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 76, 35 |
| Conread position: | 45-457 |
| Cow position: | chr6:30806323-30805910 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 272 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 94, 34 |
| Conread position: | 47-430 |
| Cow position: | chr6:7759692-7759313 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 51-433 |
| Cow position: | chr6:58952581-58952188 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 25 |
| Conread position: | 57-444 |
| Cow position: | chr6:7941237-7940847 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 63, 8 |
| Conread position: | 108-432 |
| Cow position: | chr6:41408002-41408337 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 31, 260 |
| Conread position: | 142-425 |
| Cow position: | chr6:10365605-10365324 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 96, 38 |
Show alignments to all cow chromosomes.