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Cow genome map

           
Conread name:
           
Pig2-4G16
        

               
Conread position:
               
6-238
               

               
Cow position:
               
chr5:69656258-69656027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 59
               

               
Conread position:
               
211-430
               

               
Cow position:
               
chr5:20345557-20345774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
113, 37
               

               
Conread position:
               
219-449
               

               
Cow position:
               
chr5:26894694-26894460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
16, 89
               

               
Conread position:
               
221-433
               

               
Cow position:
               
chr5:40122583-40122370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
226-416
               

               
Cow position:
               
chr5:44722480-44722291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
9, 57
               

               
Conread position:
               
226-420
               

               
Cow position:
               
chr5:12434577-12434761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
226-422
               

               
Cow position:
               
chr5:66257673-66257862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
226-423
               

               
Cow position:
               
chr5:17086986-17086788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
148, 39
               

               
Conread position:
               
226-423
               

               
Cow position:
               
chr5:47756808-47757001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
106, 9
               

               
Conread position:
               
226-423
               

               
Cow position:
               
chr5:75760240-75760039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
117, 32
               

               
Conread position:
               
226-424
               

               
Cow position:
               
chr5:51298678-51298485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
226-426
               

               
Cow position:
               
chr5:35684972-35685165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
139, 31
               

               
Conread position:
               
226-427
               

               
Cow position:
               
chr5:25035221-25035022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
101, 31
               

               
Conread position:
               
226-427
               

               
Cow position:
               
chr5:60016202-60016397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
226-429
               

               
Cow position:
               
chr5:6086309-6086106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 110
               

               
Conread position:
               
226-429
               

               
Cow position:
               
chr5:14920896-14920691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
226-430
               

               
Cow position:
               
chr5:69383289-69383489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
191, 95
               

               
Conread position:
               
226-433
               

               
Cow position:
               
chr5:26467660-26467867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
33, 114
               

               
Conread position:
               
226-435
               

               
Cow position:
               
chr5:3817653-3817446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
226-435
               

               
Cow position:
               
chr5:52668074-52668279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
98, 37
               

               
Conread position:
               
226-435
               

               
Cow position:
               
chr5:57101490-57101286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
22, 81
               

               
Conread position:
               
226-448
               

               
Cow position:
               
chr5:70678611-70678392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
69, 74
               

               
Conread position:
               
227-390
               

               
Cow position:
               
chr5:38168929-38169089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
77, 102
               

               
Conread position:
               
227-400
               

               
Cow position:
               
chr5:46704264-46704094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
227-407
               

               
Cow position:
               
chr5:17554997-17554822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 75
               

               
Conread position:
               
227-412
               

               
Cow position:
               
chr5:50600082-50600264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
46, 103
               

               
Conread position:
               
227-412
               

               
Cow position:
               
chr5:66466353-66466531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 31
               

               
Conread position:
               
227-416
               

               
Cow position:
               
chr5:60523770-60523949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
227-418
               

               
Cow position:
               
chr5:40109528-40109708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
227-418
               

               
Cow position:
               
chr5:69337855-69338038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
227-420
               

               
Cow position:
               
chr5:17104888-17105071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
227-420
               

               
Cow position:
               
chr5:56548607-56548792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
227-421
               

               
Cow position:
               
chr5:30629124-30628926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
49, 88
               

               
Conread position:
               
227-426
               

               
Cow position:
               
chr5:21617493-21617687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
227-426
               

               
Cow position:
               
chr5:59626936-59626740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
227-427
               

               
Cow position:
               
chr5:9894088-9893892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
227-427
               

               
Cow position:
               
chr5:20288228-20288024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
227-427
               

               
Cow position:
               
chr5:25495323-25495118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
113, 102
               

               
Conread position:
               
227-427
               

               
Cow position:
               
chr5:32338931-32338728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 89
               

               
Conread position:
               
227-427
               

               
Cow position:
               
chr5:42050587-42050778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
190, 94
               

               
Conread position:
               
227-427
               

               
Cow position:
               
chr5:56070894-56071090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
227-431
               

               
Cow position:
               
chr5:39035815-39036019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
111, 79
               

               
Conread position:
               
227-433
               

               
Cow position:
               
chr5:22667106-22667310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
190, 108
               

               
Conread position:
               
227-434
               

               
Cow position:
               
chr5:15991604-15991406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
227-435
               

               
Cow position:
               
chr5:34288215-34288012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
195, 30
               

               
Conread position:
               
227-435
               

               
Cow position:
               
chr5:50824627-50824827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
187, 93
               

               
Conread position:
               
227-435
               

               
Cow position:
               
chr5:56014766-56014962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
227-438
               

               
Cow position:
               
chr5:30232943-30233153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
105, 71
               

               
Conread position:
               
227-443
               

               
Cow position:
               
chr5:31052415-31052635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
71, 114
               

               
Conread position:
               
227-465
               

               
Cow position:
               
chr5:44028268-44028040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
228-431
               

               
Cow position:
               
chr5:6876931-6876727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
57, 9
               

               
Conread position:
               
228-434
               

               
Cow position:
               
chr5:41165124-41165322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
228-450
               

               
Cow position:
               
chr5:38833157-38833368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
231-385
               

               
Cow position:
               
chr5:17602167-17602014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 97
               

               
Conread position:
               
231-420
               

               
Cow position:
               
chr5:30492754-30492565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
64, 17
               

               
Conread position:
               
231-435
               

               
Cow position:
               
chr5:1694051-1693851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 91
               

               
Conread position:
               
233-434
               

               
Cow position:
               
chr5:44796692-44796495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
184, 90
               

               
Conread position:
               
233-434
               

               
Cow position:
               
chr5:47601853-47602048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
119, 94
               

               
Conread position:
               
233-436
               

               
Cow position:
               
chr5:26147632-26147828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
234-441
               

               
Cow position:
               
chr5:11668143-11667937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
124, 94
               

               
Conread position:
               
236-435
               

               
Cow position:
               
chr5:4280492-4280685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
237-406
               

               
Cow position:
               
chr5:12673430-12673268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
237-406
               

               
Cow position:
               
chr5:72006445-72006285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
237-407
               

               
Cow position:
               
chr5:66551852-66551679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 91
               

               
Conread position:
               
237-408
               

               
Cow position:
               
chr5:12351762-12351598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
158, 70
               

               
Conread position:
               
237-418
               

               
Cow position:
               
chr5:30253786-30253964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
237-419
               

               
Cow position:
               
chr5:37842234-37842054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
113, 100
               

               
Conread position:
               
237-419
               

               
Cow position:
               
chr5:69099765-69099944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
237-420
               

               
Cow position:
               
chr5:43402950-43403135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
87, 75
               

               
Conread position:
               
237-420
               

               
Cow position:
               
chr5:59335815-59335999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
49, 63
               

               
Conread position:
               
237-421
               

               
Cow position:
               
chr5:35190155-35190333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
237-421
               

               
Cow position:
               
chr5:60948178-60948359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
237-422
               

               
Cow position:
               
chr5:35394388-35394211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
237-422
               

               
Cow position:
               
chr5:53835762-53835949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
93, 44
               

               
Conread position:
               
237-423
               

               
Cow position:
               
chr5:2240946-2240760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
100, 92
               

               
Conread position:
               
237-423
               

               
Cow position:
               
chr5:3677768-3677957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
114, 23
               

               
Conread position:
               
237-423
               

               
Cow position:
               
chr5:29828092-29828277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
237-423
               

               
Cow position:
               
chr5:61455893-61456076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
158, 16
               

               
Conread position:
               
237-424
               

               
Cow position:
               
chr5:74643632-74643454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
237-427
               

               
Cow position:
               
chr5:35969577-35969773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
237-427
               

               
Cow position:
               
chr5:53055516-53055326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
237-429
               

               
Cow position:
               
chr5:49821473-49821666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
237-432
               

               
Cow position:
               
chr5:16668742-16668926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
237-432
               

               
Cow position:
               
chr5:35247065-35246868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
103, 92
               

               
Conread position:
               
237-433
               

               
Cow position:
               
chr5:43858374-43858179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
237-434
               

               
Cow position:
               
chr5:21828913-21829104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
237-434
               

               
Cow position:
               
chr5:33560689-33560499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
87, 75
               

               
Conread position:
               
237-434
               

               
Cow position:
               
chr5:61049377-61049574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
103, 69
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chr5:6839034-6838839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
79, 68
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chr5:12562715-12562520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
31, 73
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chr5:33834087-33834281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 51
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chr5:34562062-34562249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chr5:44446820-44446635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chr5:50723091-50723288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
58, 63
               

               
Conread position:
               
237-438
               

               
Cow position:
               
chr5:7057356-7057153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
58, 37
               

               
Conread position:
               
237-443
               

               
Cow position:
               
chr5:6438976-6438778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
237-450
               

               
Cow position:
               
chr5:34915008-34914798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
147, 90
               

               
Conread position:
               
237-450
               

               
Cow position:
               
chr5:46512723-46512508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
86, 38
               

               
Conread position:
               
237-451
               

               
Cow position:
               
chr5:56549411-56549630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 63
               

               
Conread position:
               
237-452
               

               
Cow position:
               
chr5:36038956-36038747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
237-463
               

               
Cow position:
               
chr5:60514983-60514758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
58, 44
               

               
Conread position:
               
238-407
               

               
Cow position:
               
chr5:65745719-65745555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
239-427
               

               
Cow position:
               
chr5:61201806-61201994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
56, 60
               

               
Conread position:
               
239-435
               

               
Cow position:
               
chr5:33273743-33273938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
101, 21
               

               
Conread position:
               
239-463
               

               
Cow position:
               
chr5:65140343-65140567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 70
               

               
Conread position:
               
240-412
               

               
Cow position:
               
chr5:67932424-67932248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 66
               

               
Conread position:
               
240-421
               

               
Cow position:
               
chr5:56060022-56059837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 66
               

               
Conread position:
               
240-424
               

               
Cow position:
               
chr5:45854539-45854731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
28, 66
               

               
Conread position:
               
240-425
               

               
Cow position:
               
chr5:72895734-72895919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
177, 98
               

               
Conread position:
               
240-427
               

               
Cow position:
               
chr5:30221730-30221542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
55, 64
               

               
Conread position:
               
240-427
               

               
Cow position:
               
chr5:52108220-52108026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
93, 59
               

               
Conread position:
               
240-427
               

               
Cow position:
               
chr5:64139608-64139798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
146, 93
               

               
Conread position:
               
240-431
               

               
Cow position:
               
chr5:57497376-57497188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
182, 93
               

               
Conread position:
               
240-433
               

               
Cow position:
               
chr5:8736231-8736039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
98, 28
               

               
Conread position:
               
240-433
               

               
Cow position:
               
chr5:43465573-43465765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 64
               

               
Conread position:
               
240-434
               

               
Cow position:
               
chr5:63187829-63187636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
84, 46
               

               
Conread position:
               
240-435
               

               
Cow position:
               
chr5:26167469-26167660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
240-435
               

               
Cow position:
               
chr5:46499608-46499803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
84, 56
               

               
Conread position:
               
240-435
               

               
Cow position:
               
chr5:46710630-46710823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
113, 22
               

               
Conread position:
               
240-435
               

               
Cow position:
               
chr5:56525664-56525470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
55, 64
               

               
Conread position:
               
240-436
               

               
Cow position:
               
chr5:12322756-12322569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
240-442
               

               
Cow position:
               
chr5:49342001-49341787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
240-447
               

               
Cow position:
               
chr5:26549092-26548892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
240-447
               

               
Cow position:
               
chr5:29829841-29829634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
55, 64
               

               
Conread position:
               
240-450
               

               
Cow position:
               
chr5:56433929-56434139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 25
               

               
Conread position:
               
240-452
               

               
Cow position:
               
chr5:39815453-39815245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
88, 62
               

               
Conread position:
               
240-465
               

               
Cow position:
               
chr5:34347686-34347459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
116, 30
               

               
Conread position:
               
240-468
               

               
Cow position:
               
chr5:12901965-12902192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
55, 59
               

               
Conread position:
               
241-396
               

               
Cow position:
               
chr5:64026970-64026813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
241-407
               

               
Cow position:
               
chr5:45397622-45397778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
241-415
               

               
Cow position:
               
chr5:5017425-5017592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
241-418
               

               
Cow position:
               
chr5:30276739-30276911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
148, 86
               

               
Conread position:
               
241-419
               

               
Cow position:
               
chr5:70591603-70591767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
241-423
               

               
Cow position:
               
chr5:66366559-66366737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
241-424
               

               
Cow position:
               
chr5:64176077-64175900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
241-425
               

               
Cow position:
               
chr5:70270916-70271098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
241-428
               

               
Cow position:
               
chr5:43408309-43408106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
241-430
               

               
Cow position:
               
chr5:3582609-3582791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
241-433
               

               
Cow position:
               
chr5:55942330-55942142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
111, 86
               

               
Conread position:
               
241-434
               

               
Cow position:
               
chr5:57074282-57074098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
241-435
               

               
Cow position:
               
chr5:51289542-51289363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
242-432
               

               
Cow position:
               
chr5:29895221-29895409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
242-446
               

               
Cow position:
               
chr5:24996172-24995970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
111, 29
               

               
Conread position:
               
243-420
               

               
Cow position:
               
chr5:74887849-74887673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
243-428
               

               
Cow position:
               
chr5:66972480-66972664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
74, 63
               

               
Conread position:
               
243-435
               

               
Cow position:
               
chr5:60207759-60207945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
243-435
               

               
Cow position:
               
chr5:61914615-61914811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
72, 62
               

               
Conread position:
               
243-443
               

               
Cow position:
               
chr5:12873802-12874003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
52, 56
               

               
Conread position:
               
243-451
               

               
Cow position:
               
chr5:46541002-46540801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
196, 14
               

               
Conread position:
               
244-419
               

               
Cow position:
               
chr5:11229622-11229446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
45, 132
               

               
Conread position:
               
244-420
               

               
Cow position:
               
chr5:37253481-37253649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
244-421
               

               
Cow position:
               
chr5:36143036-36143205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
244-423
               

               
Cow position:
               
chr5:7044653-7044477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
244-426
               

               
Cow position:
               
chr5:65941198-65941018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
137, 71
               

               
Conread position:
               
244-435
               

               
Cow position:
               
chr5:34918398-34918584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
244-452
               

               
Cow position:
               
chr5:58401621-58401821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
245-420
               

               
Cow position:
               
chr5:56028488-56028319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
245-423
               

               
Cow position:
               
chr5:74039950-74039777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
245-424
               

               
Cow position:
               
chr5:49207274-49207099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
245-425
               

               
Cow position:
               
chr5:60100523-60100693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
245-425
               

               
Cow position:
               
chr5:60153828-60153998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
245-427
               

               
Cow position:
               
chr5:64321807-64321994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
245-483
               

               
Cow position:
               
chr5:29599493-29599265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
246-436
               

               
Cow position:
               
chr5:38420655-38420849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
81, 21
               

               
Conread position:
               
246-471
               

               
Cow position:
               
chr5:74065463-74065238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
171, 65
               

               
Conread position:
               
247-432
               

               
Cow position:
               
chr5:51053594-51053411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
71, 59
               

               
Conread position:
               
248-419
               

               
Cow position:
               
chr5:55756362-55756188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
248-421
               

               
Cow position:
               
chr5:21721414-21721249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
248-423
               

               
Cow position:
               
chr5:19752359-19752530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
248-425
               

               
Cow position:
               
chr5:21339213-21339029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
248-427
               

               
Cow position:
               
chr5:12557231-12557052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
170, 79
               

               
Conread position:
               
248-435
               

               
Cow position:
               
chr5:18289178-18289360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
171, 79
               

               
Conread position:
               
250-427
               

               
Cow position:
               
chr5:52211629-52211458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
250-435
               

               
Cow position:
               
chr5:64843913-64843723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
64, 56
               

               
Conread position:
               
253-423
               

               
Cow position:
               
chr5:34787635-34787801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
253-433
               

               
Cow position:
               
chr5:25462149-25462323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
158, 89
               

               
Conread position:
               
253-452
               

               
Cow position:
               
chr5:66287006-66287199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
254-419
               

               
Cow position:
               
chr5:57447604-57447439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
62, 42
               

               
Conread position:
               
254-429
               

               
Cow position:
               
chr5:46479180-46479013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
258-415
               

               
Cow position:
               
chr5:72045611-72045456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
81, 70
               

               
Conread position:
               
258-422
               

               
Cow position:
               
chr5:5030509-5030667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
69, 10
               

               
Conread position:
               
258-423
               

               
Cow position:
               
chr5:6245597-6245436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
258-434
               

               
Cow position:
               
chr5:52849151-52849321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
258-435
               

               
Cow position:
               
chr5:52853037-52853212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
58, 54
               

               
Conread position:
               
258-452
               

               
Cow position:
               
chr5:67339949-67340139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
259-427
               

               
Cow position:
               
chr5:9559488-9559647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
158, 67
               

               
Conread position:
               
259-435
               

               
Cow position:
               
chr5:63300145-63300320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
169, 76
               

               
Conread position:
               
260-430
               

               
Cow position:
               
chr5:4824216-4824389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
261-442
               

               
Cow position:
               
chr5:32975827-32976011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
95, 66
               

               
Conread position:
               
266-426
               

               
Cow position:
               
chr5:34639196-34639356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
266-443
               

               
Cow position:
               
chr5:47335102-47335274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
134, 68
               

               
Conread position:
               
268-417
               

               
Cow position:
               
chr5:19626654-19626799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
268-432
               

               
Cow position:
               
chr5:47960185-47960026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
269-424
               

               
Cow position:
               
chr5:56860519-56860674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
71, 54
               

               
Conread position:
               
269-432
               

               
Cow position:
               
chr5:56624440-56624275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 37
               

               
Conread position:
               
269-435
               

               
Cow position:
               
chr5:58487452-58487613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 31
               

               
Conread position:
               
270-426
               

               
Cow position:
               
chr5:64061097-64061245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
271-452
               

               
Cow position:
               
chr5:4728153-4728325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
275-437
               

               
Cow position:
               
chr5:48104344-48104502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
26, 55
               

               
Conread position:
               
278-421
               

               
Cow position:
               
chr5:74049910-74050051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
295-435
               

               
Cow position:
               
chr5:20736774-20736638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
298-435
               

               
Cow position:
               
chr5:12654800-12654668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
301-427
               

               
Cow position:
               
chr5:20407366-20407241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               
Show alignments to all cow chromosomes.