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Cow genome map

           
Conread name:
           
Pig2-4G16
        

               
Conread position:
               
217-432
               

               
Cow position:
               
chrX:45412213-45412002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
213, 84
               

               
Conread position:
               
223-383
               

               
Cow position:
               
chrX:4515725-4515879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
223-421
               

               
Cow position:
               
chrX:36283371-36283569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
7, 74
               

               
Conread position:
               
226-380
               

               
Cow position:
               
chrX:29688140-29687987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
226-390
               

               
Cow position:
               
chrX:169512-169343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 102
               

               
Conread position:
               
226-420
               

               
Cow position:
               
chrX:8869367-8869176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
226-422
               

               
Cow position:
               
chrX:38094483-38094296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
226-423
               

               
Cow position:
               
chrX:29230034-29230238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
226-424
               

               
Cow position:
               
chrX:30337919-30337722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
101, 31
               

               
Conread position:
               
226-425
               

               
Cow position:
               
chrX:40648929-40649135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
226-426
               

               
Cow position:
               
chrX:28940277-28940478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
54, 104
               

               
Conread position:
               
226-427
               

               
Cow position:
               
chrX:34376977-34377174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
226-427
               

               
Cow position:
               
chrX:34398751-34398546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 80
               

               
Conread position:
               
226-432
               

               
Cow position:
               
chrX:6544292-6544485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
226-432
               

               
Cow position:
               
chrX:42247147-42246939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
91, 80
               

               
Conread position:
               
226-433
               

               
Cow position:
               
chrX:46587855-46588062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
9, 88
               

               
Conread position:
               
226-434
               

               
Cow position:
               
chrX:27261224-27261432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
9, 83
               

               
Conread position:
               
226-435
               

               
Cow position:
               
chrX:17231768-17231982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 82
               

               
Conread position:
               
226-435
               

               
Cow position:
               
chrX:27431883-27431679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
198, 108
               

               
Conread position:
               
226-435
               

               
Cow position:
               
chrX:34532555-34532755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
201, 95
               

               
Conread position:
               
226-446
               

               
Cow position:
               
chrX:34508579-34508819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
101, 159
               

               
Conread position:
               
226-451
               

               
Cow position:
               
chrX:38218747-38218969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
18, 105
               

               
Conread position:
               
226-452
               

               
Cow position:
               
chrX:17956726-17956948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
226-452
               

               
Cow position:
               
chrX:34411881-34412110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
111, 103
               

               
Conread position:
               
227-391
               

               
Cow position:
               
chrX:14275707-14275549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
227-412
               

               
Cow position:
               
chrX:31436510-31436689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
227-412
               

               
Cow position:
               
chrX:47079663-47079847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
100, 112
               

               
Conread position:
               
227-416
               

               
Cow position:
               
chrX:38642285-38642466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
227-420
               

               
Cow position:
               
chrX:5026292-5026479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
158, 100
               

               
Conread position:
               
227-420
               

               
Cow position:
               
chrX:31480007-31480194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
227-422
               

               
Cow position:
               
chrX:9252127-9251933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
227-423
               

               
Cow position:
               
chrX:22074832-22075026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
41, 106
               

               
Conread position:
               
227-423
               

               
Cow position:
               
chrX:40685292-40685098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
227-425
               

               
Cow position:
               
chrX:10252162-10251969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
5, 31
               

               
Conread position:
               
227-427
               

               
Cow position:
               
chrX:13913111-13913311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
111, 88
               

               
Conread position:
               
227-427
               

               
Cow position:
               
chrX:37072425-37072622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
190, 107
               

               
Conread position:
               
227-428
               

               
Cow position:
               
chrX:34314060-34314258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
190, 102
               

               
Conread position:
               
227-429
               

               
Cow position:
               
chrX:37781073-37780874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
190, 102
               

               
Conread position:
               
227-430
               

               
Cow position:
               
chrX:19469470-19469277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
227-431
               

               
Cow position:
               
chrX:34837028-34836833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
227-432
               

               
Cow position:
               
chrX:42927788-42927589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
190, 102
               

               
Conread position:
               
227-433
               

               
Cow position:
               
chrX:23359075-23358877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
227-433
               

               
Cow position:
               
chrX:32866911-32867110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
227-434
               

               
Cow position:
               
chrX:13177440-13177243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
227-434
               

               
Cow position:
               
chrX:22115281-22115073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
100, 193
               

               
Conread position:
               
227-434
               

               
Cow position:
               
chrX:34991400-34991606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
197, 102
               

               
Conread position:
               
227-435
               

               
Cow position:
               
chrX:1466198-1466407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
148, 102
               

               
Conread position:
               
227-435
               

               
Cow position:
               
chrX:6599746-6599532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
113, 102
               

               
Conread position:
               
227-435
               

               
Cow position:
               
chrX:27206833-27207037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
46, 103
               

               
Conread position:
               
227-436
               

               
Cow position:
               
chrX:47345363-47345574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
81, 119
               

               
Conread position:
               
227-437
               

               
Cow position:
               
chrX:29467742-29467535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
192, 102
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chrX:16984677-16984882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
227-448
               

               
Cow position:
               
chrX:20957274-20957494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
126, 100
               

               
Conread position:
               
227-453
               

               
Cow position:
               
chrX:32208786-32208568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
228-435
               

               
Cow position:
               
chrX:17795018-17795222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
98, 107
               

               
Conread position:
               
228-440
               

               
Cow position:
               
chrX:41871104-41871303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
228-442
               

               
Cow position:
               
chrX:4996622-4996840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
228-448
               

               
Cow position:
               
chrX:27668921-27668708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
228-451
               

               
Cow position:
               
chrX:10415216-10414994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
67, 72
               

               
Conread position:
               
229-423
               

               
Cow position:
               
chrX:42760290-42760484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 70
               

               
Conread position:
               
229-435
               

               
Cow position:
               
chrX:23136778-23136975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
139, 98
               

               
Conread position:
               
230-422
               

               
Cow position:
               
chrX:23471827-23471638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
234-433
               

               
Cow position:
               
chrX:18439039-18439240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
106, 73
               

               
Conread position:
               
236-435
               

               
Cow position:
               
chrX:11529391-11529580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
236-452
               

               
Cow position:
               
chrX:40336956-40337172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
79, 18
               

               
Conread position:
               
237-351
               

               
Cow position:
               
chrX:878334-878222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
237-411
               

               
Cow position:
               
chrX:35681613-35681786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
78, 69
               

               
Conread position:
               
237-415
               

               
Cow position:
               
chrX:40269537-40269731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
26, 150
               

               
Conread position:
               
237-416
               

               
Cow position:
               
chrX:27075005-27074827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
237-416
               

               
Cow position:
               
chrX:35382990-35382818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
237-416
               

               
Cow position:
               
chrX:39220125-39220312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
237-420
               

               
Cow position:
               
chrX:16836240-16836066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
237-421
               

               
Cow position:
               
chrX:38549493-38549676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
172, 92
               

               
Conread position:
               
237-423
               

               
Cow position:
               
chrX:29542171-29541997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
237-423
               

               
Cow position:
               
chrX:42855504-42855694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
103, 92
               

               
Conread position:
               
237-425
               

               
Cow position:
               
chrX:14883910-14883724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
52, 92
               

               
Conread position:
               
237-426
               

               
Cow position:
               
chrX:24749134-24749321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
119, 20
               

               
Conread position:
               
237-427
               

               
Cow position:
               
chrX:5097753-5097559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 165
               

               
Conread position:
               
237-427
               

               
Cow position:
               
chrX:5134517-5134709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
35, 51
               

               
Conread position:
               
237-427
               

               
Cow position:
               
chrX:6407590-6407778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
58, 31
               

               
Conread position:
               
237-427
               

               
Cow position:
               
chrX:9201594-9201778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
149, 90
               

               
Conread position:
               
237-427
               

               
Cow position:
               
chrX:22392938-22392753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
237-427
               

               
Cow position:
               
chrX:22482644-22482454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
101, 21
               

               
Conread position:
               
237-428
               

               
Cow position:
               
chrX:40035394-40035206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
103, 92
               

               
Conread position:
               
237-429
               

               
Cow position:
               
chrX:33654798-33654607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
80, 59
               

               
Conread position:
               
237-431
               

               
Cow position:
               
chrX:3806728-3806917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
237-432
               

               
Cow position:
               
chrX:2314573-2314378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
79, 69
               

               
Conread position:
               
237-432
               

               
Cow position:
               
chrX:33855173-33854985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
186, 47
               

               
Conread position:
               
237-432
               

               
Cow position:
               
chrX:43115197-43115391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
174, 11
               

               
Conread position:
               
237-433
               

               
Cow position:
               
chrX:19018785-19018588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
96, 190
               

               
Conread position:
               
237-433
               

               
Cow position:
               
chrX:20583712-20583899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
237-433
               

               
Cow position:
               
chrX:29451505-29451304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 63
               

               
Conread position:
               
237-433
               

               
Cow position:
               
chrX:34565332-34565527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
121, 31
               

               
Conread position:
               
237-434
               

               
Cow position:
               
chrX:12972729-12972923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
54, 93
               

               
Conread position:
               
237-434
               

               
Cow position:
               
chrX:19394599-19394797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
237-434
               

               
Cow position:
               
chrX:30962831-30962631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
101, 69
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chrX:2936003-2936196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chrX:6389127-6389322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chrX:11633728-11633926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
182, 101
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chrX:16763879-16763687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
81, 59
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chrX:25207809-25207620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
82, 51
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chrX:27446732-27446927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
79, 68
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chrX:31948889-31948689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
103, 70
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chrX:35276031-35276230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
116, 75
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chrX:35409798-35409995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
80, 62
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chrX:35885681-35885489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
80, 69
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chrX:41453348-41453541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chrX:42479879-42480069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
149, 90
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chrX:42875258-42875452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chrX:42893972-42894163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chrX:46909861-46910052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 62
               

               
Conread position:
               
237-436
               

               
Cow position:
               
chrX:11326051-11325866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
237-436
               

               
Cow position:
               
chrX:12290765-12290963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
58, 63
               

               
Conread position:
               
237-436
               

               
Cow position:
               
chrX:24331822-24332021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
58, 64
               

               
Conread position:
               
237-436
               

               
Cow position:
               
chrX:27270421-27270616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
54, 93
               

               
Conread position:
               
237-443
               

               
Cow position:
               
chrX:12437224-12437033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
237-443
               

               
Cow position:
               
chrX:20666855-20666654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
51, 98
               

               
Conread position:
               
237-449
               

               
Cow position:
               
chrX:1960379-1960169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
109, 92
               

               
Conread position:
               
237-449
               

               
Cow position:
               
chrX:29601782-29601572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
237-452
               

               
Cow position:
               
chrX:12095726-12095513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
82, 59
               

               
Conread position:
               
237-452
               

               
Cow position:
               
chrX:15545928-15546144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 69
               

               
Conread position:
               
240-423
               

               
Cow position:
               
chrX:4109233-4109416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
240-427
               

               
Cow position:
               
chrX:13121987-13122181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 60
               

               
Conread position:
               
240-427
               

               
Cow position:
               
chrX:34792262-34792087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
182, 36
               

               
Conread position:
               
240-427
               

               
Cow position:
               
chrX:36367886-36367699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
55, 64
               

               
Conread position:
               
240-428
               

               
Cow position:
               
chrX:41166776-41166593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
240-430
               

               
Cow position:
               
chrX:38301858-38302052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
100, 89
               

               
Conread position:
               
240-432
               

               
Cow position:
               
chrX:27705635-27705828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
100, 89
               

               
Conread position:
               
240-433
               

               
Cow position:
               
chrX:5118449-5118258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
92, 99
               

               
Conread position:
               
240-433
               

               
Cow position:
               
chrX:24365772-24365581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
84, 48
               

               
Conread position:
               
240-434
               

               
Cow position:
               
chrX:6634393-6634587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
70, 56
               

               
Conread position:
               
240-435
               

               
Cow position:
               
chrX:4403366-4403561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
55, 59
               

               
Conread position:
               
240-435
               

               
Cow position:
               
chrX:27145653-27145844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
177, 89
               

               
Conread position:
               
240-435
               

               
Cow position:
               
chrX:27442490-27442295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
57, 64
               

               
Conread position:
               
240-435
               

               
Cow position:
               
chrX:31983536-31983335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
240-435
               

               
Cow position:
               
chrX:41941672-41941865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 60
               

               
Conread position:
               
240-435
               

               
Cow position:
               
chrX:47100548-47100352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 56
               

               
Conread position:
               
240-436
               

               
Cow position:
               
chrX:32821077-32821284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
240-436
               

               
Cow position:
               
chrX:41454905-41454710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 64
               

               
Conread position:
               
240-437
               

               
Cow position:
               
chrX:29050299-29050487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
240-444
               

               
Cow position:
               
chrX:597425-597225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
183, 45
               

               
Conread position:
               
240-464
               

               
Cow position:
               
chrX:44941769-44941994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 65
               

               
Conread position:
               
240-471
               

               
Cow position:
               
chrX:26843220-26842984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
55, 64
               

               
Conread position:
               
240-473
               

               
Cow position:
               
chrX:42449965-42449734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
55, 70
               

               
Conread position:
               
241-416
               

               
Cow position:
               
chrX:21986241-21986077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
241-420
               

               
Cow position:
               
chrX:42381062-42380884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
96, 88
               

               
Conread position:
               
241-423
               

               
Cow position:
               
chrX:38853248-38853442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
85, 17
               

               
Conread position:
               
241-432
               

               
Cow position:
               
chrX:41858832-41858644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
241-435
               

               
Cow position:
               
chrX:1101607-1101793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 59
               

               
Conread position:
               
241-435
               

               
Cow position:
               
chrX:39290409-39290597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
140, 79
               

               
Conread position:
               
241-435
               

               
Cow position:
               
chrX:46079135-46079331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
91, 66
               

               
Conread position:
               
241-463
               

               
Cow position:
               
chrX:34504999-34504782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
31, 66
               

               
Conread position:
               
242-436
               

               
Cow position:
               
chrX:32943025-32942832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
180, 144
               

               
Conread position:
               
243-402
               

               
Cow position:
               
chrX:35542939-35543094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
243-416
               

               
Cow position:
               
chrX:8326956-8327129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
94, 86
               

               
Conread position:
               
243-416
               

               
Cow position:
               
chrX:11653822-11653991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
243-431
               

               
Cow position:
               
chrX:26493058-26493247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
72, 62
               

               
Conread position:
               
243-432
               

               
Cow position:
               
chrX:20339840-20339654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
97, 42
               

               
Conread position:
               
243-432
               

               
Cow position:
               
chrX:46068707-46068524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
243-433
               

               
Cow position:
               
chrX:35658851-35659034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
97, 14
               

               
Conread position:
               
243-435
               

               
Cow position:
               
chrX:11656133-11656322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
183, 84
               

               
Conread position:
               
243-446
               

               
Cow position:
               
chrX:41790377-41790174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
74, 52
               

               
Conread position:
               
243-473
               

               
Cow position:
               
chrX:34554775-34555003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
52, 56
               

               
Conread position:
               
244-424
               

               
Cow position:
               
chrX:296444-296624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
51, 55
               

               
Conread position:
               
244-434
               

               
Cow position:
               
chrX:47855034-47855219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
244-449
               

               
Cow position:
               
chrX:12979781-12979577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
179, 83
               

               
Conread position:
               
245-390
               

               
Cow position:
               
chrX:13647731-13647586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
95, 84
               

               
Conread position:
               
245-427
               

               
Cow position:
               
chrX:26881511-26881327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
92, 133
               

               
Conread position:
               
245-443
               

               
Cow position:
               
chrX:4289498-4289686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
179, 84
               

               
Conread position:
               
246-434
               

               
Cow position:
               
chrX:5487881-5487706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
246-442
               

               
Cow position:
               
chrX:4632802-4632606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
49, 54
               

               
Conread position:
               
247-420
               

               
Cow position:
               
chrX:17524328-17524155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
109, 80
               

               
Conread position:
               
247-422
               

               
Cow position:
               
chrX:6480540-6480365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
93, 82
               

               
Conread position:
               
247-435
               

               
Cow position:
               
chrX:25815845-25815655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
91, 59
               

               
Conread position:
               
247-435
               

               
Cow position:
               
chrX:40108462-40108270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
90, 82
               

               
Conread position:
               
247-435
               

               
Cow position:
               
chrX:42086884-42087070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
90, 7
               

               
Conread position:
               
248-426
               

               
Cow position:
               
chrX:23497634-23497463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
248-427
               

               
Cow position:
               
chrX:17525810-17525642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
248-428
               

               
Cow position:
               
chrX:47979355-47979533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
79, 22
               

               
Conread position:
               
248-432
               

               
Cow position:
               
chrX:27175055-27175240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
98, 49
               

               
Conread position:
               
248-433
               

               
Cow position:
               
chrX:51844-51660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 50
               

               
Conread position:
               
250-437
               

               
Cow position:
               
chrX:11602424-11602244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
253-435
               

               
Cow position:
               
chrX:4750270-4750094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
164, 50
               

               
Conread position:
               
254-433
               

               
Cow position:
               
chrX:40556396-40556221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
60, 76
               

               
Conread position:
               
254-434
               

               
Cow position:
               
chrX:11674173-11674353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 46
               

               
Conread position:
               
254-434
               

               
Cow position:
               
chrX:16801200-16801026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
66, 34
               

               
Conread position:
               
254-434
               

               
Cow position:
               
chrX:41215385-41215566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
73, 86
               

               
Conread position:
               
254-435
               

               
Cow position:
               
chrX:1938077-1938256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
41, 49
               

               
Conread position:
               
258-434
               

               
Cow position:
               
chrX:24633762-24633929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
164, 69
               

               
Conread position:
               
258-434
               

               
Cow position:
               
chrX:39642555-39642387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
258-435
               

               
Cow position:
               
chrX:4559800-4559977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
82, 71
               

               
Conread position:
               
258-451
               

               
Cow position:
               
chrX:14135745-14135932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
259-432
               

               
Cow position:
               
chrX:11589299-11589127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
261-416
               

               
Cow position:
               
chrX:4486954-4486800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
66, 94
               

               
Conread position:
               
263-433
               

               
Cow position:
               
chrX:29682039-29681878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
264-423
               

               
Cow position:
               
chrX:31279851-31279696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
268-426
               

               
Cow position:
               
chrX:231941-231792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
268-432
               

               
Cow position:
               
chrX:43059174-43059016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
268-435
               

               
Cow position:
               
chrX:30672313-30672142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
48, 38
               

               
Conread position:
               
269-423
               

               
Cow position:
               
chrX:35029848-35029705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
271-419
               

               
Cow position:
               
chrX:13785142-13784985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
273-433
               

               
Cow position:
               
chrX:43028314-43028473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
144, 54
               

               
Conread position:
               
275-439
               

               
Cow position:
               
chrX:37176958-37177114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
275-449
               

               
Cow position:
               
chrX:40108259-40108087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
168, 63
               

               
Conread position:
               
277-450
               

               
Cow position:
               
chrX:47730568-47730743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
140, 77
               

               
Conread position:
               
279-421
               

               
Cow position:
               
chrX:4399207-4399347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
292-427
               

               
Cow position:
               
chrX:38727037-38726908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
130, 41
               

               
Conread position:
               
328-452
               

               
Cow position:
               
chrX:38726072-38726196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.