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Cow genome map

           
Conread name:
           
Pig2-4O11
        

               
Conread position:
               
1-197
               

               
Cow position:
               
chr21:20260255-20260456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
75, 38
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr21:12461903-12462109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr21:18041783-18041989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
46, 30
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr21:28244535-28244315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
76, 32
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr21:13365407-13365176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
74, 158
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr21:24642585-24642349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
65, 37
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr21:15611209-15610974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
104, 62
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:13488590-13488337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
45, 32
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:18844948-18845198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 203
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr21:10601311-10601560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
28, 175
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr21:21077390-21077134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
76, 37
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr21:12801685-12801947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 171
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr21:19258886-19258622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
80, 34
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr21:27569105-27569367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
26, 35
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr21:29485046-29484769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 154
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr21:11644902-11645189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
29, 151
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr21:12960834-12961117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 272
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr21:18850162-18850446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
76, 35
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr21:33350805-33350484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 14
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr21:16187743-16188068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
76, 38
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr21:21480120-21480456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
22, 14
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr21:17410594-17410935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
66, 7
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr21:8985616-8985268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
32, 40
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr21:42384572-42384227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr21:5392472-5392820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
68, 37
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr21:24858379-24858029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 30
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr21:33982743-33983092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 26
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr21:38121165-38120821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 39
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr21:15584355-15584682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
66, 37
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr21:31701894-31702239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
66, 17
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr21:42414034-42414382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
34, 40
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chr21:26647944-26648295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
110, 75
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chr21:28443309-28443653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
76, 62
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr21:28733848-28734208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
33, 43
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chr21:30990214-30990628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 22
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chr21:19363395-19363819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 148
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr21:37299526-37299088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 39
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr21:2367396-2366962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 35
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr21:42540158-42540599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 39
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr21:16612689-16612249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 34
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr21:29069263-29069706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 38
               

               
Conread position:
               
1-419
               

               
Cow position:
               
chr21:36297557-36297111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 362
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr21:724820-725275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 38
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr21:33563072-33562648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 34
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr21:643388-642959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 14
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr21:2904414-2904850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
65, 14
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr21:24131133-24130699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 14
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr21:24222473-24222926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
71, 41
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr21:27743813-27743354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
76, 39
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr21:31691549-31691109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 401
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr21:38918268-38917848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
116, 29
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chr21:21216077-21216528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
76, 44
               

               
Conread position:
               
1-425
               

               
Cow position:
               
chr21:44565653-44566088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
22, 13
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr21:33263908-33263453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 77
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr21:41621188-41620914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
2-304
               

               
Cow position:
               
chr21:41155928-41155609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
65, 167
               

               
Conread position:
               
2-332
               

               
Cow position:
               
chr21:6764637-6764983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
2-346
               

               
Cow position:
               
chr21:11640085-11639725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
72, 28
               

               
Conread position:
               
2-397
               

               
Cow position:
               
chr21:37480018-37479596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 34
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr21:23984219-23984649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
70, 33
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chr21:16696430-16695995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
75, 13
               

               
Conread position:
               
2-419
               

               
Cow position:
               
chr21:18289726-18289278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 28
               

               
Conread position:
               
2-421
               

               
Cow position:
               
chr21:27863450-27863907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
2-424
               

               
Cow position:
               
chr21:24795971-24796424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
37, 150
               

               
Conread position:
               
3-332
               

               
Cow position:
               
chr21:46264234-46263896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
74, 32
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr21:28626302-28626029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
30, 8
               

               
Conread position:
               
4-431
               

               
Cow position:
               
chr21:18495031-18494583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 22
               

               
Conread position:
               
5-334
               

               
Cow position:
               
chr21:4732165-4732500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
111, 18
               

               
Conread position:
               
5-421
               

               
Cow position:
               
chr21:22856281-22855835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
6-334
               

               
Cow position:
               
chr21:40786743-40786388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
21, 104
               

               
Conread position:
               
6-413
               

               
Cow position:
               
chr21:3813424-3813846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 36
               

               
Conread position:
               
7-280
               

               
Cow position:
               
chr21:27124063-27124349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
16, 277
               

               
Conread position:
               
7-331
               

               
Cow position:
               
chr21:2679615-2679279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 20
               

               
Conread position:
               
7-331
               

               
Cow position:
               
chr21:19958272-19957950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
164, 26
               

               
Conread position:
               
7-333
               

               
Cow position:
               
chr21:7673181-7672851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 33
               

               
Conread position:
               
7-333
               

               
Cow position:
               
chr21:47802201-47802544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 46
               

               
Conread position:
               
7-378
               

               
Cow position:
               
chr21:641645-641243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
70, 35
               

               
Conread position:
               
7-399
               

               
Cow position:
               
chr21:4399862-4399435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
70, 8
               

               
Conread position:
               
7-407
               

               
Cow position:
               
chr21:45915656-45916077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
70, 24
               

               
Conread position:
               
7-409
               

               
Cow position:
               
chr21:30231636-30232074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 26
               

               
Conread position:
               
7-413
               

               
Cow position:
               
chr21:33729488-33729055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
70, 25
               

               
Conread position:
               
7-420
               

               
Cow position:
               
chr21:22718725-22719160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 23
               

               
Conread position:
               
7-420
               

               
Cow position:
               
chr21:42913685-42914130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 33
               

               
Conread position:
               
7-421
               

               
Cow position:
               
chr21:2420557-2420118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
70, 26
               

               
Conread position:
               
7-421
               

               
Cow position:
               
chr21:27229733-27230178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 173
               

               
Conread position:
               
7-421
               

               
Cow position:
               
chr21:30848888-30849324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
25, 39
               

               
Conread position:
               
8-249
               

               
Cow position:
               
chr21:32559302-32559545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
24, 36
               

               
Conread position:
               
8-250
               

               
Cow position:
               
chr21:47764054-47764303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 139
               

               
Conread position:
               
8-256
               

               
Cow position:
               
chr21:33727407-33727659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
69, 34
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chr21:22861059-22860798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
69, 153
               

               
Conread position:
               
8-334
               

               
Cow position:
               
chr21:13489703-13489360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
63, 28
               

               
Conread position:
               
9-421
               

               
Cow position:
               
chr21:20262276-20262721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 36
               

               
Conread position:
               
10-309
               

               
Cow position:
               
chr21:20329403-20329085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
10-419
               

               
Cow position:
               
chr21:12617195-12616758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 34
               

               
Conread position:
               
11-330
               

               
Cow position:
               
chr21:39821752-39822089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
66, 25
               

               
Conread position:
               
11-333
               

               
Cow position:
               
chr21:10437227-10436887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
11-334
               

               
Cow position:
               
chr21:150532-150193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
66, 41
               

               
Conread position:
               
11-334
               

               
Cow position:
               
chr21:750794-750455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 25
               

               
Conread position:
               
11-334
               

               
Cow position:
               
chr21:27376504-27376166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
68, 21
               

               
Conread position:
               
11-334
               

               
Cow position:
               
chr21:28914305-28914646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
70, 41
               

               
Conread position:
               
11-342
               

               
Cow position:
               
chr21:1529180-1529519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
67, 25
               

               
Conread position:
               
11-342
               

               
Cow position:
               
chr21:19439519-19439172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
31, 120
               

               
Conread position:
               
11-400
               

               
Cow position:
               
chr21:3819158-3818745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
67, 41
               

               
Conread position:
               
11-408
               

               
Cow position:
               
chr21:47767327-47767757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
67, 21
               

               
Conread position:
               
11-410
               

               
Cow position:
               
chr21:33709112-33709546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
61, 31
               

               
Conread position:
               
11-421
               

               
Cow position:
               
chr21:42559153-42558717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
66, 41
               

               
Conread position:
               
11-421
               

               
Cow position:
               
chr21:47649727-47649284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
70, 34
               

               
Conread position:
               
11-423
               

               
Cow position:
               
chr21:1178879-1179323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 433
               

               
Conread position:
               
11-423
               

               
Cow position:
               
chr21:19614633-19614187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
11-423
               

               
Cow position:
               
chr21:32192228-32191791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
66, 25
               

               
Conread position:
               
11-423
               

               
Cow position:
               
chr21:34910249-34909805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
12-332
               

               
Cow position:
               
chr21:33235855-33235517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
65, 24
               

               
Conread position:
               
12-334
               

               
Cow position:
               
chr21:28260052-28259714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
65, 30
               

               
Conread position:
               
12-348
               

               
Cow position:
               
chr21:41957122-41957471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 30
               

               
Conread position:
               
16-230
               

               
Cow position:
               
chr21:32339685-32339905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
33, 21
               

               
Conread position:
               
17-296
               

               
Cow position:
               
chr21:42905327-42905620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
17-322
               

               
Cow position:
               
chr21:18781886-18781579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
60, 22
               

               
Conread position:
               
17-334
               

               
Cow position:
               
chr21:11759421-11759747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
12, 23
               

               
Conread position:
               
18-273
               

               
Cow position:
               
chr21:37361426-37361684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
59, 127
               

               
Conread position:
               
18-413
               

               
Cow position:
               
chr21:394071-393643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 380
               

               
Conread position:
               
19-333
               

               
Cow position:
               
chr21:23192462-23192800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
22-333
               

               
Cow position:
               
chr21:10727320-10726999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
23-304
               

               
Cow position:
               
chr21:40058849-40058553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
52, 20
               

               
Conread position:
               
24-413
               

               
Cow position:
               
chr21:32297464-32297881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 206
               

               
Conread position:
               
25-222
               

               
Cow position:
               
chr21:27624752-27624552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
23, 11
               

               
Conread position:
               
25-306
               

               
Cow position:
               
chr21:7132424-7132717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 99
               

               
Conread position:
               
25-334
               

               
Cow position:
               
chr21:46776946-46777256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
52, 14
               

               
Conread position:
               
25-420
               

               
Cow position:
               
chr21:5595700-5595278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
52, 67
               

               
Conread position:
               
26-207
               

               
Cow position:
               
chr21:957716-957521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
21, 75
               

               
Conread position:
               
27-268
               

               
Cow position:
               
chr21:40134199-40133946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
50, 11
               

               
Conread position:
               
28-188
               

               
Cow position:
               
chr21:27810447-27810278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
49, 8
               

               
Conread position:
               
33-206
               

               
Cow position:
               
chr21:35354568-35354393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
40, 144
               

               
Conread position:
               
33-423
               

               
Cow position:
               
chr21:4998451-4998872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 145
               

               
Conread position:
               
33-424
               

               
Cow position:
               
chr21:23606708-23606284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
37-423
               

               
Cow position:
               
chr21:33210232-33209812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 8
               

               
Conread position:
               
42-332
               

               
Cow position:
               
chr21:25127628-25127329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
35, 113
               

               
Conread position:
               
45-238
               

               
Cow position:
               
chr21:45375645-45375436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 75
               

               
Conread position:
               
45-332
               

               
Cow position:
               
chr21:32237318-32237019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
32, 102
               

               
Conread position:
               
46-260
               

               
Cow position:
               
chr21:21223307-21223088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
46-277
               

               
Cow position:
               
chr21:23586902-23586658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
31, 233
               

               
Conread position:
               
46-285
               

               
Cow position:
               
chr21:13738584-13738345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 126
               

               
Conread position:
               
46-333
               

               
Cow position:
               
chr21:39401616-39401318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 131
               

               
Conread position:
               
46-413
               

               
Cow position:
               
chr21:18932507-18932115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 71
               

               
Conread position:
               
46-421
               

               
Cow position:
               
chr21:28924132-28923755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
31, 50
               

               
Conread position:
               
46-421
               

               
Cow position:
               
chr21:30250174-30250592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
46-421
               

               
Cow position:
               
chr21:48484425-48484827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
31, 107
               

               
Conread position:
               
47-273
               

               
Cow position:
               
chr21:32665757-32665989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
44, 35
               

               
Conread position:
               
47-334
               

               
Cow position:
               
chr21:44331273-44331569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
47, 31
               

               
Conread position:
               
47-334
               

               
Cow position:
               
chr21:44754758-44755060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
30, 67
               

               
Conread position:
               
47-413
               

               
Cow position:
               
chr21:938049-937673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 111
               

               
Conread position:
               
48-312
               

               
Cow position:
               
chr21:13035024-13035310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-333
               

               
Cow position:
               
chr21:28512548-28512259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 70
               

               
Conread position:
               
52-421
               

               
Cow position:
               
chr21:17145169-17144761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
53-295
               

               
Cow position:
               
chr21:13409809-13410067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
24, 39
               

               
Conread position:
               
53-308
               

               
Cow position:
               
chr21:25281780-25282044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
24, 77
               

               
Conread position:
               
53-334
               

               
Cow position:
               
chr21:703153-703449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
25, 38
               

               
Conread position:
               
53-334
               

               
Cow position:
               
chr21:10854608-10854303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
53-334
               

               
Cow position:
               
chr21:24136937-24136635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
28, 206
               

               
Conread position:
               
53-390
               

               
Cow position:
               
chr21:41033295-41032925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 77
               

               
Conread position:
               
53-410
               

               
Cow position:
               
chr21:82094-81694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
53-410
               

               
Cow position:
               
chr21:23899787-23900183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
53-411
               

               
Cow position:
               
chr21:2495154-2495548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
53-420
               

               
Cow position:
               
chr21:39700056-39700463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
22, 78
               

               
Conread position:
               
53-421
               

               
Cow position:
               
chr21:12366397-12366000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
24, 62
               

               
Conread position:
               
53-421
               

               
Cow position:
               
chr21:34251525-34251920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 74
               

               
Conread position:
               
53-423
               

               
Cow position:
               
chr21:34901017-34900618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
63, 25
               

               
Conread position:
               
53-424
               

               
Cow position:
               
chr21:18718688-18718306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 317
               

               
Conread position:
               
53-432
               

               
Cow position:
               
chr21:7814694-7815116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
53-436
               

               
Cow position:
               
chr21:30567031-30566630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
25, 92
               

               
Conread position:
               
56-333
               

               
Cow position:
               
chr21:23683560-23683268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
23, 114
               

               
Conread position:
               
57-330
               

               
Cow position:
               
chr21:47760780-47760498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
57-334
               

               
Cow position:
               
chr21:2877496-2877795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
24, 143
               

               
Conread position:
               
57-334
               

               
Cow position:
               
chr21:3783110-3782817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
57-334
               

               
Cow position:
               
chr21:3987469-3987769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
63-429
               

               
Cow position:
               
chr21:16789729-16789325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
64-345
               

               
Cow position:
               
chr21:42024120-42023841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
65-257
               

               
Cow position:
               
chr21:22353236-22353428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
106, 13
               

               
Conread position:
               
65-268
               

               
Cow position:
               
chr21:17428497-17428296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
106, 13
               

               
Conread position:
               
65-271
               

               
Cow position:
               
chr21:15445078-15445292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
50, 13
               

               
Conread position:
               
65-271
               

               
Cow position:
               
chr21:42348679-42348891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
107, 13
               

               
Conread position:
               
65-295
               

               
Cow position:
               
chr21:46242240-46242477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
65-299
               

               
Cow position:
               
chr21:5636723-5636969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
101, 13
               

               
Conread position:
               
65-309
               

               
Cow position:
               
chr21:18783690-18783941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
166, 12
               

               
Conread position:
               
65-312
               

               
Cow position:
               
chr21:25344867-25344617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
54, 13
               

               
Conread position:
               
65-330
               

               
Cow position:
               
chr21:41974380-41974658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
106, 12
               

               
Conread position:
               
65-332
               

               
Cow position:
               
chr21:34181990-34181714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
65-333
               

               
Cow position:
               
chr21:26875924-26875639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
65-333
               

               
Cow position:
               
chr21:48107867-48108135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 105
               

               
Conread position:
               
65-334
               

               
Cow position:
               
chr21:395865-395595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 13
               

               
Conread position:
               
65-334
               

               
Cow position:
               
chr21:5344653-5344378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
52, 13
               

               
Conread position:
               
65-334
               

               
Cow position:
               
chr21:36642902-36642624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
65-334
               

               
Cow position:
               
chr21:45151624-45151914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 13
               

               
Conread position:
               
65-334
               

               
Cow position:
               
chr21:46912535-46912261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
66, 13
               

               
Conread position:
               
65-405
               

               
Cow position:
               
chr21:10151790-10151437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
51, 12
               

               
Conread position:
               
65-412
               

               
Cow position:
               
chr21:5649903-5649528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
65-423
               

               
Cow position:
               
chr21:19626375-19626767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 381
               

               
Conread position:
               
65-423
               

               
Cow position:
               
chr21:21910357-21909968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
17, 378
               

               
Conread position:
               
65-429
               

               
Cow position:
               
chr21:28882130-28881756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
54, 12
               

               
Conread position:
               
66-329
               

               
Cow position:
               
chr21:17511772-17511501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
50, 11
               

               
Conread position:
               
66-410
               

               
Cow position:
               
chr21:34390979-34391342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 97
               

               
Conread position:
               
67-241
               

               
Cow position:
               
chr21:2785781-2785960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
67-299
               

               
Cow position:
               
chr21:19615169-19614925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
10, 119
               

               
Conread position:
               
67-307
               

               
Cow position:
               
chr21:39403541-39403794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
10, 79
               

               
Conread position:
               
67-309
               

               
Cow position:
               
chr21:15867304-15867057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
10, 106
               

               
Conread position:
               
67-332
               

               
Cow position:
               
chr21:21963478-21963197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
67-333
               

               
Cow position:
               
chr21:2939029-2938747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
67-333
               

               
Cow position:
               
chr21:4092982-4092702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
67-333
               

               
Cow position:
               
chr21:11143522-11143802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 52
               

               
Conread position:
               
67-333
               

               
Cow position:
               
chr21:11510266-11509984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
67-333
               

               
Cow position:
               
chr21:13169150-13168868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
67-333
               

               
Cow position:
               
chr21:13632889-13632607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
67-333
               

               
Cow position:
               
chr21:15905820-15905540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
67-333
               

               
Cow position:
               
chr21:25480589-25480307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
67-333
               

               
Cow position:
               
chr21:26756396-26756677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
67-333
               

               
Cow position:
               
chr21:27607363-27607645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
67-333
               

               
Cow position:
               
chr21:38650926-38651203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
15, 107
               

               
Conread position:
               
67-334
               

               
Cow position:
               
chr21:1196867-1196584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
67-334
               

               
Cow position:
               
chr21:17369886-17370166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 10
               

               
Conread position:
               
67-334
               

               
Cow position:
               
chr21:29500906-29500623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
11, 58
               

               
Conread position:
               
67-334
               

               
Cow position:
               
chr21:30688193-30688472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
15, 107
               

               
Conread position:
               
67-334
               

               
Cow position:
               
chr21:36781450-36781172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 58
               

               
Conread position:
               
67-334
               

               
Cow position:
               
chr21:43401994-43402273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
67-343
               

               
Cow position:
               
chr21:19196167-19196460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
67-351
               

               
Cow position:
               
chr21:2359886-2359592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 92
               

               
Conread position:
               
67-393
               

               
Cow position:
               
chr21:42190180-42190517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
11, 73
               

               
Conread position:
               
67-410
               

               
Cow position:
               
chr21:26835295-26835670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
10, 58
               

               
Conread position:
               
67-411
               

               
Cow position:
               
chr21:452204-451827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
15, 58
               

               
Conread position:
               
67-411
               

               
Cow position:
               
chr21:2472447-2472824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
67-413
               

               
Cow position:
               
chr21:611773-612146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
10, 58
               

               
Conread position:
               
67-420
               

               
Cow position:
               
chr21:18935754-18935386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 11
               

               
Conread position:
               
67-421
               

               
Cow position:
               
chr21:5641508-5641895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
15, 58
               

               
Conread position:
               
67-421
               

               
Cow position:
               
chr21:6624155-6623762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 344
               

               
Conread position:
               
67-423
               

               
Cow position:
               
chr21:48475-48086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 378
               

               
Conread position:
               
67-423
               

               
Cow position:
               
chr21:10074936-10075321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
15, 374
               

               
Conread position:
               
67-423
               

               
Cow position:
               
chr21:26629097-26628710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
10, 58
               

               
Conread position:
               
67-423
               

               
Cow position:
               
chr21:32535970-32535598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 58
               

               
Conread position:
               
67-423
               

               
Cow position:
               
chr21:33419728-33420103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
48, 11
               

               
Conread position:
               
67-423
               

               
Cow position:
               
chr21:34074967-34074580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
15, 376
               

               
Conread position:
               
67-424
               

               
Cow position:
               
chr21:30965613-30966000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
15, 58
               

               
Conread position:
               
67-427
               

               
Cow position:
               
chr21:19766851-19766461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
10, 108
               

               
Conread position:
               
67-433
               

               
Cow position:
               
chr21:8896220-8896578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 58
               

               
Conread position:
               
68-413
               

               
Cow position:
               
chr21:1483485-1483127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
46, 10
               

               
Conread position:
               
68-421
               

               
Cow position:
               
chr21:10070939-10071316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
9, 105
               

               
Conread position:
               
71-275
               

               
Cow position:
               
chr21:30059448-30059661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
71-309
               

               
Cow position:
               
chr21:5970847-5971094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
7, 54
               

               
Conread position:
               
71-309
               

               
Cow position:
               
chr21:30650531-30650785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
71-332
               

               
Cow position:
               
chr21:2490794-2491071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
71-332
               

               
Cow position:
               
chr21:13931133-13930856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
71-332
               

               
Cow position:
               
chr21:45372351-45372074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
11, 227
               

               
Conread position:
               
71-333
               

               
Cow position:
               
chr21:661611-661889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
71-333
               

               
Cow position:
               
chr21:1457625-1457903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
71-333
               

               
Cow position:
               
chr21:3364785-3364507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
71-333
               

               
Cow position:
               
chr21:4957194-4957472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
71-333
               

               
Cow position:
               
chr21:5791221-5790943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
71-333
               

               
Cow position:
               
chr21:7037867-7038145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
71-333
               

               
Cow position:
               
chr21:7525443-7525165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
71-333
               

               
Cow position:
               
chr21:9743583-9743861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
71-333
               

               
Cow position:
               
chr21:16575121-16575399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
71-333
               

               
Cow position:
               
chr21:17539730-17539452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
71-333
               

               
Cow position:
               
chr21:19502021-19501743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
71-333
               

               
Cow position:
               
chr21:23329016-23329294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
71-333
               

               
Cow position:
               
chr21:25173866-25173588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
71-333
               

               
Cow position:
               
chr21:26071156-26071434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
71-333
               

               
Cow position:
               
chr21:26854367-26854645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
71-333
               

               
Cow position:
               
chr21:36972818-36973096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 52
               

               
Conread position:
               
71-333
               

               
Cow position:
               
chr21:39561593-39561315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
71-333
               

               
Cow position:
               
chr21:41795398-41795676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
71-334
               

               
Cow position:
               
chr21:4665490-4665767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
71-334
               

               
Cow position:
               
chr21:35068358-35068079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
71-348
               

               
Cow position:
               
chr21:33632453-33632747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
71-398
               

               
Cow position:
               
chr21:16910054-16909691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
7, 85
               

               
Conread position:
               
71-411
               

               
Cow position:
               
chr21:36891908-36892279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
71-422
               

               
Cow position:
               
chr21:4904977-4905356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
35, 7
               

               
Conread position:
               
71-423
               

               
Cow position:
               
chr21:16795336-16794953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
11, 372
               

               
Conread position:
               
71-423
               

               
Cow position:
               
chr21:22099874-22100257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 372
               

               
Conread position:
               
71-423
               

               
Cow position:
               
chr21:29955216-29954833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 372
               

               
Conread position:
               
71-423
               

               
Cow position:
               
chr21:30135112-30134732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
71-423
               

               
Cow position:
               
chr21:30655965-30655582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
11, 372
               

               
Conread position:
               
71-423
               

               
Cow position:
               
chr21:33771003-33770620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
11, 372
               

               
Conread position:
               
71-423
               

               
Cow position:
               
chr21:38848474-38848857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 372
               

               
Conread position:
               
73-333
               

               
Cow position:
               
chr21:47429661-47429388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
43, 5
               

               
Conread position:
               
73-423
               

               
Cow position:
               
chr21:11293030-11292649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
43, 5
               

               
Conread position:
               
73-423
               

               
Cow position:
               
chr21:31039360-31039739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
43, 5
               

               
Conread position:
               
74-333
               

               
Cow position:
               
chr21:42463847-42464123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
41, 8
               

               
Conread position:
               
75-261
               

               
Cow position:
               
chr21:41579742-41579548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
76-238
               

               
Cow position:
               
chr21:17183908-17183741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 97
               

               
Conread position:
               
76-271
               

               
Cow position:
               
chr21:24797672-24797482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
100, 76
               

               
Conread position:
               
76-274
               

               
Cow position:
               
chr21:46829285-46829481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
86, 45
               

               
Conread position:
               
76-275
               

               
Cow position:
               
chr21:30592319-30592515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
76-309
               

               
Cow position:
               
chr21:39061838-39061591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
70, 47
               

               
Conread position:
               
76-331
               

               
Cow position:
               
chr21:28997915-28998187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
76-422
               

               
Cow position:
               
chr21:35897647-35898009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
176, 76
               

               
Conread position:
               
76-427
               

               
Cow position:
               
chr21:31159248-31158860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
42, 239
               

               
Conread position:
               
77-227
               

               
Cow position:
               
chr21:3763755-3763903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
30, 56
               

               
Conread position:
               
77-274
               

               
Cow position:
               
chr21:2927218-2927416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
32, 174
               

               
Conread position:
               
77-331
               

               
Cow position:
               
chr21:21968301-21968038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
77-334
               

               
Cow position:
               
chr21:697002-697268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
95, 68
               

               
Conread position:
               
77-421
               

               
Cow position:
               
chr21:34659018-34658651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 65
               

               
Conread position:
               
78-278
               

               
Cow position:
               
chr21:13303803-13303599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
36, 88
               

               
Conread position:
               
78-281
               

               
Cow position:
               
chr21:6051490-6051282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
69, 93
               

               
Conread position:
               
78-306
               

               
Cow position:
               
chr21:49700051-49700292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
34, 96
               

               
Conread position:
               
78-312
               

               
Cow position:
               
chr21:26241811-26241567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
36, 97
               

               
Conread position:
               
78-333
               

               
Cow position:
               
chr21:21624402-21624132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
78-333
               

               
Cow position:
               
chr21:39888765-39889026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
148, 79
               

               
Conread position:
               
78-334
               

               
Cow position:
               
chr21:28617572-28617319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
38, 96
               

               
Conread position:
               
78-391
               

               
Cow position:
               
chr21:23822150-23821813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
138, 94
               

               
Conread position:
               
78-421
               

               
Cow position:
               
chr21:363633-363266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
70, 34
               

               
Conread position:
               
78-421
               

               
Cow position:
               
chr21:4080342-4079967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
78-421
               

               
Cow position:
               
chr21:27341616-27341972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
37, 65
               

               
Conread position:
               
78-421
               

               
Cow position:
               
chr21:40244423-40244047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
78-423
               

               
Cow position:
               
chr21:2709572-2709947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
38, 364
               

               
Conread position:
               
79-413
               

               
Cow position:
               
chr21:28599759-28599392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
80-334
               

               
Cow position:
               
chr21:19668419-19668675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
80-423
               

               
Cow position:
               
chr21:37874503-37874130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
81-332
               

               
Cow position:
               
chr21:43631219-43631473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
91, 153
               

               
Conread position:
               
81-420
               

               
Cow position:
               
chr21:7716804-7717173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
83-333
               

               
Cow position:
               
chr21:28029379-28029115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
85-334
               

               
Cow position:
               
chr21:4279609-4279351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
87, 24
               

               
Conread position:
               
93-366
               

               
Cow position:
               
chr21:20377401-20377674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
23, 31
               

               
Conread position:
               
93-421
               

               
Cow position:
               
chr21:21169973-21170332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
23, 80
               

               
Conread position:
               
96-333
               

               
Cow position:
               
chr21:20162503-20162253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
76, 108
               

               
Conread position:
               
97-334
               

               
Cow position:
               
chr21:26399486-26399738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
19, 27
               

               
Conread position:
               
97-334
               

               
Cow position:
               
chr21:40266865-40267111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 61
               

               
Conread position:
               
97-421
               

               
Cow position:
               
chr21:5153581-5153230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
124, 75
               

               
Conread position:
               
99-398
               

               
Cow position:
               
chr21:35899772-35899441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
73, 42
               

               
Conread position:
               
99-410
               

               
Cow position:
               
chr21:33933417-33933760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
100-333
               

               
Cow position:
               
chr21:17282666-17282421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
11, 74
               

               
Conread position:
               
101-342
               

               
Cow position:
               
chr21:28993662-28993918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
101-348
               

               
Cow position:
               
chr21:23478759-23479012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
118, 216
               

               
Conread position:
               
104-333
               

               
Cow position:
               
chr21:31278735-31278500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
117, 41
               

               
Conread position:
               
108-334
               

               
Cow position:
               
chr21:21600702-21600943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
109-293
               

               
Cow position:
               
chr21:29014940-29015131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
63, 32
               

               
Conread position:
               
109-324
               

               
Cow position:
               
chr21:22140387-22140610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
112, 63
               

               
Conread position:
               
112-332
               

               
Cow position:
               
chr21:18713232-18713005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
114, 61
               

               
Conread position:
               
112-333
               

               
Cow position:
               
chr21:36657519-36657298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
114, 45
               

               
Conread position:
               
112-334
               

               
Cow position:
               
chr21:426742-426509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
112-334
               

               
Cow position:
               
chr21:10777017-10777238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
75, 138
               

               
Conread position:
               
113-271
               

               
Cow position:
               
chr21:11877331-11877171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
59, 114
               

               
Conread position:
               
114-410
               

               
Cow position:
               
chr21:34738546-34738223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
116-278
               

               
Cow position:
               
chr21:28919677-28919846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 89
               

               
Conread position:
               
117-340
               

               
Cow position:
               
chr21:29954493-29954715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
109, 38
               

               
Conread position:
               
119-421
               

               
Cow position:
               
chr21:31511994-31512328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 134
               

               
Conread position:
               
120-333
               

               
Cow position:
               
chr21:40265773-40265551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
99, 30
               

               
Conread position:
               
123-333
               

               
Cow position:
               
chr21:36399660-36399449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
49, 113
               

               
Conread position:
               
124-409
               

               
Cow position:
               
chr21:25158831-25158518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
48, 134
               

               
Conread position:
               
124-422
               

               
Cow position:
               
chr21:13301088-13300765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
102, 43
               

               
Conread position:
               
126-343
               

               
Cow position:
               
chr21:20588964-20588739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
100, 21
               

               
Conread position:
               
127-332
               

               
Cow position:
               
chr21:23672680-23672465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
45, 76
               

               
Conread position:
               
127-334
               

               
Cow position:
               
chr21:12339105-12338890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 47
               

               
Conread position:
               
138-421
               

               
Cow position:
               
chr21:19702451-19702137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
145-413
               

               
Cow position:
               
chr21:23293237-23293533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 63
               

               
Conread position:
               
171-331
               

               
Cow position:
               
chr21:29225171-29225339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
171-334
               

               
Cow position:
               
chr21:48637855-48638029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
175-334
               

               
Cow position:
               
chr21:27406324-27406487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
178-334
               

               
Cow position:
               
chr21:2657472-2657308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
178-342
               

               
Cow position:
               
chr21:45929-45754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
13, 18
               

               
Conread position:
               
213-422
               

               
Cow position:
               
chr21:14727896-14727668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
253-422
               

               
Cow position:
               
chr21:47465580-47465751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
8, 165
               
Show alignments to all cow chromosomes.