Cow genome map
| Conread name: | Pig2-74D03 |
| Conread position: | 247-504 |
| Cow position: | chr1:4027556-4027828 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 45, 61 |
| Conread position: | 254-481 |
| Cow position: | chr1:91817072-91816838 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 271-479 |
| Cow position: | chr1:58196383-58196168 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 86, 29 |
| Conread position: | 276-481 |
| Cow position: | chr1:47658079-47658281 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 277-494 |
| Cow position: | chr1:13455870-13456091 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 118, 31 |
| Conread position: | 278-481 |
| Cow position: | chr1:73584674-73584477 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 137, 28 |
| Conread position: | 280-481 |
| Cow position: | chr1:36874742-36874947 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 9, 82 |
| Conread position: | 280-481 |
| Cow position: | chr1:52488229-52488027 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 13, 27 |
| Conread position: | 288-472 |
| Cow position: | chr1:101551193-101551389 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 115, 105 |
| Conread position: | 288-475 |
| Cow position: | chr1:23969299-23969109 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 91, 18 |
| Conread position: | 288-477 |
| Cow position: | chr1:44769373-44769183 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 110, 21 |
| Conread position: | 288-481 |
| Cow position: | chr1:8349573-8349381 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 166, 18 |
| Conread position: | 292-443 |
| Cow position: | chr1:1348082-1347929 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 37, 14 |
| Conread position: | 292-444 |
| Cow position: | chr1:79002212-79002065 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 106, 14 |
| Conread position: | 292-444 |
| Cow position: | chr1:89834977-89835126 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 65, 14 |
| Conread position: | 292-452 |
| Cow position: | chr1:67577807-67577971 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 103, 153 |
| Conread position: | 292-452 |
| Cow position: | chr1:71676155-71675995 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 103, 14 |
| Conread position: | 292-458 |
| Cow position: | chr1:21954476-21954308 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 131, 16 |
| Conread position: | 292-473 |
| Cow position: | chr1:10778316-10778492 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 163, 14 |
| Conread position: | 292-473 |
| Cow position: | chr1:15547211-15547396 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 127, 14 |
| Conread position: | 292-473 |
| Cow position: | chr1:31845777-31845954 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 112, 13 |
| Conread position: | 292-474 |
| Cow position: | chr1:69264564-69264743 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 162, 14 |
| Conread position: | 292-475 |
| Cow position: | chr1:1801886-1802068 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 128, 14 |
| Conread position: | 292-475 |
| Cow position: | chr1:26896083-26895899 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 128, 16 |
| Conread position: | 292-475 |
| Cow position: | chr1:53622707-53622888 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 122, 13 |
| Conread position: | 292-481 |
| Cow position: | chr1:48580868-48581065 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 10, 104 |
| Conread position: | 292-481 |
| Cow position: | chr1:51628760-51628565 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 164 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 108, 13 |
| Conread position: | 292-481 |
| Cow position: | chr1:56225219-56225400 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 162, 14 |
| Conread position: | 292-494 |
| Cow position: | chr1:67014126-67014334 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 103, 14 |
| Conread position: | 292-502 |
| Cow position: | chr1:23634158-23633952 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 162, 14 |
| Conread position: | 292-502 |
| Cow position: | chr1:48444440-48444235 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 162, 14 |
| Conread position: | 294-481 |
| Cow position: | chr1:4290898-4291094 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 26, 8 |
| Conread position: | 294-482 |
| Cow position: | chr1:80988090-80988280 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 129, 13 |
| Conread position: | 295-452 |
| Cow position: | chr1:6240361-6240512 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 100, 11 |
| Conread position: | 295-473 |
| Cow position: | chr1:100400456-100400270 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 128, 10 |
| Conread position: | 295-481 |
| Cow position: | chr1:23905740-23905932 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 108, 11 |
| Conread position: | 295-481 |
| Cow position: | chr1:24528853-24528680 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 295-481 |
| Cow position: | chr1:24655705-24655897 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 100, 11 |
| Conread position: | 296-481 |
| Cow position: | chr1:21835694-21835879 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 115, 10 |
| Conread position: | 296-481 |
| Cow position: | chr1:64160087-64160274 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 120, 10 |
| Conread position: | 296-501 |
| Cow position: | chr1:54199634-54199424 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 127, 10 |
| Conread position: | 297-481 |
| Cow position: | chr1:14379783-14379601 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 109, 9 |
| Conread position: | 298-473 |
| Cow position: | chr1:102647521-102647346 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 113, 8 |
| Conread position: | 298-479 |
| Cow position: | chr1:61246403-61246232 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 298-481 |
| Cow position: | chr1:81180232-81180040 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 98, 14 |
| Conread position: | 298-482 |
| Cow position: | chr1:6165999-6166177 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 8 |
| Conread position: | 299-473 |
| Cow position: | chr1:74084440-74084269 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 301-478 |
| Cow position: | chr1:68854926-68855099 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 94, 11 |
| Conread position: | 308-453 |
| Cow position: | chr1:10632809-10632951 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 308-475 |
| Cow position: | chr1:70534178-70534005 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 104, 85 |
| Conread position: | 308-481 |
| Cow position: | chr1:30504227-30504405 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 87, 21 |
| Conread position: | 308-481 |
| Cow position: | chr1:31899775-31899598 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 10, 42 |
| Conread position: | 308-481 |
| Cow position: | chr1:51531529-51531701 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 146, 71 |
| Conread position: | 308-482 |
| Cow position: | chr1:57396173-57395995 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 21, 89 |
| Conread position: | 309-479 |
| Cow position: | chr1:81472636-81472805 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 144, 84 |
| Conread position: | 309-481 |
| Cow position: | chr1:53424944-53425109 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 145, 84 |
| Conread position: | 309-481 |
| Cow position: | chr1:93528447-93528632 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 95, 84 |
| Conread position: | 310-481 |
| Cow position: | chr1:85867356-85867531 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 94, 20 |
| Conread position: | 312-502 |
| Cow position: | chr1:3137693-3137888 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 87, 36 |
| Conread position: | 314-475 |
| Cow position: | chr1:64189264-64189425 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 45, 80 |
| Conread position: | 320-445 |
| Cow position: | chr1:21460635-21460761 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 96, 73 |
| Conread position: | 320-481 |
| Cow position: | chr1:64962887-64962733 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 134, 45 |
| Conread position: | 320-502 |
| Cow position: | chr1:32631234-32631420 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 156 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 103, 73 |
| Conread position: | 322-481 |
| Cow position: | chr1:68951401-68951561 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 73, 90 |
| Conread position: | 331-502 |
| Cow position: | chr1:71952866-71953035 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 123, 62 |
| Conread position: | 334-502 |
| Cow position: | chr1:81228558-81228383 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 69, 59 |
| Conread position: | 343-481 |
| Cow position: | chr1:62291895-62291757 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 110, 52 |
| Conread position: | 343-481 |
| Cow position: | chr1:75382782-75382928 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 52, 117 |
| Conread position: | 347-502 |
| Cow position: | chr1:101867150-101867304 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 64, 46 |
| Conread position: | 350-502 |
| Cow position: | chr1:28563771-28563614 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 73, 45 |
| Conread position: | 353-501 |
| Cow position: | chr1:94261348-94261496 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 101, 40 |
| Conread position: | 358-482 |
| Cow position: | chr1:10030345-10030473 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 63, 37 |
| Conread position: | 360-502 |
| Cow position: | chr1:83594000-83593844 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
Show alignments to all cow chromosomes.