Cow genome map
| Conread name: | Pig2-74D03 |
| Conread position: | 255-477 |
| Cow position: | chr11:31227670-31227894 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 26, 64 |
| Conread position: | 266-481 |
| Cow position: | chr11:27462697-27462480 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 269-481 |
| Cow position: | chr11:18572495-18572711 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 5, 39 |
| Conread position: | 277-502 |
| Cow position: | chr11:18484458-18484237 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 122, 29 |
| Conread position: | 277-502 |
| Cow position: | chr11:57111611-57111372 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 8, 55 |
| Conread position: | 280-473 |
| Cow position: | chr11:7334017-7333825 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 134, 26 |
| Conread position: | 280-481 |
| Cow position: | chr11:41986345-41986134 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 9, 33 |
| Conread position: | 280-482 |
| Cow position: | chr11:21894452-21894241 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 8, 29 |
| Conread position: | 284-481 |
| Cow position: | chr11:61202868-61203074 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 288-481 |
| Cow position: | chr11:20601950-20602139 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 166, 94 |
| Conread position: | 291-473 |
| Cow position: | chr11:48232458-48232635 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 163, 15 |
| Conread position: | 291-481 |
| Cow position: | chr11:17831512-17831311 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 104, 15 |
| Conread position: | 291-481 |
| Cow position: | chr11:40818929-40818728 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 291-502 |
| Cow position: | chr11:43913938-43914148 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 174 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 163, 14 |
| Conread position: | 292-435 |
| Cow position: | chr11:32254599-32254458 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 119, 14 |
| Conread position: | 292-454 |
| Cow position: | chr11:32067315-32067157 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 126, 13 |
| Conread position: | 292-473 |
| Cow position: | chr11:35363212-35363400 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 112, 14 |
| Conread position: | 292-473 |
| Cow position: | chr11:71868887-71868702 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 119, 14 |
| Conread position: | 292-475 |
| Cow position: | chr11:55117189-55117386 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 103, 14 |
| Conread position: | 292-478 |
| Cow position: | chr11:36986678-36986874 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 112, 14 |
| Conread position: | 292-481 |
| Cow position: | chr11:4323083-4323267 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 162, 20 |
| Conread position: | 292-481 |
| Cow position: | chr11:9837380-9837190 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 38, 8 |
| Conread position: | 292-481 |
| Cow position: | chr11:41812195-41812002 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 116, 14 |
| Conread position: | 292-481 |
| Cow position: | chr11:45282653-45282839 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 163, 14 |
| Conread position: | 292-481 |
| Cow position: | chr11:62490150-62490342 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 111, 19 |
| Conread position: | 292-481 |
| Cow position: | chr11:63847568-63847758 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 103, 14 |
| Conread position: | 292-481 |
| Cow position: | chr11:66733552-66733744 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 112, 14 |
| Conread position: | 292-481 |
| Cow position: | chr11:87155229-87155429 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 292-489 |
| Cow position: | chr11:65987947-65988144 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 122, 13 |
| Conread position: | 292-493 |
| Cow position: | chr11:37068587-37068388 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 162, 16 |
| Conread position: | 292-502 |
| Cow position: | chr11:3833631-3833422 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 108, 14 |
| Conread position: | 292-502 |
| Cow position: | chr11:42358845-42359047 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 120, 14 |
| Conread position: | 292-502 |
| Cow position: | chr11:48474425-48474638 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 103, 14 |
| Conread position: | 293-471 |
| Cow position: | chr11:22978139-22977965 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 102, 13 |
| Conread position: | 293-472 |
| Cow position: | chr11:37118202-37118390 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 293-475 |
| Cow position: | chr11:84774835-84775010 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 102, 13 |
| Conread position: | 293-490 |
| Cow position: | chr11:43897855-43898058 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 95, 13 |
| Conread position: | 293-502 |
| Cow position: | chr11:65495610-65495391 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 134, 15 |
| Conread position: | 294-472 |
| Cow position: | chr11:1849445-1849261 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 101, 12 |
| Conread position: | 294-481 |
| Cow position: | chr11:8988511-8988319 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 91, 12 |
| Conread position: | 294-481 |
| Cow position: | chr11:23138342-23138149 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 162 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 129, 12 |
| Conread position: | 294-481 |
| Cow position: | chr11:29947208-29947021 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 152, 12 |
| Conread position: | 294-481 |
| Cow position: | chr11:41577286-41577104 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 101, 12 |
| Conread position: | 295-502 |
| Cow position: | chr11:62155350-62155562 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 128, 11 |
| Conread position: | 297-481 |
| Cow position: | chr11:34032477-34032292 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 13, 37 |
| Conread position: | 297-481 |
| Cow position: | chr11:44234080-44234262 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 126, 9 |
| Conread position: | 298-502 |
| Cow position: | chr11:39057361-39057563 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 112, 8 |
| Conread position: | 305-478 |
| Cow position: | chr11:47125293-47125468 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 150, 91 |
| Conread position: | 308-446 |
| Cow position: | chr11:39034185-39034323 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 115, 76 |
| Conread position: | 308-473 |
| Cow position: | chr11:77207779-77207948 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 308-475 |
| Cow position: | chr11:377920-377740 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 16, 90 |
| Conread position: | 308-481 |
| Cow position: | chr11:1485630-1485445 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 308-481 |
| Cow position: | chr11:46746366-46746537 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 130, 13 |
| Conread position: | 308-481 |
| Cow position: | chr11:64638793-64638619 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 127, 84 |
| Conread position: | 308-482 |
| Cow position: | chr11:986670-986844 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 145, 87 |
| Conread position: | 308-502 |
| Cow position: | chr11:80530101-80530303 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 87, 104 |
| Conread position: | 309-481 |
| Cow position: | chr11:25336807-25336986 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 95, 32 |
| Conread position: | 313-473 |
| Cow position: | chr11:33754164-33754001 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 87, 101 |
| Conread position: | 317-502 |
| Cow position: | chr11:77128408-77128587 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 99, 71 |
| Conread position: | 319-481 |
| Cow position: | chr11:56728688-56728858 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 85, 74 |
| Conread position: | 322-502 |
| Cow position: | chr11:2309618-2309806 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 97, 141 |
| Conread position: | 323-502 |
| Cow position: | chr11:34467348-34467521 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 88, 72 |
| Conread position: | 324-477 |
| Cow position: | chr11:13043395-13043244 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 94, 64 |
| Conread position: | 324-481 |
| Cow position: | chr11:48544190-48544347 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 127, 16 |
| Conread position: | 325-453 |
| Cow position: | chr11:72870673-72870806 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 8 |
| Conread position: | 328-481 |
| Cow position: | chr11:47165387-47165230 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 68, 114 |
| Conread position: | 331-481 |
| Cow position: | chr11:30639195-30639032 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 334-502 |
| Cow position: | chr11:26117960-26117785 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 106, 64 |
| Conread position: | 345-481 |
| Cow position: | chr11:33348417-33348274 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 76, 50 |
Show alignments to all cow chromosomes.