Cow genome map
| Conread name: | Pig2-74D03 |
| Conread position: | 256-502 |
| Cow position: | chr5:30639126-30638884 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 22, 5 |
| Conread position: | 265-502 |
| Cow position: | chr5:20779646-20779418 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 6, 33 |
| Conread position: | 268-482 |
| Cow position: | chr5:26561890-26562110 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 66, 11 |
| Conread position: | 274-482 |
| Cow position: | chr5:2309823-2309602 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 53, 39 |
| Conread position: | 277-478 |
| Cow position: | chr5:30332685-30332889 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 11, 33 |
| Conread position: | 280-481 |
| Cow position: | chr5:16894026-16893820 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 128, 9 |
| Conread position: | 287-501 |
| Cow position: | chr5:49820896-49821119 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 106, 85 |
| Conread position: | 291-481 |
| Cow position: | chr5:4032229-4032039 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 125, 15 |
| Conread position: | 292-472 |
| Cow position: | chr5:28224216-28224398 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 131, 14 |
| Conread position: | 292-472 |
| Cow position: | chr5:29771279-29771461 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 104, 22 |
| Conread position: | 292-473 |
| Cow position: | chr5:29827814-29827994 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 103, 14 |
| Conread position: | 292-473 |
| Cow position: | chr5:32975790-32975606 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 155 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 103, 14 |
| Conread position: | 292-478 |
| Cow position: | chr5:31913102-31913290 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 56, 14 |
| Conread position: | 292-481 |
| Cow position: | chr5:24348872-24349061 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 119, 14 |
| Conread position: | 292-481 |
| Cow position: | chr5:26990154-26990345 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 88, 14 |
| Conread position: | 292-481 |
| Cow position: | chr5:32153555-32153363 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 159 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 112, 13 |
| Conread position: | 292-488 |
| Cow position: | chr5:64844356-64844160 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 103, 14 |
| Conread position: | 292-490 |
| Cow position: | chr5:41523032-41522831 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 131, 14 |
| Conread position: | 292-502 |
| Cow position: | chr5:42063964-42064181 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 124, 14 |
| Conread position: | 292-502 |
| Cow position: | chr5:42667627-42667412 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 103, 14 |
| Conread position: | 292-502 |
| Cow position: | chr5:42845839-42845619 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 147, 14 |
| Conread position: | 292-502 |
| Cow position: | chr5:43858667-43858457 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 127, 14 |
| Conread position: | 292-502 |
| Cow position: | chr5:53855465-53855676 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 148, 14 |
| Conread position: | 293-481 |
| Cow position: | chr5:5938086-5938278 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 130, 13 |
| Conread position: | 293-481 |
| Cow position: | chr5:33661616-33661810 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 111, 13 |
| Conread position: | 293-502 |
| Cow position: | chr5:41129527-41129730 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 107, 13 |
| Conread position: | 293-502 |
| Cow position: | chr5:63987685-63987471 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 66, 13 |
| Conread position: | 294-471 |
| Cow position: | chr5:28229920-28230097 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 132, 11 |
| Conread position: | 294-473 |
| Cow position: | chr5:3491964-3492140 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 154 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 160, 12 |
| Conread position: | 294-479 |
| Cow position: | chr5:58229466-58229656 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 294-481 |
| Cow position: | chr5:59298196-59298006 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 113, 12 |
| Conread position: | 294-481 |
| Cow position: | chr5:65933165-65932975 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 114, 12 |
| Conread position: | 294-481 |
| Cow position: | chr5:72903461-72903276 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 117, 12 |
| Conread position: | 297-448 |
| Cow position: | chr5:63967880-63967728 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 126, 9 |
| Conread position: | 298-481 |
| Cow position: | chr5:37814390-37814575 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 123, 8 |
| Conread position: | 305-481 |
| Cow position: | chr5:5257525-5257340 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 99, 139 |
| Conread position: | 308-472 |
| Cow position: | chr5:2851089-2851262 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 89, 21 |
| Conread position: | 308-477 |
| Cow position: | chr5:54311108-54311280 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 115, 47 |
| Conread position: | 308-481 |
| Cow position: | chr5:40357095-40356912 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 96, 62 |
| Conread position: | 308-481 |
| Cow position: | chr5:47888940-47888756 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 96, 85 |
| Conread position: | 308-481 |
| Cow position: | chr5:73079987-73080153 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 146, 53 |
| Conread position: | 308-502 |
| Cow position: | chr5:32963854-32963653 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 110, 24 |
| Conread position: | 309-481 |
| Cow position: | chr5:72564538-72564715 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 86, 20 |
| Conread position: | 310-475 |
| Cow position: | chr5:18090504-18090671 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 89, 99 |
| Conread position: | 312-482 |
| Cow position: | chr5:40152254-40152432 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 103, 79 |
| Conread position: | 312-501 |
| Cow position: | chr5:3771625-3771825 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 128, 81 |
| Conread position: | 320-481 |
| Cow position: | chr5:15462501-15462668 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 84, 31 |
| Conread position: | 320-481 |
| Cow position: | chr5:35969329-35969494 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 103, 73 |
| Conread position: | 322-496 |
| Cow position: | chr5:58320673-58320497 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 90, 74 |
| Conread position: | 323-481 |
| Cow position: | chr5:21964083-21964240 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 131, 17 |
| Conread position: | 323-502 |
| Cow position: | chr5:57736904-57737082 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 72, 89 |
| Conread position: | 324-481 |
| Cow position: | chr5:29212739-29212897 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 68, 97 |
| Conread position: | 324-502 |
| Cow position: | chr5:5201707-5201890 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 80, 34 |
| Conread position: | 325-458 |
| Cow position: | chr5:4280255-4280391 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 70, 86 |
| Conread position: | 326-481 |
| Cow position: | chr5:44049495-44049654 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 86 |
| Conread position: | 328-473 |
| Cow position: | chr5:8994771-8994622 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 95, 65 |
| Conread position: | 336-481 |
| Cow position: | chr5:24485623-24485484 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 119, 48 |
| Conread position: | 339-457 |
| Cow position: | chr5:56137238-56137116 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 84, 54 |
Show alignments to all cow chromosomes.