Cow genome map
| Conread name: | Pig2-74D03 |
| Conread position: | 254-475 |
| Cow position: | chrX:41743632-41743860 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 183 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 39, 23 |
| Conread position: | 254-502 |
| Cow position: | chrX:11844519-11844269 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 35, 23 |
| Conread position: | 261-501 |
| Cow position: | chrX:37489460-37489701 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 37, 45 |
| Conread position: | 277-444 |
| Cow position: | chrX:25283399-25283234 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 277-454 |
| Cow position: | chrX:6643006-6643183 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 277-464 |
| Cow position: | chrX:36154823-36154636 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 94, 11 |
| Conread position: | 277-475 |
| Cow position: | chrX:32128233-32128038 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 277-481 |
| Cow position: | chrX:27680150-27680349 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 143, 29 |
| Conread position: | 277-502 |
| Cow position: | chrX:27394267-27394043 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 206, 34 |
| Conread position: | 278-500 |
| Cow position: | chrX:47191651-47191434 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 181, 28 |
| Conread position: | 288-475 |
| Cow position: | chrX:488246-488440 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 105, 41 |
| Conread position: | 288-500 |
| Cow position: | chrX:20151606-20151827 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 107, 124 |
| Conread position: | 292-473 |
| Cow position: | chrX:1810399-1810212 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 101, 14 |
| Conread position: | 292-475 |
| Cow position: | chrX:31489274-31489468 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 103, 14 |
| Conread position: | 292-481 |
| Cow position: | chrX:4123597-4123792 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 119, 14 |
| Conread position: | 292-481 |
| Cow position: | chrX:23497901-23497714 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 162 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 124, 14 |
| Conread position: | 292-481 |
| Cow position: | chrX:39546211-39546020 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 112, 14 |
| Conread position: | 292-481 |
| Cow position: | chrX:40035687-40035489 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 157 |
| Conread position: | 292-481 |
| Cow position: | chrX:42470175-42469988 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 119, 14 |
| Conread position: | 292-481 |
| Cow position: | chrX:47344056-47344248 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 110, 14 |
| Conread position: | 292-482 |
| Cow position: | chrX:917607-917410 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 122, 14 |
| Conread position: | 292-482 |
| Cow position: | chrX:18695159-18694969 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 156 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 38, 14 |
| Conread position: | 292-482 |
| Cow position: | chrX:38094763-38094566 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 103, 14 |
| Conread position: | 292-493 |
| Cow position: | chrX:126554-126754 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 103, 14 |
| Conread position: | 292-500 |
| Cow position: | chrX:34554492-34554703 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 14 |
| Conread position: | 292-502 |
| Cow position: | chrX:8925465-8925680 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 32, 14 |
| Conread position: | 292-502 |
| Cow position: | chrX:28845608-28845810 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 163, 14 |
| Conread position: | 292-502 |
| Cow position: | chrX:28866230-28866025 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 129, 14 |
| Conread position: | 292-502 |
| Cow position: | chrX:31294780-31294584 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 191, 14 |
| Conread position: | 292-502 |
| Cow position: | chrX:33466379-33466589 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 131, 14 |
| Conread position: | 292-502 |
| Cow position: | chrX:39556055-39555858 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 162, 14 |
| Conread position: | 292-502 |
| Cow position: | chrX:42492748-42492538 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 131, 14 |
| Conread position: | 293-482 |
| Cow position: | chrX:6690485-6690301 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 130, 13 |
| Conread position: | 293-500 |
| Cow position: | chrX:41122835-41123039 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 130, 13 |
| Conread position: | 294-473 |
| Cow position: | chrX:35409432-35409604 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 129, 12 |
| Conread position: | 294-481 |
| Cow position: | chrX:5638405-5638214 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 80, 12 |
| Conread position: | 294-481 |
| Cow position: | chrX:30543518-30543334 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 101, 12 |
| Conread position: | 294-481 |
| Cow position: | chrX:45693868-45694056 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 95, 148 |
| Conread position: | 294-482 |
| Cow position: | chrX:35273108-35273310 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 105 |
| Conread position: | 295-475 |
| Cow position: | chrX:31260865-31260679 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 100, 11 |
| Conread position: | 296-481 |
| Cow position: | chrX:33020252-33020438 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 124, 10 |
| Conread position: | 297-498 |
| Cow position: | chrX:42339169-42338971 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 119, 9 |
| Conread position: | 298-480 |
| Cow position: | chrX:34543555-34543741 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 125, 8 |
| Conread position: | 298-481 |
| Cow position: | chrX:2206776-2206596 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 157, 8 |
| Conread position: | 299-478 |
| Cow position: | chrX:18456161-18456346 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 96, 7 |
| Conread position: | 308-444 |
| Cow position: | chrX:47379691-47379562 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 308-473 |
| Cow position: | chrX:16324187-16324018 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 111, 8 |
| Conread position: | 308-475 |
| Cow position: | chrX:48684447-48684277 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 103, 85 |
| Conread position: | 308-481 |
| Cow position: | chrX:619232-619050 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 87, 139 |
| Conread position: | 308-481 |
| Cow position: | chrX:12249581-12249756 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 21, 70 |
| Conread position: | 308-481 |
| Cow position: | chrX:16416284-16416462 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 87, 32 |
| Conread position: | 308-481 |
| Cow position: | chrX:37048805-37048623 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 86 |
| Conread position: | 308-481 |
| Cow position: | chrX:37910229-37910400 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 136, 7 |
| Conread position: | 308-481 |
| Cow position: | chrX:42247408-42247232 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 146 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 87, 135 |
| Conread position: | 308-481 |
| Cow position: | chrX:45412879-45412705 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 154, 85 |
| Conread position: | 308-501 |
| Cow position: | chrX:4044074-4043882 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 90, 24 |
| Conread position: | 308-502 |
| Cow position: | chrX:23970165-23970355 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 87, 21 |
| Conread position: | 308-502 |
| Cow position: | chrX:35681121-35681320 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 25, 71 |
| Conread position: | 312-453 |
| Cow position: | chrX:37574636-37574774 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 314-481 |
| Cow position: | chrX:16996284-16996456 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 26, 85 |
| Conread position: | 319-493 |
| Cow position: | chrX:41238576-41238408 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 76, 11 |
| Conread position: | 322-476 |
| Cow position: | chrX:29876277-29876122 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 82, 71 |
| Conread position: | 323-481 |
| Cow position: | chrX:6234658-6234498 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 88, 70 |
| Conread position: | 331-472 |
| Cow position: | chrX:17908485-17908341 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 62, 110 |
| Conread position: | 331-502 |
| Cow position: | chrX:1499468-1499644 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 69, 81 |
| Conread position: | 341-502 |
| Cow position: | chrX:43730406-43730243 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 54, 77 |
| Conread position: | 342-481 |
| Cow position: | chrX:31311835-31311983 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 105 |
| Conread position: | 361-475 |
| Cow position: | chrX:32820857-32820978 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 32 |
Show alignments to all cow chromosomes.