Cow genome map
| Conread name: | Pig2-91C13 |
| Conread position: | 1-115 |
| Cow position: | chr11:45632813-45632932 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-134 |
| Cow position: | chr11:21820256-21820397 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-136 |
| Cow position: | chr11:76370695-76370838 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-167 |
| Cow position: | chr11:7307194-7307020 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 1-185 |
| Cow position: | chr11:66858843-66859040 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-203 |
| Cow position: | chr11:47757843-47758060 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-204 |
| Cow position: | chr11:21371936-21372154 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-233 |
| Cow position: | chr11:3230465-3230218 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-240 |
| Cow position: | chr11:2293915-2294173 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-246 |
| Cow position: | chr11:4206317-4206061 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 98 |
| Conread position: | 1-247 |
| Cow position: | chr11:67347972-67348233 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-248 |
| Cow position: | chr11:8829640-8829890 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 68, 103 |
| Conread position: | 1-248 |
| Cow position: | chr11:15988433-15988167 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-248 |
| Cow position: | chr11:21853106-21853372 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-248 |
| Cow position: | chr11:26482715-26482451 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-248 |
| Cow position: | chr11:30164716-30164451 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 9, 78 |
| Conread position: | 1-248 |
| Cow position: | chr11:67599716-67599458 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 45, 130 |
| Conread position: | 1-248 |
| Cow position: | chr11:84774310-84774044 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-287 |
| Cow position: | chr11:26067965-26068289 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 41, 301 |
| Conread position: | 1-288 |
| Cow position: | chr11:27938738-27938439 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 111, 45 |
| Conread position: | 1-291 |
| Cow position: | chr11:62009656-62009976 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 293 |
| Conread position: | 1-292 |
| Cow position: | chr11:67848827-67849155 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 303 |
| Conread position: | 1-293 |
| Cow position: | chr11:49935603-49935916 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-294 |
| Cow position: | chr11:417327-417650 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 293 |
| Conread position: | 1-294 |
| Cow position: | chr11:3496188-3495866 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 292 |
| Conread position: | 1-294 |
| Cow position: | chr11:4675488-4675792 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 61, 112 |
| Conread position: | 1-294 |
| Cow position: | chr11:15995639-15995309 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 65, 298 |
| Conread position: | 1-294 |
| Cow position: | chr11:16229507-16229824 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 287 |
| Conread position: | 1-294 |
| Cow position: | chr11:20731077-20731399 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 292 |
| Conread position: | 1-294 |
| Cow position: | chr11:21620286-21619964 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-294 |
| Cow position: | chr11:33687904-33688197 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 60, 235 |
| Conread position: | 1-294 |
| Cow position: | chr11:35541925-35542245 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 55 |
| Conread position: | 1-294 |
| Cow position: | chr11:35738199-35738519 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 165 |
| Conread position: | 1-294 |
| Cow position: | chr11:38599569-38599891 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 292 |
| Conread position: | 1-294 |
| Cow position: | chr11:39151744-39151421 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 237 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-294 |
| Cow position: | chr11:41106249-41106565 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1-294 |
| Cow position: | chr11:44580089-44580410 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 174 |
| Conread position: | 1-294 |
| Cow position: | chr11:63390337-63390656 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 237 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 62, 178 |
| Conread position: | 1-294 |
| Cow position: | chr11:74928941-74928626 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 98 |
| Conread position: | 1-294 |
| Cow position: | chr11:81067884-81067572 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 238 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 42, 195 |
| Conread position: | 1-294 |
| Cow position: | chr11:84967253-84966937 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 286 |
| Conread position: | 1-294 |
| Cow position: | chr11:86579070-86578748 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 57, 293 |
| Conread position: | 1-455 |
| Cow position: | chr11:40772925-40773413 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 164 |
| Conread position: | 1-458 |
| Cow position: | chr11:23494890-23494393 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 56 |
| Conread position: | 1-459 |
| Cow position: | chr11:46412780-46412271 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 343 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 59, 178 |
| Conread position: | 1-467 |
| Cow position: | chr11:31929585-31929078 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 20 |
| Conread position: | 1-482 |
| Cow position: | chr11:28381812-28381305 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 329 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 53, 307 |
| Conread position: | 1-487 |
| Cow position: | chr11:15836056-15835520 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 417 |
| Conread position: | 2-218 |
| Cow position: | chr11:70602139-70602365 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 59, 187 |
| Conread position: | 2-291 |
| Cow position: | chr11:1504852-1505171 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 233 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 61, 296 |
| Conread position: | 2-294 |
| Cow position: | chr11:25336283-25335963 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 295 |
| Conread position: | 3-123 |
| Cow position: | chr11:10303002-10303124 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 3-211 |
| Cow position: | chr11:77237007-77236782 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 3-248 |
| Cow position: | chr11:25564895-25564632 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 60, 182 |
| Conread position: | 3-248 |
| Cow position: | chr11:77746063-77746327 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 58, 240 |
| Conread position: | 3-248 |
| Cow position: | chr11:80789247-80789512 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 202 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 3-292 |
| Cow position: | chr11:10094012-10093701 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 229 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 59, 90 |
| Conread position: | 3-294 |
| Cow position: | chr11:36930391-36930696 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 202 |
| Conread position: | 12-204 |
| Cow position: | chr11:32977867-32978075 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 13-204 |
| Cow position: | chr11:32956682-32956889 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 16-302 |
| Cow position: | chr11:26400611-26400300 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 45, 60 |
| Conread position: | 60-457 |
| Cow position: | chr11:27660310-27659874 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 97 |
| Conread position: | 285-456 |
| Cow position: | chr11:57754407-57754579 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 295-455 |
| Cow position: | chr11:33041954-33042122 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 296-457 |
| Cow position: | chr11:14734603-14734755 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 296-459 |
| Cow position: | chr11:63860843-63861013 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 296-487 |
| Cow position: | chr11:417673-417857 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 78, 105 |
| Conread position: | 296-487 |
| Cow position: | chr11:57625389-57625577 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 70, 158 |
| Conread position: | 297-487 |
| Cow position: | chr11:10093672-10093482 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 49, 71 |
Show alignments to all cow chromosomes.