Cow genome map
| Conread name: | Pig2-91C13 |
| Conread position: | 1-134 |
| Cow position: | chr21:17207786-17207651 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 129 |
| Conread position: | 1-140 |
| Cow position: | chr21:18979561-18979701 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-183 |
| Cow position: | chr21:28810979-28811170 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-194 |
| Cow position: | chr21:24297466-24297661 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 60, 42 |
| Conread position: | 1-204 |
| Cow position: | chr21:9010499-9010718 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-204 |
| Cow position: | chr21:15585117-15585317 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 197, 59 |
| Conread position: | 1-204 |
| Cow position: | chr21:28616863-28616656 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 59, 129 |
| Conread position: | 1-247 |
| Cow position: | chr21:22855506-22855256 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 108 |
| Conread position: | 1-248 |
| Cow position: | chr21:1765921-1766177 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 53, 114 |
| Conread position: | 1-248 |
| Cow position: | chr21:4189150-4188879 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 52, 264 |
| Conread position: | 1-248 |
| Cow position: | chr21:11509549-11509283 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1-249 |
| Cow position: | chr21:27522221-27522479 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 60, 147 |
| Conread position: | 1-249 |
| Cow position: | chr21:46974126-46974389 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 15 |
| Conread position: | 1-250 |
| Cow position: | chr21:28881276-28881013 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 60, 203 |
| Conread position: | 1-291 |
| Cow position: | chr21:28598198-28597881 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 63, 177 |
| Conread position: | 1-292 |
| Cow position: | chr21:31275950-31275635 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1-293 |
| Cow position: | chr21:21216867-21217162 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 62, 163 |
| Conread position: | 1-293 |
| Cow position: | chr21:39400843-39400528 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 68, 289 |
| Conread position: | 1-294 |
| Cow position: | chr21:2768235-2768557 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 54, 98 |
| Conread position: | 1-294 |
| Cow position: | chr21:4722245-4721943 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 53, 93 |
| Conread position: | 1-294 |
| Cow position: | chr21:6623421-6623110 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 263 |
| Conread position: | 1-294 |
| Cow position: | chr21:9863338-9863637 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 57, 130 |
| Conread position: | 1-294 |
| Cow position: | chr21:9895965-9895648 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 136 |
| Conread position: | 1-294 |
| Cow position: | chr21:12153426-12153110 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 116, 41 |
| Conread position: | 1-294 |
| Cow position: | chr21:13163018-13162722 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 1-294 |
| Cow position: | chr21:15546085-15546396 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 85 |
| Conread position: | 1-294 |
| Cow position: | chr21:16890232-16890556 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 238 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 61, 192 |
| Conread position: | 1-294 |
| Cow position: | chr21:19627102-19627421 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 9 |
| Conread position: | 1-294 |
| Cow position: | chr21:22719493-22719811 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 288 |
| Conread position: | 1-294 |
| Cow position: | chr21:25987022-25986704 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 42 |
| Conread position: | 1-294 |
| Cow position: | chr21:26875199-26874878 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 291 |
| Conread position: | 1-294 |
| Cow position: | chr21:36376589-36376276 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 68 |
| Conread position: | 1-294 |
| Cow position: | chr21:36506231-36506552 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 54, 103 |
| Conread position: | 1-294 |
| Cow position: | chr21:36534600-36534922 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 296 |
| Conread position: | 1-294 |
| Cow position: | chr21:48262423-48262102 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 68, 9 |
| Conread position: | 1-361 |
| Cow position: | chr21:32534428-32534037 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 12 |
| Conread position: | 1-366 |
| Cow position: | chr21:81346-80984 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 267 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 115, 96 |
| Conread position: | 1-468 |
| Cow position: | chr21:12802502-12803011 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 342 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 21, 158 |
| Conread position: | 1-487 |
| Cow position: | chr21:31252595-31252061 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 364 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 61, 97 |
| Conread position: | 3-179 |
| Cow position: | chr21:23293879-23294064 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 3-247 |
| Cow position: | chr21:2293576-2293839 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 3-247 |
| Cow position: | chr21:18824086-18824327 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 191, 51 |
| Conread position: | 3-248 |
| Cow position: | chr21:34254985-34255236 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 98, 56 |
| Conread position: | 3-289 |
| Cow position: | chr21:25156890-25156591 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 224 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 58, 127 |
| Conread position: | 3-294 |
| Cow position: | chr21:43308-43003 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 55, 151 |
| Conread position: | 3-294 |
| Cow position: | chr21:27125112-27125431 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 58, 292 |
| Conread position: | 3-429 |
| Cow position: | chr21:33728713-33728228 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 189 |
| Conread position: | 4-121 |
| Cow position: | chr21:20588311-20588190 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 59, 82 |
| Conread position: | 4-202 |
| Cow position: | chr21:1284342-1284554 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 60, 151 |
| Conread position: | 4-240 |
| Cow position: | chr21:24887249-24887000 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 57, 198 |
| Conread position: | 4-248 |
| Cow position: | chr21:18285410-18285148 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 57, 11 |
| Conread position: | 4-249 |
| Cow position: | chr21:32573586-32573320 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 62, 170 |
| Conread position: | 10-288 |
| Cow position: | chr21:3253233-3252917 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 59, 290 |
| Conread position: | 16-291 |
| Cow position: | chr21:2514444-2514140 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 277 |
| Conread position: | 285-487 |
| Cow position: | chr21:4898689-4898899 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 171 |
| Conread position: | 296-459 |
| Cow position: | chr21:14726954-14726781 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 296-487 |
| Cow position: | chr21:34657209-34657021 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 42, 70 |
| Conread position: | 307-487 |
| Cow position: | chr21:27125479-27125655 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 31, 60 |
| Conread position: | 365-456 |
| Cow position: | chr21:10042544-10042453 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 78 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.