Cow genome map
| Conread name: | Pig2-91C13 |
| Conread position: | 1-121 |
| Cow position: | chr5:5787065-5787190 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-121 |
| Cow position: | chr5:39936364-39936240 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-134 |
| Cow position: | chr5:39448282-39448417 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 53, 119 |
| Conread position: | 1-141 |
| Cow position: | chr5:6839924-6840063 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 65, 20 |
| Conread position: | 1-149 |
| Cow position: | chr5:14558193-14558354 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-167 |
| Cow position: | chr5:7042506-7042328 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1-192 |
| Cow position: | chr5:6044263-6044063 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-200 |
| Cow position: | chr5:55088119-55087906 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1-203 |
| Cow position: | chr5:45941733-45941939 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 61, 96 |
| Conread position: | 1-204 |
| Cow position: | chr5:34527831-34527624 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 53, 177 |
| Conread position: | 1-245 |
| Cow position: | chr5:4165892-4165633 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-247 |
| Cow position: | chr5:4753868-4754133 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-247 |
| Cow position: | chr5:15855967-15856228 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 17 |
| Conread position: | 1-247 |
| Cow position: | chr5:28223704-28223440 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 63, 103 |
| Conread position: | 1-248 |
| Cow position: | chr5:5937571-5937306 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 61, 254 |
| Conread position: | 1-248 |
| Cow position: | chr5:10262011-10262276 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-248 |
| Cow position: | chr5:27195797-27196061 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 62, 192 |
| Conread position: | 1-248 |
| Cow position: | chr5:43991547-43991281 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1-248 |
| Cow position: | chr5:53834917-53834653 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 242 |
| Conread position: | 1-248 |
| Cow position: | chr5:76098765-76099031 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-250 |
| Cow position: | chr5:41523730-41524002 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-255 |
| Cow position: | chr5:35207507-35207234 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-285 |
| Cow position: | chr5:39363137-39362834 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-288 |
| Cow position: | chr5:68593685-68593382 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 126 |
| Conread position: | 1-290 |
| Cow position: | chr5:6124897-6125215 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 292 |
| Conread position: | 1-292 |
| Cow position: | chr5:28016321-28015994 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-293 |
| Cow position: | chr5:29459157-29458866 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 150, 45 |
| Conread position: | 1-293 |
| Cow position: | chr5:34669824-34670144 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-293 |
| Cow position: | chr5:54721917-54721599 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 60, 77 |
| Conread position: | 1-294 |
| Cow position: | chr5:443044-443366 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 292 |
| Conread position: | 1-294 |
| Cow position: | chr5:6032239-6031927 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 61, 112 |
| Conread position: | 1-294 |
| Cow position: | chr5:24577701-24577379 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 62, 292 |
| Conread position: | 1-294 |
| Cow position: | chr5:24643609-24643917 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 268 |
| Conread position: | 1-294 |
| Cow position: | chr5:34192185-34191867 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 68, 105 |
| Conread position: | 1-294 |
| Cow position: | chr5:51746483-51746167 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 286 |
| Conread position: | 1-294 |
| Cow position: | chr5:64061592-64061271 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 291 |
| Conread position: | 1-294 |
| Cow position: | chr5:64845003-64845321 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 288 |
| Conread position: | 1-294 |
| Cow position: | chr5:73444665-73444344 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 68, 247 |
| Conread position: | 1-345 |
| Cow position: | chr5:31921323-31920955 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 68, 6 |
| Conread position: | 1-459 |
| Cow position: | chr5:49565829-49565320 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 355 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 111, 87 |
| Conread position: | 1-466 |
| Cow position: | chr5:42676508-42676020 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 246 |
| Conread position: | 1-487 |
| Cow position: | chr5:445744-445237 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 268 |
| Conread position: | 1-487 |
| Cow position: | chr5:30294568-30294038 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 369 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 46, 72 |
| Conread position: | 2-294 |
| Cow position: | chr5:14904815-14905108 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 60, 117 |
| Conread position: | 2-294 |
| Cow position: | chr5:47871844-47872163 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 3-121 |
| Cow position: | chr5:52041226-52041344 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-248 |
| Cow position: | chr5:8996748-8997007 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 3-288 |
| Cow position: | chr5:45705274-45704968 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 234 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 59, 162 |
| Conread position: | 3-291 |
| Cow position: | chr5:19969779-19970086 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 58, 128 |
| Conread position: | 3-458 |
| Cow position: | chr5:46626014-46626528 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 288 |
| Conread position: | 3-459 |
| Cow position: | chr5:46671866-46671357 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 229 |
| Conread position: | 3-486 |
| Cow position: | chr5:27178898-27178368 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 373 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 63, 151 |
| Conread position: | 3-487 |
| Cow position: | chr5:12133856-12133321 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 491 |
| Conread position: | 3-487 |
| Cow position: | chr5:41980653-41980193 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 97 |
| Conread position: | 4-204 |
| Cow position: | chr5:1105616-1105825 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 4-294 |
| Cow position: | chr5:46650359-46650047 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 231 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 59, 266 |
| Conread position: | 5-190 |
| Cow position: | chr5:35180390-35180192 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 42, 37 |
| Conread position: | 5-248 |
| Cow position: | chr5:26135007-26135268 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 198 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 9-234 |
| Cow position: | chr5:29558849-29558610 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 60, 159 |
| Conread position: | 16-467 |
| Cow position: | chr5:46685377-46685878 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 337 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 106, 77 |
| Conread position: | 21-204 |
| Cow position: | chr5:59782517-59782715 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 295-487 |
| Cow position: | chr5:23353662-23353467 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 82 |
| Conread position: | 296-487 |
| Cow position: | chr5:23829255-23829450 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 59, 165 |
| Conread position: | 297-487 |
| Cow position: | chr5:28222321-28222505 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 86, 59 |
| Conread position: | 300-487 |
| Cow position: | chr5:41229131-41229323 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 66, 113 |
| Conread position: | 350-487 |
| Cow position: | chr5:58243945-58244076 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 15 |
| Conread position: | 365-487 |
| Cow position: | chr5:7396086-7395969 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
Show alignments to all cow chromosomes.