Cow genome map
| Conread name: | Pig2-91C13 |
| Conread position: | 1-117 |
| Cow position: | chr6:2606868-2606748 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1-121 |
| Cow position: | chr6:27858862-27858746 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-124 |
| Cow position: | chr6:39093021-39092893 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-137 |
| Cow position: | chr6:58036685-58036541 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1-164 |
| Cow position: | chr6:25408290-25408461 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-182 |
| Cow position: | chr6:50526913-50526721 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 1-204 |
| Cow position: | chr6:1109412-1109193 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-204 |
| Cow position: | chr6:5096404-5096619 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-204 |
| Cow position: | chr6:20267912-20268126 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 62, 182 |
| Conread position: | 1-222 |
| Cow position: | chr6:7448899-7448659 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-232 |
| Cow position: | chr6:17344603-17344354 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 193 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-242 |
| Cow position: | chr6:51674170-51673918 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 60, 103 |
| Conread position: | 1-247 |
| Cow position: | chr6:12388058-12388315 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 68, 158 |
| Conread position: | 1-248 |
| Cow position: | chr6:6613700-6613454 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 65, 130 |
| Conread position: | 1-248 |
| Cow position: | chr6:9737854-9738116 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-248 |
| Cow position: | chr6:10681388-10681134 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 65, 158 |
| Conread position: | 1-248 |
| Cow position: | chr6:19044610-19044352 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 60, 191 |
| Conread position: | 1-248 |
| Cow position: | chr6:21588388-21588122 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-248 |
| Cow position: | chr6:45666526-45666789 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 62, 165 |
| Conread position: | 1-248 |
| Cow position: | chr6:46283696-46283958 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 12 |
| Conread position: | 1-248 |
| Cow position: | chr6:58595005-58595268 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1-251 |
| Cow position: | chr6:44510490-44510226 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 51, 170 |
| Conread position: | 1-284 |
| Cow position: | chr6:6471532-6471830 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 62, 103 |
| Conread position: | 1-286 |
| Cow position: | chr6:16410458-16410148 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 13 |
| Conread position: | 1-290 |
| Cow position: | chr6:50637672-50637370 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 61, 124 |
| Conread position: | 1-291 |
| Cow position: | chr6:2875630-2875946 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 62, 289 |
| Conread position: | 1-291 |
| Cow position: | chr6:12352240-12351917 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 109, 87 |
| Conread position: | 1-292 |
| Cow position: | chr6:16418278-16418598 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 292 |
| Conread position: | 1-292 |
| Cow position: | chr6:24631847-24632165 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 115, 188 |
| Conread position: | 1-292 |
| Cow position: | chr6:47171466-47171166 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 60, 208 |
| Conread position: | 1-292 |
| Cow position: | chr6:58031181-58030863 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-293 |
| Cow position: | chr6:52557247-52557548 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 68, 170 |
| Conread position: | 1-294 |
| Cow position: | chr6:1537109-1536787 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 296 |
| Conread position: | 1-294 |
| Cow position: | chr6:4903597-4903904 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 105 |
| Conread position: | 1-294 |
| Cow position: | chr6:6119589-6119905 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 28, 280 |
| Conread position: | 1-294 |
| Cow position: | chr6:11638802-11639117 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 228 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 63, 288 |
| Conread position: | 1-294 |
| Cow position: | chr6:11721804-11722120 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 290 |
| Conread position: | 1-294 |
| Cow position: | chr6:12926977-12926655 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 239 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 63, 295 |
| Conread position: | 1-294 |
| Cow position: | chr6:14851346-14851664 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 236 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 65, 12 |
| Conread position: | 1-294 |
| Cow position: | chr6:14950251-14950570 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 59 |
| Conread position: | 1-294 |
| Cow position: | chr6:16049889-16050210 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 291 |
| Conread position: | 1-294 |
| Cow position: | chr6:19718972-19718667 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 115, 42 |
| Conread position: | 1-294 |
| Cow position: | chr6:39136902-39136584 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 48 |
| Conread position: | 1-294 |
| Cow position: | chr6:43621135-43620813 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 292 |
| Conread position: | 1-294 |
| Cow position: | chr6:52977764-52978076 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 65, 129 |
| Conread position: | 1-294 |
| Cow position: | chr6:64426191-64425874 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 59, 119 |
| Conread position: | 1-295 |
| Cow position: | chr6:17556269-17556591 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 61, 164 |
| Conread position: | 1-295 |
| Cow position: | chr6:34075276-34074949 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 59, 213 |
| Conread position: | 1-296 |
| Cow position: | chr6:16645288-16644976 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 231 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 62, 98 |
| Conread position: | 1-487 |
| Cow position: | chr6:25374704-25375236 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 296 |
| Conread position: | 1-487 |
| Cow position: | chr6:59596649-59596120 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 296 |
| Conread position: | 2-244 |
| Cow position: | chr6:51877156-51876907 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 190 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 72, 156 |
| Conread position: | 2-294 |
| Cow position: | chr6:50120527-50120843 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 289 |
| Conread position: | 3-248 |
| Cow position: | chr6:6459510-6459252 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 3-248 |
| Cow position: | chr6:18987532-18987278 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 52, 195 |
| Conread position: | 3-248 |
| Cow position: | chr6:40031438-40031191 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 101 |
| Conread position: | 3-294 |
| Cow position: | chr6:7105132-7105446 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 50, 188 |
| Conread position: | 3-294 |
| Cow position: | chr6:13307996-13308314 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 59, 184 |
| Conread position: | 3-294 |
| Cow position: | chr6:50114079-50113768 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 304 |
| Conread position: | 4-290 |
| Cow position: | chr6:59619478-59619160 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 238 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 10, 294 |
| Conread position: | 6-295 |
| Cow position: | chr6:529494-529809 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 60, 97 |
| Conread position: | 8-248 |
| Cow position: | chr6:49761861-49761608 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 53, 154 |
| Conread position: | 8-457 |
| Cow position: | chr6:53935241-53935749 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 236 |
| Conread position: | 12-247 |
| Cow position: | chr6:4468016-4467776 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 49, 139 |
| Conread position: | 13-211 |
| Cow position: | chr6:27816196-27816395 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 87 |
| Conread position: | 16-121 |
| Cow position: | chr6:61632522-61632412 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 16-487 |
| Cow position: | chr6:1402170-1402670 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 251 |
| Conread position: | 16-487 |
| Cow position: | chr6:1406758-1407258 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 251 |
| Conread position: | 25-299 |
| Cow position: | chr6:4274449-4274147 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 285-452 |
| Cow position: | chr6:529819-529998 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 285-487 |
| Cow position: | chr6:16703672-16703871 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 7, 169 |
| Conread position: | 296-441 |
| Cow position: | chr6:706057-705905 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 296-459 |
| Cow position: | chr6:13308337-13308504 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 55, 71 |
| Conread position: | 296-487 |
| Cow position: | chr6:2367202-2367383 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 87, 43 |
| Conread position: | 296-487 |
| Cow position: | chr6:6119928-6120121 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 72, 164 |
| Conread position: | 296-487 |
| Cow position: | chr6:28488519-28488710 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 62, 161 |
| Conread position: | 296-487 |
| Cow position: | chr6:36531332-36531139 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 53, 73 |
| Conread position: | 296-487 |
| Cow position: | chr6:41389397-41389588 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 53, 72 |
| Conread position: | 296-487 |
| Cow position: | chr6:45480029-45480218 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 60, 70 |
| Conread position: | 302-487 |
| Cow position: | chr6:12970869-12971059 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 55, 160 |
| Conread position: | 365-485 |
| Cow position: | chr6:28171880-28171764 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 90 |
Show alignments to all cow chromosomes.